ZMP
LPHN1 (1 of 4)
Ensembl ID:
Description:
latrophilin 1 [Source:HGNC Symbol;Acc:20973]
Human Orthologue:
LPHN1
Human Description:
latrophilin 1 [Source:HGNC Symbol;Acc:20973]
Mouse Orthologue:
Lphn1
Mouse Description:
latrophilin 1 Gene [Source:MGI Symbol;Acc:MGI:1929461]
Alleles
There are 8 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa45156 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
| sa40154 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
| sa20133 | Nonsense | Available for shipment | Available now |
| sa40153 | Nonsense | Mutation detected in F1 DNA | Not yet available |
| sa26145 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
| sa33299 | Nonsense | Mutation detected in F1 DNA | Not yet available |
| sa33298 | Nonsense | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa45156
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000124480 | Essential Splice Site | 11 | 1474 | 2 | 30 |
Genomic Location (Zv9):
Chromosome 3 (position 48834061)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 3 | 50834954 |
| GRCz11 | 3 | 47646454 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGTGATTAGGACACATGAGAGTTGCTTTTCTATTCTGGAGGCTTGCGTTA[G/A]GTTGGTGGATGGCAGCCGGAGAAGAGCTGTGTGAAAGAGTGGGAGGATGT
Long Flanking Sequence:
TCAGGAGTACCGAGCGCTTCATTGATCAGTTTTTTTCCCTGTTCATGGGACTCTGTGGGTCAGATCCACCCCCTCATCTTTCAGCACAATGGACAGCTCCACAGGTCCCCCCTCTCTCTATTTGTCAGCACTGCGGAGAGCTCCATTGCCTTGTTTTTGTCCTTCCGTGAGTGGAGGCGGCTGGCGGCCATTTTACGTGGCTGGATCTTTAAACTCTTTGAAAGCTCTTGTTCTGATAAAGTATGCCACTCTGTGCCACTCTCGGGGCCTCTCAGCCAGGCACAATGATTAACCCTACGGCACCTACAGCCCTCTCAACGTGTCTCTCTCTCGCGCTCTCTTAAATTGAGTGTAAATGGCAGATGCCACATGTGGGCAGAAGGGGTCACCGGCAGGTCTGGGGTCAGTCCTCTCTTCTTGTTGCTGGTTGCGCTCAGGTGTTTTAGTTATTGTGATTAGGACACATGAGAGTTGCTTTTCTATTCTGGAGGCTTGCGTTA[G/A]GTTGGTGGATGGCAGCCGGAGAAGAGCTGTGTGAAAGAGTGGGAGGATGTTAACGGAGTGTGTGTGGAACTTTAACAGTTTGTTTCAGCGAGAGGGTAAATAGTTTGCTCCTCGAGACTGGAAAGTCTGGAAATATGATCACTGGCTGTGAAACACCCTTCATTTCCTGATTCTTTTGTTTGAGTTATAAAGGTTTTCTGTAATAAACATCTCACTATGCTGTAATGCTAAGCTATATTTTTAATTAGCAGGTTACTTTGTGACCTGCTAATTATGTTAACTATGCATGACAATGTTGGGTGCATTTTAAAATCTACACAAAGTCAAAGTTCGTCGGCTTTATTTAATTTACACACAAGTGGTGTTAATATGTCCATTTTTAATTGTTTAAGCCTCATTGAATGATTTAATGGTTTATTGCTGTACTTTATTTTACAGTCCTGTTTTGTGTATACATAATATGTACATATCATAGTCAATATATAAATGTGTTAAATCTA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa40154
