ZMP

zgc:194937

Ensembl ID:

ENSDARG00000073699

ZFIN ID:

ZDB-GENE-080721-25

Description:

hypothetical protein LOC100170785 [Source:RefSeq peptide;Acc:NP_001124096]

Human Orthologue:

COL9A1

Human Description:

collagen, type IX, alpha 1 [Source:HGNC Symbol;Acc:2217]

Mouse Orthologue:

Col9a1

Mouse Description:

collagen, type IX, alpha 1 Gene [Source:MGI Symbol;Acc:MGI:88465]

Alleles

There are 2 alleles of this gene:

Allele Name	Consequence	Status	Availability
sa15187	Nonsense	Available for shipment	Available now
sa27738	Essential Splice Site	Mutation detected in F1 DNA	Not yet available

Mutation Details

Allele Name:

sa15187

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC
Order Allele From EZRC

Mutation:

T > A

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000113311	Nonsense	130	687	8	32

Genomic Location (Zv9):

Chromosome 11 (position 11418956)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	11	11313959
GRCz11	11	11297580

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

CTTGAATTGTWWTCTTTTCTGTCNTGAAGGGTGCTGATGGAGATGATGGTT[T/A]ACCTGGTGAGATGGGAAAAGTTGGACCTCCAGTATGTGATGTCATTCCAT

Long Flanking Sequence:

AAGCAGGAACAAAAATTAATAAAGAAGTCAATGGTTACAGCTTTTCAATATTCTTACAAATATATACTTGTGTGTTGAACAGAAGAAGGGAACTCATAAAAGTTTTGAACCACTTGAGTGTGAGTTAATGAGAATAAATTTTTTGAGTGAACTCTCCTTTTAATATGTTAATATTTTCTATTCCATTAGTTTGTTACTATGTAAAGATGTACATTTGAAGAGAGACTTCCTTTTATTGTATGGTTGTAAATGCTTTAAACAGTTGCAAGCAGTAAGTTATTGGATCAAGATCAGGTTTATGACCTACTTGCTTATTTCTTATAACTGCAACTGTGTTACTTTTTTAACAGGGTGTTGGAGAGGATGGTGAAGCTGTGAGTGCACAGTCCTACATTCGATCTTTATTTGTTTTTAATAAGGCCTTTTGTTGTCTTATTTCTGATATCAATTCTTGAATTGTTTTCTTTTCTGTCTGAAGGGTGCTGATGGAGATGATGGTT[T/A]ACCTGGTGAGATGGGAAAAGTTGGACCTCCAGTATGTGATGTCATTCCATTATGCAATTCAAACAATAATAATCAAATGAAATATAATAAAATAAAAATGGTTTCTGGTTCTGTTTTAAAGGGAAGCCGTGGAGTGAGAGGTCCTGTTGGTGATCAAGGACTGCCTGGACCCAGAGTAAATATTTTTTAACTTTTATGTGCATTCACTGATGATGAAAAAAGAGTGTTCAATTATATTTCTTCTATTCTTAGGGCCCTCCTGGAGTCTGGGATGGTAAGGAGCTGGTATGTATTTTTGTATATCATACCTGGTTACCTTTTGCTCTAAATCTGGCATTCACTTCTCAGCTTACATGCAATCAAAAACTTAGCAAAATGATATAAATCACAACACATATTTAAAATGTAAATCTGTTTGAGCTGAGTGTGTACAATGTTAATTTTCATAATTTTACTTCTCAAAAACAACAACAACAACAACAAACACTTGTTCAGACAGT

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa27738

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

A > T

Consequence:

Essential Splice Site

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000113311	Essential Splice Site	384	687	23	32

Genomic Location (Zv9):

Chromosome 11 (position 11410807)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	11	11305810
GRCz11	11	11289431

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

ATGTGTAGAAATGTATCTCTTCTATAATCTTTTTTCTATTTTTTTTTTCC[A/T]GGGTGAAAGAGGAGCAAGAGGTCCTGATGGGCCTGCAGGCCTTCCAGGTG

Long Flanking Sequence:

TTGAGCAGACAAAACATGAAAGGTTTTGCATTCTCATTGTCTGCAATGAAATACAAGTCAAAGTAAACTTGGAAAGCACTACTTTCTTTTTTATTTGTATTTTCCATACTGTCCTAAGTTTTTCAGATTTGGGGTTATATATAACTCTTAATAAAAAATGTATATATTCATGTATAAATTATTAACTTTTGTAAATGTGAATCTAATCTGTTTGTATTTGCTTCAGGGAAGTACTGGTGATCCAGGTGTAGCAGGTCCAATTGGAAATAATGGAAAGACAGTGAGTCACAATTATTTATGTGTTCACTGGAACCTACAGGAGCATGTGGATGAAGAAACATTTATTCTCATCATTTGTTTTCAGGGTGAACGTGGTGAGCAGGGGGAGGTGGGACCAGTTGGACCAAGAGGTGGGCCAGTGAGTATAATTCCGCTAATTCACGTAGCCTCATGTGTAGAAATGTATCTCTTCTATAATCTTTTTTCTATTTTTTTTTTCC[A/T]GGGTGAAAGAGGAGCAAGAGGTCCTGATGGGCCTGCAGGCCTTCCAGGTGCAAGGGTGAGTTATTTATTAAACAATTCATTATACACTGTACAAAATGCTATAGGACACCTTTAGAAAATAACAACACTCTTAGGAAAAGCTTCATGGGGACTGAGATCAGCCTAGAGCTGGAAAAAGAAAAACAATGTACAGAGAAAGTTGAAGGACGGATAAAAGAGAAAGAGAAAACATTGACTAAAAGATTTGATTAGATTTATTTATTTTCCAACAGAAATATCATACATAAAATATCATTAACAAAAAAAAAAACATTTCAACATGGTCGAAAATGGAGTAAAATGAAGCTTATTATTTTTCCGCCATATTACCACATCCATTATTCGTCTGTTAATTAAACTTATTTCTTCTTTTACTTATCTCTTCTTTTTACATGAGACATATTTTATCCTTTTTGTAACTTTGACAAATTATATGTTTGATTCCATTTGTACATTTACAT

Associated Phenotype:

Not determined