ZMP

col28a1

Ensembl ID:

ENSDARG00000077084

ZFIN ID:

ZDB-GENE-070705-84

Description:

Novel protein containing collagen triple helix repeat domain [Source:UniProtKB/TrEMBL;Acc:A5WUJ9]

Human Orthologue:

COL28A1

Human Description:

collagen, type XXVIII, alpha 1 [Source:HGNC Symbol;Acc:22442]

Mouse Orthologue:

Col28a1

Mouse Description:

collagen, type XXVIII, alpha 1 Gene [Source:MGI Symbol;Acc:MGI:2685312]

Alleles

There is 1 allele of this gene:

Allele Name	Consequence	Status	Availability
sa17603	Nonsense	Available for shipment	Available now

Mutation Details

Allele Name:

sa17603

Status:

Available for shipment
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Availability:

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Mutation:

C > T

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000112808	None	807	1170	31	34
ENSDART00000132934	None	None	312	None	7
ENSDART00000143292	Nonsense	125	133	6	6
ENSDART00000144300	None	None	313	None	14

Genomic Location (Zv9):

Chromosome 19 (position 25991620)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	19	25921732
GRCz11	19	25505955

KASP Assay ID:

2261-3337.1 (used for ordering genotyping assays)

KASP Sequence:

GGRTGTGGTGTGAAATGCCGGACGAGTCCACTGGAGCTGGTKTTTGTTAT[C/T]GACAGCTCAGAAAGTRTGGGTCCAGATAACTATGAAGTGGTGAAGGATTT

Long Flanking Sequence:

GATTTGCAGAGGGTCTGAAGAGAGCACATACATTGTTGTATAACTCTAGATCAGGTATGATCTTTAATCCAACTCAAGACAGTCTCCAAATGCTCTCAAGTCAATAGTAAGAAAATGAAAATCAAGACTTAAAACTTGCATGTTTTGGTCGAAAACACACTAAAATAAAGCATCCTGAAATTTACTAATAAAATTCTACTTAAATTTTAGGGAAAGCCTGGAGAGAAGGGAGATCCTGGCCTATCTGTGAGTTAAAACATTTTCCTCAGTTGTTTTTTTTCATCAGAACACTCACTAATATTGTACAAATAACACTGAACTATACCTCGCAGAGAGAAGAGGTGATCAAAATAATCCGGGAAATATGTGGTATGTTTTGGTACTCTAACACAAACTAAATGGGCATCCTGTGTTAGGTGGAAACACTTCATTTTTGTGTGTTTTCTCCCAGGGTGTGGTGTGAAATGCCGGACGAGTCCACTGGAGCTGGTGTTTGTTAT[C/T]GACAGCTCAGAAAGTGTGGGTCCAGATAACTATGAAGTGGTGAAGGATTTCGTAAACTCTCTGATTGATCATGTGTCTGTAAGCCGTGAGGCCACACGTGTTGGGGTGGTGCTCTACAGTCACGTGGAGGTGGTGGTGGCCAGTCTGCAACAGCTGTATGACCAGGCTGCTGTCAAGACTGCTGTGCGCAGGATGCCATACCTGGGTGAGGGCACCTTTACAGGGAGTGCCATCCGACGGGCAACTCAGCTGTTCCAAGCAGCACGACCAGGAGTTAGAAAGGTTGCGGTTGTGCTGACGGATGGCCTGGCAGACAACCGGGATGCAGTGAGTTTAAAAGATGCTGCAGAAGGTGCACACAGTGCTGGGATTGAAATCTTTGTAGTTGGTATTGTGAACAACAGTGACTCTCAGTATGCAGAGTTTAAGAATGAGATGAACATTCTGGCATCTGATCCAGATGAAAATTATGTCTACTTGACTGATGACTTCTTGAAACT

Associated Phenotype:

Not determined