Busch Lab

ZMP

col15a1b

Ensembl ID:
ENSDARG00000061848
ZFIN ID:
ZDB-GENE-070912-689
Description:
collagen alpha-1(XV) chain [Source:RefSeq peptide;Acc:NP_001165841]
Human Orthologue:
COL15A1
Human Description:
collagen, type XV, alpha 1 [Source:HGNC Symbol;Acc:2192]
Mouse Orthologue:
Col15a1
Mouse Description:
collagen, type XV, alpha 1 Gene [Source:MGI Symbol;Acc:MGI:88449]

Alleles

There are 7 alleles of this gene:

Allele Name Consequence Status Availability
sa39823 Nonsense Mutation detected in F1 DNA Not yet available
sa30818 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa39824 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa39825 Nonsense Mutation detected in F1 DNA Not yet available
sa11640 Essential Splice Site Available for shipment Available now
sa12573 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa39823
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000088643 None None 1149 None 36
ENSDART00000111483 Nonsense 10 236 1 2
ENSDART00000125548 None None 235 None 4
ENSDART00000137065 None None 899 None 35

The following transcripts of ENSDARG00000061848 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 2 (position 23877883)
Other Location(s):
Assembly Chromosome Position
GRCz10 2 24330612
GRCz11 2 23986263
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CTACCTCGTCGGGCTGAGCAGGATGGCACCGCTGACCAGTCTGCTGCTCT[T/A]GAGTCTGGTCAGTCTGTCTGGTCAGATCCAGTGGTTTAGGTTTCTGTGGG
Long Flanking Sequence:
TCAGGATTGATGGATAGAAAGTTTGTTATTTGAACTGTTAGTCATTGTCTAAAATGGCAAACTTTAAAATGAACCACTCCTCTATTATATTAAGATTCTTTTCTTATCTTCCCCAAATCCTCCCAGAGCTGAATCCCAGTGGGACTGAAAATACATATATAAAAATATCTATCAAAGATGCTTTGTCTTTAAGATGCTCCTCATTTGCATCGATTTTTCGTAACTGGTCTTGGTAGTGTGTAGTAGGTGAAGGGCTTTGAGAAGGGGGCCGATCCAGGGGTCAAAGGCTGTCATTCTCCCTCTGTCTGTGCTCAACAATCCCATTATGACGGTGTAGAGGATCGGACATTTGGCTGCCCTGCCGAATACCAAAGCCTGCGTGGTGCACTGGGGTACCGAGGGGCTCTTAGGGGGTTCAGTGAAGAGTTTTGCGTTTCGGCATACGCTCATCTACCTCGTCGGGCTGAGCAGGATGGCACCGCTGACCAGTCTGCTGCTCT[T/A]GAGTCTGGTCAGTCTGTCTGGTCAGATCCAGTGGTTTAGGTTTCTGTGGGTCCCAGAGACAAGTTCACCCGCTCCTGCGGTCAGCACACCTGCAGACACCAGCAGTACTGAAGCAGCAGAGGAAAACACAGAGCACGTCCTGCCAACCTCTCCTCCTGCGCCCACAGCGGCGCCCGCCGACACAGCCAGAGCCAAGAGACCTTTGAAGAGGTGGAAGAGCGGTGAGTGCAGCTGCACTGAAAAAACAAACAGAGATTTATGGAGAGAACAAAAACATTGTGACTTCAGTATATTTCTTTGTTTATTTTTTTTAATTTAAAATAGTTTTAATGTTTTAAAAAAAAAAAAAAAATTAATATTGCTTTTTTTAGTTTGTGTTATTTTAGAAAGAGAGAAACATTTTCTTATTAGCTAATTGAAATATTTTGTGTTGTTTTTATATATTATTTATATGTTTATATATTATTATTATTATATATTTATATATACTAATATATTAT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa30818
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000088643 None None 1149 None 36
ENSDART00000111483 Essential Splice Site 84 236 1 2
ENSDART00000125548 None None 235 None 4
ENSDART00000137065 None None 899 None 35
ENSDART00000088643 None None 1149 None 36
ENSDART00000111483 Essential Splice Site 84 236 1 2
ENSDART00000125548 None None 235 None 4
ENSDART00000137065 None None 899 None 35

