Busch Lab

ZMP

sema3d

Ensembl ID:
ENSDARG00000017369
ZFIN ID:
ZDB-GENE-990715-2
Description:
Semaphorin-3D [Source:UniProtKB/Swiss-Prot;Acc:Q9W6G6]
Human Orthologue:
SEMA3D
Human Description:
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D [Source:HGNC
Mouse Orthologue:
Sema3d
Mouse Description:
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D Gene [Source:

Alleles

There are 9 alleles of this gene:

Allele Name Consequence Status Availability
sa1661 Nonsense Available for shipment Available now
sa15069 Essential Splice Site Available for shipment Available now

Mutation Details

Allele Name:
sa1661
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000101192 Nonsense 257 291 8 8
ENSDART00000127469 Nonsense 257 766 8 18
Genomic Location (Zv9):
Chromosome 18 (position 8677228)
Other Location(s):
Assembly Chromosome Position
GRCz10 18 9254606
GRCz11 18 9212625
KASP Assay ID:
554-1608.1 (used for ordering genotyping assays)
KASP Sequence:
ATCCCTACAGAGGGCAAGTTCATTTCTGCCCATCCCATCTCAGACACCTA[C/A]AATCCTGACGATGACAAGATTTACTTCTTTTTCCGTGAGGCTTCTCGTGA
Long Flanking Sequence:
AAAGAACCAAAAGGCAGCCGTTCTGGCATGTAACTCACATTTTCAAAGCTGAATTTCTGACTTAGTATTGTTTTTCAGGTAAACAAGAATATTCACTCAGCATGTTTCTTAACAACTGCAAACATATTATGGTATTTGTATGCTTTAGAAGAGTAAAAAACTTACATACAACACCTTTAAGCCTAGTTTTACTAACAGCCAGTGCAAAAGTTTAGTTTATTTAGGTTTTTAGGCATGGACTCAGTTGTTTTTGCAGCAGACCTTATAACATTTGCATTTATGTTAAAGGTACTCTTACTAAAGTATAGTTTATGGGAGAAGATTAATTTAAGTTTGCATTTACTGGTAACAATTTTAATAAGCGTCCACACTTTCTTACAAGATTATAAAGGGATTGGTTGGATTACCATCACAGATATAAATTAAATCTGATCAGCTTTTGTCTCTCTTATCCCTACAGAGGGCAAGTTCATTTCTGCCCATCCCATCTCAGACACCTA[C/A]AATCCTGACGATGACAAGATTTACTTCTTTTTCCGTGAGGCTTCTCGTGATGGGAGCACTACAGACAAGAGCGTGCTGTCTCGTGTCGCCCGGATCTGCAGGGTAAGGCCCGTCCTCACGCTGCCTGATCACAGAGAAACTCACCTCATCTCTCTGATCCTCCTCAGAACTGAAGATTAAATGTGCTTCCTCTGGGGGGAGAGGCTTCCTGGTACGTTTCCCTTGATGTGATCTGCTGAAAGAGGACCAAACCACTGTCAGGCTGGGTAAATCAAAGTAGAGGTCTGGCCATGTAATTGCTGCCTGGACTGTCATTCCTGATCAGATGATCAGAGTCCCTTGGGTTGAGAAATTAATGTGTTAAGTGACTCCATTGTGTTAACACACAGCTTAAAGGGATAGTTCAAAATATGACAATTTAAACACTATTTACTTCCTCAAGTGGTATAATTTTCTTATTTTCTTAATACAAGATTTTTTTTTTTTTAAAAGAAAGCTGA
Associated Phenotype:
Normal
Stage Entity Quality Tag
Larval:Day 5
ZFS:0000037
whole organism
ZFA:0001094
quality
PATO:0000001
normal
PATO:0000461

Mutation Details

Allele Name:
sa15069
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000101192 None None 291 None 8
ENSDART00000127469 Essential Splice Site 641 766 17 18
Genomic Location (Zv9):
Chromosome 18 (position 8693781)
Other Location(s):
Assembly Chromosome Position
GRCz10 18 9271159
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CTTGAWCCGCTGGTTTGTACTGAAGCCAGGAGTGGACCACCGTCAAGAGG[T/C]ATCAGTAACCTAGAGTRYATCAGTGTGTGTGTGTGTGTGTGTGTGTGTGT
Long Flanking Sequence:
GGACACAGAGGATGGTAAGAAAGCATATGAGGGCGTACAGTCTGTGTGTGTGTGTGTGTGTGTGTGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTCTCTGTGTGTGTGTGTGTGTGTGCGCAGCATAAAAGCACTAAAAGCTCTGTTTTGTTTTAAGATGCTGCATTGTCCTGTGGGGCTCACCTAATGGACCTCAATGTTAACCCAAAAAAATGTCTTTTTGATATGCTGATCGCTCCCTCTCTCTTTCGCTTTTGCAGTGTTAGGGAGGAATGTCGAGGAGAAGGTGTTGTACGGAGTGGAGAGTAACTCCTCTTTTCTTGAGTGCGTTTCGAAATCCCAGCAGGCCTTGATCCGCTGGTTTGTACTGAAGCCAGGAGTGGACCACCGTCAAGAGG[T/C]ATCAGTAACCTAGAGTACATCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCTGTGCGTGTGTGTTTTTTGTTCACCTACTTTGTAGCTACACTGAAAAAATATTCATTGGATTTACTAGATTTTTTAAGGTAACTGGTTGCAAACAATTCAACACAGGGTCATTCTGAAAACGTAGCCCTATATACATTTCTGGAGGTCGCAAATTATGTAGTCAGAAGTACGTGTGGCTGCATTTCATCTTTCATCTTCCTTTTCATGCTTACCAGCTGACCACTTACCTCCATGTGGACAGCTTTCCCGTTGTTACCAGTTTGTCCAGTGGTTTGCACCATACGTTGGCCCCAAGACCCCGACAATGGGGTTCAAGTCTGATGAAGGTTGGTTCCAAAAAGCAGGTAAAACAAAAACAAAAGGCAAAAAATAAAATAAATAAGTAAATAACAGTGT
Associated Phenotype:
Not determined