Busch Lab

ZMP

col8a1b

Ensembl ID:
ENSDARG00000003533
ZFIN ID:
ZDB-GENE-060503-140
Description:
Novel protein similar to vertebrate collagen, type VIII, alpha 1 (COL8A1) [Source:UniProtKB/TrEMBL;A
Human Orthologue:
COL8A1
Human Description:
collagen, type VIII, alpha 1 [Source:HGNC Symbol;Acc:2215]
Mouse Orthologue:
Col8a1
Mouse Description:
collagen, type VIII, alpha 1 Gene [Source:MGI Symbol;Acc:MGI:88463]

Alleles

There are 2 alleles of this gene:

Allele Name Consequence Status Availability
sa29815 Nonsense Mutation detected in F1 DNA Not yet available
sa14358 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa29815
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000019846 Nonsense 83 731 1 2
Genomic Location (Zv9):
Chromosome 22 (position 29926952)
Other Location(s):
Assembly Chromosome Position
GRCz10 22 28700075
GRCz11 22 28650196
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CCTTTGGAAATGAGATGCCTTTGCTTCCACAGTATGGGAAGGAACGTCCA[C/T]AGTTTCCCATGCATATGGGCATACCGATTGCAAGAAAAGGTTGGTAATTT
Long Flanking Sequence:
TAGTAAGTTAAAATGTTTATCTAAAACTCAGTCTTTTACTGATTGTTGATTGCTTAGTTCTGGTAGGGAGACAAACCAATAAACTTATGGGTATCAGCTCTTCAACCAGACATATAACAATGAGCTGTTTCAGTAAAAAAATAAATAAAAAGGGATTTTGCTAACCTTTGATCTGGACCCTGACTACTAACTTTCCTGAATTTTAGAAGCCTACTAATTACAAATGTCTATGCTCTATTCAACAGGACATGGCTGGGCCTCTCCTCTCTGCCTGCTTGTTTGTACTGGTGGAGCATTTGTGCCTGCTACATCATATCCATGCGGGGGCATTTTATGGACACAAACCATTGCCTCAAAAGCGCCAGCCTCTGCCACAGTTACCTCTTCTACCACATGGCAATGAAGGAATAACACAACACCATTACCATGGAAAGGAAATCCCTCAACTTCCCTTTGGAAATGAGATGCCTTTGCTTCCACAGTATGGGAAGGAACGTCCA[C/T]AGTTTCCCATGCATATGGGCATACCGATTGCAAGAAAAGGTTGGTAATTTTGCTAAACACTTTACATTACTTTATATTCACTTAAAGCTTTAATAGAATATTGGTAAATTATTTTCTCAGGGTTGCCTGGATAATTTAAATGAACTGTAAATGCAATGCAATGTTTATTTAAAGAAAGCATTTTAATGGATGAACCACTTAAAAACACCTGTCGTCATATTTAATCAGATTTTTCCATATTTTTTCCATAATATACATCTGGTGAATTATATATGTATTAAAAATATTTCATACTGTTTATATTTTTGACCATGTCATTTTTATCCATTCATTTTAACATCCTATTTGACTGTTTTAAACAATGCTTTCTTGTTTCTATTCTTTCTATTCTTTGTTTTTTTTTTCAGGTGAAACAGTTCCAAGAGGACAGAAAGGTCCTCCTGGAGAGCCCGGTCCGATAGGGCTTCAAGGGCCTCGGGGCCCTCCGGGACTTCCTGGTC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa14358
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000019846 Nonsense 714 731 2 2
Genomic Location (Zv9):
Chromosome 22 (position 29929215)
Other Location(s):
Assembly Chromosome Position
GRCz10 22 28697812
GRCz11 22 28647933
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GGAGACACTGTTCAMGTTCAGTTACCATCAGAGCAAGCAGCAGGACTTTA[T/A]GCTGGTCCTTACRTCCACTCATCATTCTCTGGGTATTTGTTATATCCNNN
Long Flanking Sequence:
ATACCTGGTCCTCCTGGCCCACCTGGGCTACCTGGACCTCGTGCTCAAGCTTCATTTTTTGGGCAAATACTTCCTGAGACAGGTCCTGGGCTTGATGGGGAAAAAGGTGGTTATAAGAAAGAAAAGCCTGGAGGAGCTATTATTGGTAGGCATGGCCTAGAAATGCCTGCATTTACAGCTCAGCTGACAACCCCATTTCCCCAAGTTGGACAACCTGTTGTCTTCAACAAAATTTTGCATAATGGAAACCAAAATTACAACTTGCAAACTGGCATCTTCACATGCAAAATACCTGGAATTTACTACTTTGTCTACCATGTTAATTGCAAAGGAAACAATGTATGGGTGGGTTTATACAGAAACAATGAGCCAGTTATGTATACATATGATGAATACAAGAAAAGTTACCTGGATCAGGCATCAGGGAGTGCTGTACTGCCCTTAAACTTTGGAGACACTGTTCACGTTCAGTTACCATCAGAGCAAGCAGCAGGACTTTA[T/A]GCTGGTCCTTACGTCCACTCATCATTCTCTGGGTATTTGTTATATCCTATGTGAATATGTGAAAAAATGCATAAACAATCACATGTTTTTACATGTTTCTAGTACCACAAAGGCAATGGTTCTTAGTAGAAAATAAGACAATGCTAAATATATGATTACACGTACACATAATTTGAAAACCATTTCACAGTAACTTTAGGTATTTGTTCAACCATATGGTAAGCACTTTGTTATCACATTATTTATTTGCATATGACAGTATAATGATTGTAATTGACATTGACTGCACATCAGTGTAATATGATGTGATATTGCCATAATAAGGAATGTTCACATTGTTGGATATGCACTATTTTTCTGCTGTCTTAGTTTTTCTTTTAACCATCTCAATAAATTTCAGGAAAGTATGTGAGCACATGCAAACAGGTTATCTCATTAACTAACAGCATAAGTAAAATACATATCTAAAAACTTCCTGAAACTTTCATTTACAAAAGCTT
Associated Phenotype:
Not determined