The following transcripts of ENSDARG00000061848 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 2 (position 23878106)
Other Location(s):
Assembly Chromosome Position
GRCz10 2 24330389
GRCz11 2 23986040
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CCCGCCGACACAGCCAGAGCCAAGAGACCTTTGAAGAGGTGGAAGAGCGG[T/C]GAGTGCAGCTGCACTGAAAAAACAAACAGAGATTTATGGAGAGAACAAAA
Long Flanking Sequence:
CTGGTCTTGGTAGTGTGTAGTAGGTGAAGGGCTTTGAGAAGGGGGCCGATCCAGGGGTCAAAGGCTGTCATTCTCCCTCTGTCTGTGCTCAACAATCCCATTATGACGGTGTAGAGGATCGGACATTTGGCTGCCCTGCCGAATACCAAAGCCTGCGTGGTGCACTGGGGTACCGAGGGGCTCTTAGGGGGTTCAGTGAAGAGTTTTGCGTTTCGGCATACGCTCATCTACCTCGTCGGGCTGAGCAGGATGGCACCGCTGACCAGTCTGCTGCTCTTGAGTCTGGTCAGTCTGTCTGGTCAGATCCAGTGGTTTAGGTTTCTGTGGGTCCCAGAGACAAGTTCACCCGCTCCTGCGGTCAGCACACCTGCAGACACCAGCAGTACTGAAGCAGCAGAGGAAAACACAGAGCACGTCCTGCCAACCTCTCCTCCTGCGCCCACAGCGGCGCCCGCCGACACAGCCAGAGCCAAGAGACCTTTGAAGAGGTGGAAGAGCGG[T/C]GAGTGCAGCTGCACTGAAAAAACAAACAGAGATTTATGGAGAGAACAAAAACATTGTGACTTCAGTATATTTCTTTGTTTATTTTTTTTAATTTAAAATAGTTTTAATGTTTTAAAAAAAAAAAAAAAATTAATATTGCTTTTTTTAGTTTGTGTTATTTTAGAAAGAGAGAAACATTTTCTTATTAGCTAATTGAAATATTTTGTGTTGTTTTTATATATTATTTATATGTTTATATATTATTATTATTATATATTTATATATACTAATATATTATATTATTGTAAAATCAAAAATAAATTATGAATAAACTATTTTCAATATAATGTTTTTTTGCAGTGTGGACGAGCAGTGAGTTTTGGTTTATTGCAAAAAAAAAAATATTTATAGTAAATTAATATAAAGATAAAAGCTAAAATATAGCTTAAATATATGTAATATAATTGTTTTAAAGCTAAAAATCCATATATACATTGCAAAAAATAATTTTCTTTCTAGAT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa39824
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000088643 None None 1149 None 36
ENSDART00000111483 Essential Splice Site 84 236 1 2
ENSDART00000125548 None None 235 None 4
ENSDART00000137065 None None 899 None 35
ENSDART00000088643 None None 1149 None 36
ENSDART00000111483 Essential Splice Site 84 236 1 2
ENSDART00000125548 None None 235 None 4
ENSDART00000137065 None None 899 None 35

The following transcripts of ENSDARG00000061848 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 2 (position 23878106)
Other Location(s):
Assembly Chromosome Position
GRCz10 2 24330389
GRCz11 2 23986040
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CCCGCCGACACAGCCAGAGCCAAGAGACCTTTGAAGAGGTGGAAGAGCGG[T/C]GAGTGCAGCTGCACTGAAAAAACAAACAGAGATTTATGGAGAGAACAAAA
Long Flanking Sequence:
CTGGTCTTGGTAGTGTGTAGTAGGTGAAGGGCTTTGAGAAGGGGGCCGATCCAGGGGTCAAAGGCTGTCATTCTCCCTCTGTCTGTGCTCAACAATCCCATTATGACGGTGTAGAGGATCGGACATTTGGCTGCCCTGCCGAATACCAAAGCCTGCGTGGTGCACTGGGGTACCGAGGGGCTCTTAGGGGGTTCAGTGAAGAGTTTTGCGTTTCGGCATACGCTCATCTACCTCGTCGGGCTGAGCAGGATGGCACCGCTGACCAGTCTGCTGCTCTTGAGTCTGGTCAGTCTGTCTGGTCAGATCCAGTGGTTTAGGTTTCTGTGGGTCCCAGAGACAAGTTCACCCGCTCCTGCGGTCAGCACACCTGCAGACACCAGCAGTACTGAAGCAGCAGAGGAAAACACAGAGCACGTCCTGCCAACCTCTCCTCCTGCGCCCACAGCGGCGCCCGCCGACACAGCCAGAGCCAAGAGACCTTTGAAGAGGTGGAAGAGCGG[T/C]GAGTGCAGCTGCACTGAAAAAACAAACAGAGATTTATGGAGAGAACAAAAACATTGTGACTTCAGTATATTTCTTTGTTTATTTTTTTTAATTTAAAATAGTTTTAATGTTTTAAAAAAAAAAAAAAAATTAATATTGCTTTTTTTAGTTTGTGTTATTTTAGAAAGAGAGAAACATTTTCTTATTAGCTAATTGAAATATTTTGTGTTGTTTTTATATATTATTTATATGTTTATATATTATTATTATTATATATTTATATATACTAATATATTATATTATTGTAAAATCAAAAATAAATTATGAATAAACTATTTTCAATATAATGTTTTTTTGCAGTGTGGACGAGCAGTGAGTTTTGGTTTATTGCAAAAAAAAAAATATTTATAGTAAATTAATATAAAGATAAAAGCTAAAATATAGCTTAAATATATGTAATATAATTGTTTTAAAGCTAAAAATCCATATATACATTGCAAAAAATAATTTTCTTTCTAGAT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa39825
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000088643 Nonsense 323 1149 6 36
ENSDART00000111483 None None 236 None 2
ENSDART00000125548 None None 235 None 4
ENSDART00000137065 Nonsense 2 899 1 35