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000124480 | Essential Splice Site | 96 | 1474 | 3 | 30 |
Genomic Location (Zv9):
Chromosome 3 (position 48832653)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 3 | 50833546 |
| GRCz11 | 3 | 47645046 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AGAATGTACAGTGCTACCTACCAGACGCCTTCAAGATCATGTCACAGAGG[T/C]ACACCAGAGCACTGTTCTGCTGCAGGATCTATTTTTGTGGTGGTTTTTAG
Long Flanking Sequence:
GAAACGCCAATACTTGTGTTCAATACTTATTTTTCACACTGTACATACATACATACATACATACATACATACATACATAAAGTGCAAGCCACTCATTTAATATGTAAAAAATCTTTTTTTTTAGGAATTCTACTTTGAAATAAAGATTGAATTTAATTTTGTTTTGCTCAGAAAAACGGCATGCAAAATGACTGTGTGTGAAGAATTTTCTTCTAAATTCTAAGCAGAATGTGAAAGCATGTATTAAATGTCTTTCTTTCTTTCTTTCTTTCTTTCTTCATGTAGCATTAAGTCGGTCTGCAATGCCATTTGGTTTGATGCGGAGGGAGCTGGCATGCGAGGGTTACCCCATCGAGCTGCGCTGTCCCGGCAGTGATGTCATCATGATCGAAACAGCCAACTACGGCCGCACAGATGACAAGATCTGTGACGCCGACCCCTTTCAGATGGAGAATGTACAGTGCTACCTACCAGACGCCTTCAAGATCATGTCACAGAGG[T/C]ACACCAGAGCACTGTTCTGCTGCAGGATCTATTTTTGTGGTGGTTTTTAGTCCAGGGGGTTCAATTCTTATGCTGTCATGCTGAGAGCGGCTCCAATCAGCTTAAGCACACTTCTAGTCAGTCTAAAGGCTTTAATCCACTGGTTCAGGTTAGGTTACTATAATTAGGGTTGGAGCTAAACTCAAATGGTAATGTGTAACAAATTTAACATTTTATTATTATTTATTTTTATTTTATTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTTGCATTTGTTAACGTGTTATAGCAGACACCTTAACACCTTCTAAAGGGAGGCTTATTTGTTTTTGTTTTTTTTATTTAATTTTCTTTTATTTTATTTTTTGTTTTCTTTTATTTTCTTTTATTTTATTTCATTTCATTTTATTATATTTACACTAATATATATTAGACTAATTTATATTACACTATTCTCTGCATCTACCAAGTCAGTGAAGGAC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa20133
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000124480 | Nonsense | 144 | 1474 | 5 | 30 |
Genomic Location (Zv9):
Chromosome 3 (position 48760990)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 3 | 50761883 |
| GRCz11 | 3 | 47573377 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TCTCTCTCTCTCTTCCACATCTCCAGTCTTTGTATGTCCTGGGACTCTAT[T/A]AAGGGTGCAGGCAGCAAGTTTGCTGCAGGAGGCGGAGCATCAGTCGGGGG
Long Flanking Sequence:
