ZMP
pcdh1
Ensembl ID:
Human Orthologue:
PCDH1
Human Description:
protocadherin 1 [Source:HGNC Symbol;Acc:8655]
Mouse Orthologue:
Pcdh1
Mouse Description:
protocadherin 1 Gene [Source:MGI Symbol;Acc:MGI:104692]
Alleles
There are 7 alleles of this gene:
Allele Name | Consequence | Status | Availability |
---|---|---|---|
sa17938 | Nonsense | Available for shipment | Available now |
sa35735 | Nonsense | Mutation detected in F1 DNA | Not yet available |
sa10175 | Nonsense | Available for shipment | Available now |
sa42430 | Nonsense | Mutation detected in F1 DNA | Not yet available |
sa35736 | Nonsense | Mutation detected in F1 DNA | Not yet available |
sa28349 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa17938
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
G > A
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000105588 | Nonsense | 9 | 1093 | 1 | 4 |
Genomic Location (Zv9):
Chromosome 14 (position 38827707)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 14 | 37212860 |
GRCz11 | 14 | 37553174 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ATCTTTTGCAGCAACAGACTGACGATGTGYCAGAGTGCCAATGCGATGTG[G/A]TCACGGTGGAGTGCCATGCTAGWGTGGATTTTGCTTCTCCTCTGCTGCTC
Long Flanking Sequence:
GGATTTTACCCTTTTGCTGACCCCAGGCACGATTCTGAAAATGAACATCAAGACAGTTTATCAATAGCTTGGAAACGGTAGATCAAGTAGAGCAAAAACAAATATCATTTCAATGGGCATCAGTTGTCTGCTATCTTCCTCCTCTCTTAGGGTCAGCCAGCCAATGCATCTCTTAGGAACACTGACATATGTTGTCTTTATGAATTAGACATGACATGAAGTTTGCAGAATGAAGGTCAAACACAAGTAACTGTTTGTGACACATTTACTGCCTCTAAAAAGGAGAGGTTTACAACACATGAAGGGGCGATCAATCATAAATCCCAGGGAATCAGTACCATAAAACTCTGTGGCTGCCATCGTTTACGGGCTTCTTGGCACTGTCAGAGACTTTGAAGGATTGTGTCTGAGGAATGAATGTTTCTCTAATCGCATTTGTTTGTTTGCTTGATCTTTTGCAGCAACAGACTGACGATGTGCCAGAGTGCCAATGCGATGTG[G/A]TCACGGTGGAGTGCCATGCTAGTGTGGATTTTGCTTCTCCTCTGCTGCTCTGCAAATGTAGTCAACACCATTCTCTACCAGGTGACCGAGGAGCAGCCGCCCAACACCCTGATTGGCAGCTTGGCATCTGACCAGGGCCTGCCAGACACAGGTCACCTTTACAAGCTGGAGGTTGGTGCTCCTTACCTCCGCGTGGATGGCAAAACCGGGGATATCTACACCACGGAGAACTCTATCGATCGGGAGTCTCTTAAAGACTGTCGCAACCTTTTCGAGGGCGATCCTTGTTTCCTAGAATTTGAGGTGTCTATTACAGACCTGATGAAAGGCACAGGACCTCGGCTTATTGAAGGCCGCATTGAGATCTTGGATGAGAACGACAACACTCCACAATTCTCCTCACCCGTCTTGACATTGTCGATCCCAGAAAACACTCACGTGGGTGCACTTTTTGCAATTCCTGTAGCCACGGACAGGGATTCTGGAAGCAATGGCATTGC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa35735
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000105588 | Nonsense | 208 | 1093 | 1 | 4 |
Genomic Location (Zv9):