The following transcripts of ENSDARG00000061848 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 2 (position 23898581)
Other Location(s):
Assembly Chromosome Position
GRCz10 2 24309914
GRCz11 2 23965565
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CACCTGGACCCCCTGGGCCTCCAGGAACATCTGTCCCAATCAGACATTCA[G/T]GACAGCCTGGACCGAGAGGACCACAGGGTCCAATTGGTCAGCCAGGAGGA
Long Flanking Sequence:
ACTAAGACCCACCTCTCCTGTTGAAGCCCCACCCATTCAGTCACCTGACATAGAAGAGGGTGGATTCTCAGGACATGTGACCCCAATAGATGAAAGGCTGCTGAGAGGTCAGAGCATACTATTTAAATCAAATTTGGAATATATAGATCTGATTATTACGTGTATTATAGTAAGATTATTAATAATATATGTGTATATTGGTGGTTTTGTTAAAAATTGGTTGTTATTCCTTTTAGGGACTTACAAAACAGATGAAACAGGGGAGAGGGTTGTGAGTGACAAACTTTATTTTTGGCTGTAACTGGAAAAAGGATGCAATTAATATAGTATCCACGTTGATATACTACTGTACTAAATACTAAAATACTAAAAGTCTGGTTTAAGGGCATTTTTTTCTGGGTTTTGACTAGGGACAGAAAGGGGAGCGTGGAGAACCTGGGCCTGCAGGGCCACCTGGACCCCCTGGGCCTCCAGGAACATCTGTCCCAATCAGACATTCA[G/T]GACAGCCTGGACCGAGAGGACCACAGGGTCCAATTGGTCAGCCAGGAGGACGAGGCAGACCAGGGAAAGATGGACAACCTGTATGAGTATATGTTTATTAGGATGTGATGTTTAGAATATGCTCTGATGACAATTTTCTTACTTGTTTTAATGACTTATACGCTTTATTTTTTTAACTATTGCATGTTTTACAGGGAAGCAAAGGTGAAGATGGGAAACCAGTGAGTATTCATTTTTTGTTGAGATATGAACTCAAGATATAAGAGCTCAAAATAAGGACAAAAAAACACTTAAAATTGACCCATTAATCCAGAACTTTGAGATGGCCAGATGACTTAAAATGTTATATAATAAAGTCTTTAATGGCCTCTGTGGTTCCACAATGGACTTTTAATATACATGGAACCTTTCCATTTCACAAAAGATTCATTGAAAAGCTTCTAATTACGAAAATGTTCTGCACACTAAGAAAAAAAAAATATTTGTGTGTATATATACAT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa11640
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000088643 Essential Splice Site 429 1149 10 36
ENSDART00000111483 None None 236 None 2
ENSDART00000125548 None None 235 None 4
ENSDART00000137065 Essential Splice Site 108 899 5 35