ATCAACAGCCAACAACCTGTACCAACCTGGACTAACAACCATAAATGACTCGTCAATTTAGAAACAATGTACAATTAGCTGTTATCTGAAGCCGGTAATTTCCAGCAAGGACATTGAAGTGAGTCAGGGTTAAACCAAAATAATTTCCACCTGAAGCCAGGATTGTTTCATCTCCCCTCATAGCCTTTAGTCCAGTGTGCAGATACTTGACTAATGAACATTAACACTCTTTCATTAGAAGAACAGTCATTTATCTCATGTCCTCTCTTCCATTTCTCTCTCCCCCTCTTTCTTGCTGCCTTATTCTTTCATATTACTGTCCCCCATTGCCTTCTTTACCCTTCATTACTACAATTCTTCTATCACACCGTCCTTCTATGCGTTCTTGCTGTCCCCTCCTTGTTATTTCATATTTCCCTCTCTTTCTCTTCCTCCTACTCTCTCTCTCTCTCTCTCTCTCTCTTCCACATCTCCAGTCTTTGTATGTCCTGGGACTCTAT[T/A]AAGGGTGCAGGCAGCAAGTTTGCTGCAGGAGGCGGAGCATCAGTCGGGGGCATGGTGTAAGGATCCCCTGCAGTCTGGTGACCGTCTTTACGTCATGCCCTGGACTCCGTACCGCACAGATATGCTGTACGAGTATGCTTCATGGGAAGACTTCAAGCAGAATCGAGCCACAACCACCTACAAGTGAGTGACGATCTTAGTGTTAGGAACCAATGACCATCTCTGTGGATAACAATAGTCATTTTAAAATGAGTAATTAGTTACTTATTATAAGAGGTTTCTAACTTACTTATCCTAGGCAGTATCCCTAGACAGAAATATTAGAGTGTAGAATCCTCATTTAGTCTCAGATAATAAGGTTTCTGAAATGTAGCAGAAATAAAAAGTTAATGAGAGCTACACTTACTGCAAGTCAGCTCAAATATCACACTCTTTTTCCACAGGCTGCCAAATCGTGTGGATGGAACAGGCTTTGTCGTGTATGATGGTGCTGTATTTTA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa40153
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000124480 | Nonsense | 197 | 1474 | 5 | 30 |
Genomic Location (Zv9):
Chromosome 3 (position 48760832)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 3 | 50761725 |
| GRCz11 | 3 | 47573219 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CGTACCGCACAGATATGCTGTACGAGTATGCTTCATGGGAAGACTTCAAG[C/T]AGAATCGAGCCACAACCACCTACAAGTGAGTGACGATCTTAGTGTTAGGA
Long Flanking Sequence:
AGGATTGTTTCATCTCCCCTCATAGCCTTTAGTCCAGTGTGCAGATACTTGACTAATGAACATTAACACTCTTTCATTAGAAGAACAGTCATTTATCTCATGTCCTCTCTTCCATTTCTCTCTCCCCCTCTTTCTTGCTGCCTTATTCTTTCATATTACTGTCCCCCATTGCCTTCTTTACCCTTCATTACTACAATTCTTCTATCACACCGTCCTTCTATGCGTTCTTGCTGTCCCCTCCTTGTTATTTCATATTTCCCTCTCTTTCTCTTCCTCCTACTCTCTCTCTCTCTCTCTCTCTCTCTTCCACATCTCCAGTCTTTGTATGTCCTGGGACTCTATTAAGGGTGCAGGCAGCAAGTTTGCTGCAGGAGGCGGAGCATCAGTCGGGGGCATGGTGTAAGGATCCCCTGCAGTCTGGTGACCGTCTTTACGTCATGCCCTGGACTCCGTACCGCACAGATATGCTGTACGAGTATGCTTCATGGGAAGACTTCAAG[C/T]AGAATCGAGCCACAACCACCTACAAGTGAGTGACGATCTTAGTGTTAGGAACCAATGACCATCTCTGTGGATAACAATAGTCATTTTAAAATGAGTAATTAGTTACTTATTATAAGAGGTTTCTAACTTACTTATCCTAGGCAGTATCCCTAGACAGAAATATTAGAGTGTAGAATCCTCATTTAGTCTCAGATAATAAGGTTTCTGAAATGTAGCAGAAATAAAAAGTTAATGAGAGCTACACTTACTGCAAGTCAGCTCAAATATCACACTCTTTTTCCACAGGCTGCCAAATCGTGTGGATGGAACAGGCTTTGTCGTGTATGATGGTGCTGTATTTTACAACAAGGAACGCACACGCAACATCGTTAAATATGACTTGCGGACTCGTATCAAGAGTGGAGAAGCCATTGTCAACAATGCAAACTACCATGACACCTCACCTTACCGCTGGGGTGGCAAGTCTGATATTGACCTTGCAGTTGATGAAAATGGTCTGT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa26145