Chromosome 14 (position 38828303)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 14 | 37213456 |
GRCz11 | 14 | 37553770 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CCTGCAGGTGGCACAAGACTCTGACGAGAAATTACCGCAACTCATTGTAT[T/A]GGGTAACCTGGATAGAGAACTGCGAGATTCATACGACCTCAATATAAAAG
Long Flanking Sequence:
GCCGCCCAACACCCTGATTGGCAGCTTGGCATCTGACCAGGGCCTGCCAGACACAGGTCACCTTTACAAGCTGGAGGTTGGTGCTCCTTACCTCCGCGTGGATGGCAAAACCGGGGATATCTACACCACGGAGAACTCTATCGATCGGGAGTCTCTTAAAGACTGTCGCAACCTTTTCGAGGGCGATCCTTGTTTCCTAGAATTTGAGGTGTCTATTACAGACCTGATGAAAGGCACAGGACCTCGGCTTATTGAAGGCCGCATTGAGATCTTGGATGAGAACGACAACACTCCACAATTCTCCTCACCCGTCTTGACATTGTCGATCCCAGAAAACACTCACGTGGGTGCACTTTTTGCAATTCCTGTAGCCACGGACAGGGATTCTGGAAGCAATGGCATTGCTGATTATGCGCTAACCACCGGCCCTGAAGCTACCAACCTTTTTAGCCTGCAGGTGGCACAAGACTCTGACGAGAAATTACCGCAACTCATTGTAT[T/A]GGGTAACCTGGATAGAGAACTGCGAGATTCATACGACCTCAATATAAAAGTGGTTGACGGCGGCTCTCCACCCCGCCAGAGTAGCGCCCTCCTCAGGATCACCATAACAGATGCTAATGACAATGTCCCCAAGTTTGAGAGGTCACACTACGAGGGTGAGCTGCCAGAAAACAGCCCAGTGGGTCATTCTGTCCTTCAAGTAAGTGCTTTTTTCAGTATATTTGATTTCCATTACACATTTAAATTATCTTAATGACTGTGAATATAAATATTTGCTTTAATATAGAGGAATAAACGTACATTTTCCTCTCCTATAAGCTTAAAACATCTGTAAGCAAGTATGCATTATGCTAAACCTTCAGATTGGACGTTAAGTAATAGTGGAGCTGATTTGACAGCCTGGCAATAGAAGTGCACTCAAGCCCCATGTACAAAGCTTGACAAGCTGTTGTAAATGGAAGTCTCTGTTATCCCAATGGGCTTTAGCCTCGGTTCCCACA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa10175
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000105588 | Nonsense | 290 | 1093 | 2 | 4 |
ENSDART00000105588 | Nonsense | 290 | 1093 | 2 | 4 |
Genomic Location (Zv9):
Chromosome 14 (position 38830121)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 14 | 37215274 |
GRCz11 | 14 | 37555588 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TAGGTGAAGRCCAATGACTCTGACATGGGACCCAATGGTGAGGTTACCTA[C/A]AGCCTCCATCAGCCATCATCACCAGTGATGAGACTTCTAAGCATTGACCG
Long Flanking Sequence:
TCTAGCAAACTACCGATAATTTTGCACAACTTGACTTGCATACTAGACAACCTAATCATATTTAACTCTTCAGAGTCAATGTTCGTTGTATCATATATTGAATAATAATACATTATATGTTATGCTGTTAAGGTGAATGCCATTTTTTGCAATCAAATGAAATGTACTGTTTTAAATTCTTGCAATATTCAGCAAGTATAAGAGTTAGTACAAACTAGTGCATTTAGGTCTTTTTTCAGTTTATAAAGCATATATTTTTTCACATGCATATATATTATTGCTTGCATTAATAATAGTCAATTTCTAGTGCTACATAATAATAATTTAAACCATGTGTGGCCATTGATGTGTAAACCTGTGACTTATATAGTTTGTTAATTAACTTTATGGAACCTTTTTTGTCATGATGTGTTTGTGCTTTGCCTAGTTTAATTTTGAATTTTGTTGTTTTAGGTGAAGGCCAATGACTCTGACATGGGACCCAATGGTGAGGTTACCTA[C/A]AGCCTCCATCAGCCATCATCACCAGTGATGAGACTTCTAAGCATTGACCGCAACACAGGCATCATTTTTGTCAAAGGCTCAGTAGATCGTGAAGAAATCAGCATTCTCAAGTTCTACGTCCAAGCTAAAGACAACGGTCCTCAGTCAAAGAGCTCCAAAGCCCTTGTGACTATCACAGTGAAAGATCAGAATGACAACGCACCCTCCATTAGAATCCGAGGCATTGGCCTTGTAACGCATGAAGATGGTGTCGCTAACATATCAGAGGACATGCCTGTTGGCACAGCTGTGGCTTTGGTGGAGGTATCAGATCGTGATGAGGGCGAAAATGCAGTTGTTACCTGTGTGGTTGCTGGGGATGTCCCGTTCCAGCTACGCTCAGCAAGTGAAACAGGCAATGACCGCAAAAGGAAGTACTTCCTCCAGACGACCACGCTACTGGACTATGAACGGATCAAAGAGTATAGGATTGAAATTGTAGCAGTGGACTCTGGCAACCC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa42430
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000105588 | Nonsense | 363 | 1093 | 2 | 4 |
Genomic Location (Zv9):
Chromosome 14 (position 38830338)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 14 | 37215491 |
GRCz11 | 14 | 37555805 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGACTATCACAGTGAAAGATCAGAATGACAACGCACCCTCCATTAGAATC[C/T]GAGGCATTGGCCTTGTAACGCATGAAGATGGTGTCGCTAACATATCAGAG
Long Flanking Sequence:
GTGCATTTAGGTCTTTTTTCAGTTTATAAAGCATATATTTTTTCACATGCATATATATTATTGCTTGCATTAATAATAGTCAATTTCTAGTGCTACATAATAATAATTTAAACCATGTGTGGCCATTGATGTGTAAACCTGTGACTTATATAGTTTGTTAATTAACTTTATGGAACCTTTTTTGTCATGATGTGTTTGTGCTTTGCCTAGTTTAATTTTGAATTTTGTTGTTTTAGGTGAAGGCCAATGACTCTGACATGGGACCCAATGGTGAGGTTACCTACAGCCTCCATCAGCCATCATCACCAGTGATGAGACTTCTAAGCATTGACCGCAACACAGGCATCATTTTTGTCAAAGGCTCAGTAGATCGTGAAGAAATCAGCATTCTCAAGTTCTACGTCCAAGCTAAAGACAACGGTCCTCAGTCAAAGAGCTCCAAAGCCCTTGTGACTATCACAGTGAAAGATCAGAATGACAACGCACCCTCCATTAGAATC[C/T]GAGGCATTGGCCTTGTAACGCATGAAGATGGTGTCGCTAACATATCAGAGGACATGCCTGTTGGCACAGCTGTGGCTTTGGTGGAGGTATCAGATCGTGATGAGGGCGAAAATGCAGTTGTTACCTGTGTGGTTGCTGGGGATGTCCCGTTCCAGCTACGCTCAGCAAGTGAAACAGGCAATGACCGCAAAAGGAAGTACTTCCTCCAGACGACCACGCTACTGGACTATGAACGGATCAAAGAGTATAGGATTGAAATTGTAGCAGTGGACTCTGGCAACCCTGCACTATCCAGCACTAATTCTCTGAAGGTGCAAGTGACAGACATGAATGACAATGCCCCAGTGTTCTCGCCTACTTTGTATGAGGTAGAATTTTTTGAGGAGAACCAGCCAGGTGACAAGGTTCTGGATGTGGTAGCCACAGACGCCGACAGTGGGACTAATGCAGAGTTGACATACAGCATCACTGGTGGATCAGTTCCTGAGGGGCTCTTTGAA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa35736
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000105588 | Nonsense | 551 | 1093 | 2 | 4 |
Genomic Location (Zv9):
Chromosome 14 (position 38830904)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 14 | 37216057 |
GRCz11 | 14 | 37556371 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GGAGAAGTGCGTGTCATGAGCCAGTTGGACCGTGAACAATTAGATCACTA[T/A]CAATTTCTGGTCGCAGCAGCTGATAAAGGTGTACCAAGCCTAAGAGGAAC
Long Flanking Sequence:
ACAGCTGTGGCTTTGGTGGAGGTATCAGATCGTGATGAGGGCGAAAATGCAGTTGTTACCTGTGTGGTTGCTGGGGATGTCCCGTTCCAGCTACGCTCAGCAAGTGAAACAGGCAATGACCGCAAAAGGAAGTACTTCCTCCAGACGACCACGCTACTGGACTATGAACGGATCAAAGAGTATAGGATTGAAATTGTAGCAGTGGACTCTGGCAACCCTGCACTATCCAGCACTAATTCTCTGAAGGTGCAAGTGACAGACATGAATGACAATGCCCCAGTGTTCTCGCCTACTTTGTATGAGGTAGAATTTTTTGAGGAGAACCAGCCAGGTGACAAGGTTCTGGATGTGGTAGCCACAGACGCCGACAGTGGGACTAATGCAGAGTTGACATACAGCATCACTGGTGGATCAGTTCCTGAGGGGCTCTTTGAAATTAACCCTAATACAGGAGAAGTGCGTGTCATGAGCCAGTTGGACCGTGAACAATTAGATCACTA[T/A]CAATTTCTGGTCGCAGCAGCTGATAAAGGTGTACCAAGCCTAAGAGGAACTGCCACTGTTGTTGTTAAGGTGCTTGACAGGAATGACAATGACCCTAAATTTATGCTGAATGGTTATAGTTTTTCAGTCCAAGAGAACATGCCACCACTTAGTCCTGTTGGAATGGTAACAGTCAATGATCACGATGAAGGTGAAAATGCTCGTGTTCAACTTTCTGTAGAACCAGACAATGGAAAGTTTATGATTCAAAATGGAACGTACACCATCCTCTCGACTATTTCCTTTGACAGGGAAAAGGAGAGCACCTACAGTTTCCGATTGAAAGCTGTTGATGGAGGTGACCCACCACGCTCCTCCTACGTTGGCATTACTATTAATGTTCTTGATGAGAACGACAATGCTCCCTATGTAACCAAACCCGCAAACTCCTCATACAAGTTCTTGGATCCCCGCACCAGCCCAGAAACCCACGTAGAAAGCGTTGAGGCAGAAGACATTGA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa28349
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000105588 | Essential Splice Site | 1003 | 1093 | 3 | 4 |
Genomic Location (Zv9):
Chromosome 14 (position 38987028)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 14 | 37372181 |
GRCz11 | 14 | 37712495 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GTCATCGGCTTGTCCACTGACCTTTGACTTCTCTCTCTCTCTCCAATCAC[A/C]GCTCCCACATCGCCGAGTGACCTTCTCCACAGCCAATCAGGCGCAGGATC
Long Flanking Sequence:
TATCAAGATAAGTGTGCTAAGGTCTATATAAAAGTGTACCTCTTCCCAAAAGGGAAAACCAGCAAAAATTATGAATGCATGATTATTTGCTGTCATAGCTTTGCAATTACATCTTACAATGTCTTCATAATGAAGGGTAATGGGGCAAAAACAGCCCTGAACATAACAAAATGGTAGTACATTTGCTCAGTGTATTGTTGATTTTTTTTTTTTAAAGTCAAAGCATTTTCCCAAAATATGTGTCAAAATAAGATATTTCACCAAAAAAATTATTCCATTTGCTGAAACACAGAGAAGGCTGTGGCCAAATTAAAACTCAAAAATCAACCCCGAGTGGATGAAAACATCCCCAACAGTACACAAGGGTTAAAAACTTGTTTTTATTGTGGTATATCATACATGGTGGTTACATTTTAATAACCTAAAATGTACCCTTTTTAATGTGATAATGTCATCGGCTTGTCCACTGACCTTTGACTTCTCTCTCTCTCTCCAATCAC[A/C]GCTCCCACATCGCCGAGTGACCTTCTCCACAGCCAATCAGGCGCAGGATCTTCAGGACCCCTCTCAGCACAGCTACTATGACAGCGGTCTGGAAGAGTCAGAGACGCCCAGCAGTAAGAGTTCTTCAGGGCCCCGTATCGGCCCCCTCGCCCTTCCCGAAGACCACTACGAGCGCACCACCCCGGACGGCAGCATTGGAGAGATGGAACACCCCGAGAACGGTAAGAAGAGAAGGCGTGTCCCCCTCCTTTTACTTTCACTCCATCTCTTTTCTTTTACATTTTCTGCATCTCAAAGTTTGAGTTTTTTAAATGGCGACACACTACAGGCAAACACACTGTTTTCATGCACCTGTCAGTTTGGAGAGTTTTGGCTTTTCATTATTGTTTTTTTCAGACGTAGTGGTTAGAAAATATTCAATATAAACTTTTAAGTGGTACTTTTATTTTACTTAAGCAATTTAAGTAGGAATATTTCAATTACAATTCAGGCCGTAAGCA
Associated Phenotype:
Not determined