The following transcripts of ENSDARG00000061848 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 2 (position 23902855)
Other Location(s):
Assembly Chromosome Position
GRCz10 2 24305640
GRCz11 2 23961291
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ACTGGGCTCTGGATTTGGAKATGCTGACATTGATACAGAACTTCTTCGGG[T/C]GAGTAAAATCARTTTTTGAAGACATGGNTTAAGCTATTTCAGTAAGACTT
Long Flanking Sequence:
AGCTGACCAAGCTGGGGCTCGAACTAGCAACCTTCTTGCTGTGAGACATTCATGCTACCGACTACACCACCGTGACACCCTATCTTTTAGATATCTTAGATATTAGATATATTATTTTGTGTTTAAAAGAACAAAGAAACTCAAACAGGTTTGTAACCTCTTGAGGTTGAGTGTGAGTTTGTAGTAAGTAAATTATCATTTTTGCCTGAACTATCACTTTAAACCTTCCTGACACAACATACTGACACATCAAAAAGCACTCTAGAGAGGCCTTATAGTCATCATTTAGGACGATGATTTTGAACCTTTAAAATATATTTGCTGCATTAGTATTTGAAACTTGTTTAGGCGGCTGTACATCTGGTGTAGACTGATGTAGAACTCTTCATACTGTGCATACTTAATACTTAAAATGTATATTCATTTTTAATGACAGTATGGATTTGATGCACTGGGCTCTGGATTTGGAGATGCTGACATTGATACAGAACTTCTTCGGG[T/C]GAGTAAAATCAGTTTTTGAAGACATGGTTTAAGCTATTTCAGTAAGACTTATCAGCAGATATATCAATCTCTCTGACCGATAAGATGATATTCTAGGGTCCACCTGGTCCTCCAGGGCCTCCTGGGATACCCGGCCCTCCTGGTCCTAATAGCCCACTTGGAGGATTGCTCCCTGGTCCTCCAGGGGCTCCTGGCAAAGATGGCAGAGATGGGCAGAGTGGGCTCCCTGTGAGTACTGTATGCTTTCTTTTCAATTTAATCAGTTAATGGAGAAAGATTCTGGTTAGGTGTTGAGAAAGATTGATTTTCCACTTGTCTACTCTGTACTTCTGAAGACACTCAGACAACTTAAAAATTCATTCAGACAACTTCACATTAGATCAATGTAGATTAAGAAGTAACTCACTGATAAATTATTAACTCACTCAAGCAATACCCGAGACCTCCTACTGATGCTAAATGATGGTTGTAGCACAGTGCTCAGCTGATTCATGTTGTCT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa12573
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000088643 Nonsense 802 1149 28 36
ENSDART00000111483 None None 236 None 2
ENSDART00000125548 None None 235 None 4
ENSDART00000137065 Nonsense 477 899 23 35

The following transcripts of ENSDARG00000061848 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 2 (position 23915308)
Other Location(s):
Assembly Chromosome Position
GRCz10 2 24293187
GRCz11 2 23948838
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TAATTATTTATAATGACTCATCTATTTTAAAGGGTCCACCAGGTCCACCT[G/T]GACCTCCAGGGCCACCAGGWCGAGTGATTGGCCTCAATGGAGTAAGTTTK
Long Flanking Sequence:
TTCTTTTTATGTGTATTTGTGTTGTGTATGTGTACTGGTTTTGGTAATTTACAAGGTTATTTTTTTAAGTTGTATTCTAGTGGTTTACAAGGACATACCTGATATCCTTGTAATTCAAAACACTAAAAATCAAACCTAATGGGGTCTTTTCCTATTCAAATATTGCCACAGGTTTCCTGTGAGGGTTGGGTTTAGGGTTAGGGGTGAAGTAGAATAATATAGTAAGTGTTTTTTACTGTATACATTACACCTATGGAGTACCCGTGTTAATTTGTAGTTTTTAATCTCATAAATGCTTATTTCCTTAAAGGGTCGACCTGGAATAGCTGGAAGGAAAGGGGACAAGGGAGATGCAAGTGGTCCCTCTGTAAGTTTTTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTTTGTGAGTGTTCATTTTGTTTCATATCTTACAAACTAATTATTTATAATGACTCATCTATTTTAAAGGGTCCACCAGGTCCACCT[G/T]GACCTCCAGGGCCACCAGGACGAGTGATTGGCCTCAATGGAGTAAGTTTTAACCTTTTAGCACATTTGATGTGCGCTGAAAATGAGCATCAAATTGTGGGTTATCCTAACATGTGCAGTTTTCTCATGAAAGTCATGAAATGATTGTGCTCTGAATCTTAAAGACAGTTTTCCCAGTTCCTCCTAGACCACACTGCAAAACGCCAGTAAGTTAATAATTGAGGGGTTTGGCTTTGGGTATGGCGCATGTCATTCTGGCTTGGCTCCTCCCCTCATACACTAGCCCTGCCTACTTCACTGTCTAAGGTGCTTTGGATTATTTCTGGGCTGGCTCAAGGTCTAAAAAACAGCATAGAGCAAGCTTAATTTACAAAACAGATCAATATATTTAAAAGGGACAGCACACACAAAAATTATAATTCACTGAGAGTTTAAAAACAACACATACAGGCTTAGCAAAATGGCTTCTGAAGACACATTGAGGACTTAAAAAGCAAAACA
Associated Phenotype:
Not determined