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > T
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000124480 | Essential Splice Site | 205 | 1474 | 5 | 30 |
Genomic Location (Zv9):
Chromosome 3 (position 48760806)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 3 | 50761699 |
| GRCz11 | 3 | 47573193 |
KASP Assay ID:
2259-4070.1 (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TATGCTTCATGGGAAGACTTCAAGCAGAATCGAGCCACAACCACCTACAA[G/T]TGAGTGACGATCTTAGTGTTAGGAACCAATGACCATCTCTGTGGATAACA
Long Flanking Sequence:
CTTTAGTCCAGTGTGCAGATACTTGACTAATGAACATTAACACTCTTTCATTAGAAGAACAGTCATTTATCTCATGTCCTCTCTTCCATTTCTCTCTCCCCCTCTTTCTTGCTGCCTTATTCTTTCATATTACTGTCCCCCATTGCCTTCTTTACCCTTCATTACTACAATTCTTCTATCACACCGTCCTTCTATGCGTTCTTGCTGTCCCCTCCTTGTTATTTCATATTTCCCTCTCTTTCTCTTCCTCCTACTCTCTCTCTCTCTCTCTCTCTCTCTTCCACATCTCCAGTCTTTGTATGTCCTGGGACTCTATTAAGGGTGCAGGCAGCAAGTTTGCTGCAGGAGGCGGAGCATCAGTCGGGGGCATGGTGTAAGGATCCCCTGCAGTCTGGTGACCGTCTTTACGTCATGCCCTGGACTCCGTACCGCACAGATATGCTGTACGAGTATGCTTCATGGGAAGACTTCAAGCAGAATCGAGCCACAACCACCTACAA[G/T]TGAGTGACGATCTTAGTGTTAGGAACCAATGACCATCTCTGTGGATAACAATAGTCATTTTAAAATGAGTAATTAGTTACTTATTATAAGAGGTTTCTAACTTACTTATCCTAGGCAGTATCCCTAGACAGAAATATTAGAGTGTAGAATCCTCATTTAGTCTCAGATAATAAGGTTTCTGAAATGTAGCAGAAATAAAAAGTTAATGAGAGCTACACTTACTGCAAGTCAGCTCAAATATCACACTCTTTTTCCACAGGCTGCCAAATCGTGTGGATGGAACAGGCTTTGTCGTGTATGATGGTGCTGTATTTTACAACAAGGAACGCACACGCAACATCGTTAAATATGACTTGCGGACTCGTATCAAGAGTGGAGAAGCCATTGTCAACAATGCAAACTACCATGACACCTCACCTTACCGCTGGGGTGGCAAGTCTGATATTGACCTTGCAGTTGATGAAAATGGTCTGTGGGTAATCTACGCTACTGAGGCCAAT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa33299
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000124480 | Nonsense | 376 | 1474 | 7 | 30 |
Genomic Location (Zv9):
Chromosome 3 (position 48759868)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 3 | 50760761 |
| GRCz11 | 3 | 47572255 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TACCCTTCCCCAATCCATACCAGTATGTGTCTTCTGTGGACTACAACCCA[C/T]GAGACAATCAACTTTATGTCTGGAATAACTACAATGTACTGCGCTACCCC
Long Flanking Sequence:
TCTGATATTGACCTTGCAGTTGATGAAAATGGTCTGTGGGTAATCTACGCTACTGAGGCCAATAATGGCCGACTGGTGGTCAGCCAGGTCAGTTTTACTAAATAGTGCAAGTTACAGAATTTCAACTGAGATCCGATTTAAATGTTGGTTACAATCATCATTAAGAGTCATAGTCTTTCCAAAACTGTGGTGTATTCTAATTATTCTGTTATATCAAATAAGCAGAATAGTAACACAAACCTTTTCTCTTTCAGGTTAACCCCTACACTCTGCGCTTTGAGGGAACATGGGAGACCAGCTTCGACAAACGACTGGCATCCAACGCTTTCATGGCATGTGGTGTTCTCTACGCTGTGCGCTCTGTTTATCAGGATGATGACAGCGAAGCAGGTGGAGATCTGGTGCTGTATGCATACAACACCAATCGAGCAAGGGAGGAGCCTGTCCACATACCCTTCCCCAATCCATACCAGTATGTGTCTTCTGTGGACTACAACCCA[C/T]GAGACAATCAACTTTATGTCTGGAATAACTACAATGTACTGCGCTACCCCCTAGAGTTTGGCCCGCCAGATCCCACTGCTGGTAAGTGGTAGGTTAGAGTGAGATCAGTGGGAGGCAAAGGCTAACAGACAGTTTGATCTGTTAAGTGTCTACGTTCTGTTAGTGTTCCCTTCTGTGACTTCAATACATTAACTTCATGGTTTAATTAGCAGTGGTCATTAGCATTTTGTCAGATCAGAAAAAAAAGATTTCTAATCAATTATTAATTCCCATCTTCTTGCCATGAACATTATACGTATGTCTCTTTCTCGCTCTCGCTCCTACTGCATTTTGTTCTATCTATTCTCTCAAGGAATGTGGGAACATATAGTCATACATTAAAGTCTGGCAGATGCTCCTGCTGCTTTAGTTATCTCTCTACCAACTTTCTCATATTCCTTTTGCTAGAGACATCAAACATTTAGGTTTTCCTTTCTTTTATGTTGTCTCTTTTTTATCCT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa33298
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000124480 | Nonsense | 561 | 1474 | 10 | 30 |
Genomic Location (Zv9):
Chromosome 3 (position 48753139)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 3 | 50754032 |
| GRCz11 | 3 | 47563619 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TCCGAGCCCTTATTTTCTGTCCTGCCGCTGTACCGCTACCTCAGCTATTA[T/A]CATTCCGGCCTCAGCTCACATTACAGCACACAGGTCATTCCTCTGACATG
Long Flanking Sequence:
TAAACATAAATGGGCTTTATTATTGATAGCAATAGCCATACTTGAAGTCAACTGTCCGTTCAAATAATCGATGGACTTTTTTTTTTTTTTTCCAAATTTAAAGAGTCAATTCTTTTGAAGCCCTGTTCAAATTAATCTTCAATTCCTGGCAAGCTAATTTGCTACAATATGTTTCGCTCTGTCTTCATGTTTCAGATGAGATTACGTCAAACATCGTATGTAAAATGCACATTACCAAGCATTCATAGGACCGTTAAGTGTGTCGTTATTTATGCTGACTGTAAATATTCAGGCATCTGGTCTTCTGTTTCCAGGCATCGCCTCTTTCCAGTGTCTGTCGTCTCCTGTGCTGTGGAACCCGCGCGGTCCTGATCTTAGTAACTGCACCTCGCCGTGGGTCAACCAAGTGGCCCAGAAGGTGAGATCACTAAAAAAAAAGTTAACACTTGCTCCGAGCCCTTATTTTCTGTCCTGCCGCTGTACCGCTACCTCAGCTATTA[T/A]CATTCCGGCCTCAGCTCACATTACAGCACACAGGTCATTCCTCTGACATGATTTAGAACAAAATCTCTCTATTCAATCTATTTCTATAAAAGAGTTTAAAAGCATCTCGGGTCAAAGTCACACTGCACTTACACATCAAGGACTGCTGGTTTCGCTTTTCATAAACACTACAGTACAGTAGTGCAAAAGTTGCAGTTTTGTTTGTTTGTTTAAAAGGCAAAGTTCAACCAAAATTTATTCTTTACTCATTATTTACTCATCCTCAAGTGTTTCCAAATCTTTAAGAGCATTTTTTTTTTTTTCTGCACAGAAGAAGATATTTTAAAGAAAGCCGAAAACCTGTTACTGTTGACTTCCATATAGTAGGAAAAAAACAAACACTGTGGAAGTCAATAGTTACAAGCACATTGGTTCATTCTGAAAACGTATCCAAATATATAATTCTGGAGATTGCGAATTACAGGTATTTAGCCCGAGGAACGTATGGCTGCATTTCCTTT
Associated Phenotype:
Not determined