ZMP
zgc:103668
Ensembl ID:
ZFIN ID:
Description:
suppressor of G2 allele of SKP1 homolog [Source:RefSeq peptide;Acc:NP_001007362]
Human Orthologue:
SUGT1
Human Description:
SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) [Source:HGNC Symbol;Acc:16987]
Mouse Orthologue:
Sugt1
Mouse Description:
SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) Gene [Source:MGI Symbol;Acc:MGI:1915205]
Alleles
There are 2 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa25589 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
| sa1200 | Essential Splice Site | F2 line generated | Not yet available |
Mutation Details
Allele Name:
sa25589
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000026147 | Essential Splice Site | 117 | 322 | 7 | 13 |
| ENSDART00000115319 | Essential Splice Site | 117 | 322 | 7 | 13 |
| ENSDART00000135432 | Essential Splice Site | 43 | 248 | 3 | 9 |
Genomic Location (Zv9):
Chromosome 1 (position 26976805)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 1 | 27301224 |
| GRCz11 | 1 | 27994938 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GGGATTGTGTGTATGTGTATGTCTAATACAATAGTTTTCTGATTTTTTTA[G/A]CACACATTCCAAACAAAACTTCAGATTTGGTAAGTGTCTGTTTACTGTCT
Long Flanking Sequence:
ACTATAATGCAGGTCATTTTAAGCTATTCAATTAGTTATTAGATCTGTTATTATATTTTAATTATTTATTTAAAATTATTATAATTCTATTATTTTGAATAAACTATTTACTATGTTATATTATAATTAATAAACGCATATAAACATTTGTTTCTGTTTATACTAAAAAGATACCATGCATGAGAATACTGCAGTTTAACTGTATCTGAAGCAAATATTATTGGCACTTAAATGTATAACATTCATTCATTGGTTCCTTTAATTGATGCTGTTGAATTTAAAAGATGTCATTGCAAAATTAGTTTATATTAATTATATATTAATTACATTTTGATATGTATTTGTCATACAAAGGTTCTGTTGAAGAATTTCAAACATGGATGCAGCACTGTGAAACTGAAATGGCGAGTATGTATAACGTAAATTTTTTTTTAATTCAATTTCAGTTCGGGGATTGTGTGTATGTGTATGTCTAATACAATAGTTTTCTGATTTTTTTA[G/A]CACACATTCCAAACAAAACTTCAGATTTGGTAAGTGTCTGTTTACTGTCTTTATCTGTATGTAACTGGAAAAGAAATATACAGTATTATGCTAGTGCTTTAATTTTATTGCCTGGTTTTTATCATCTTAATTTAAAGAAACACAACGAACCCTTAATTGAGAAAACTGAGTAATTTGATACATGAGATCAGTTGTTTTTGTTAAACGATGTGCTGTTGATGAATTTTAATTGTTAGAATATTTTTTTAAGTATAGAAAAGTGGTATTTATAAAATGTGGTAAACTTGATCAGTTTTTTTTTTTTGCCATGACCTAGCCAAAGAAGCTGAAATGGCAATAAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAACAATGATTTGTGCTTTTTTTATTATTTTCCCTCTGTTTCTGCTGAAATGCACTTACAACTGACTGTTTAAACAACAGCAAACTACAACCCATGTCAAGTAAGTATGGTGGTGTAATAATTT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa1200
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > T
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000026147 | Essential Splice Site | 133 | 322 | 8 | 13 |
| ENSDART00000115319 | Essential Splice Site | 133 | 322 | 8 | 13 |
| ENSDART00000135432 | Essential Splice Site | 59 | 248 | 4 | 9 |
Genomic Location (Zv9):
Chromosome 1 (position 26977282)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 1 | 27301701 |
| GRCz11 | 1 | 27995415 |
KASP Assay ID:
554-1109.1 (used for ordering genotyping assays)
KASP Sequence:
TGCACTTACAACTGACTGTTTAAACAACAGCAAACTACAACCCATGTCAA[G/T]TAAGTATGGTGGTGTAATAATTTTATTTTAAATTCTTTGTGTTTAATAGT
Long Flanking Sequence:
ACAATAGTTTTCTGATTTTTTTAGCACACATTCCAAACAAAACTTCAGATTTGGTAAGTGTCTGTTTACTGTCTTTATCTGTATGTAACTGGAAAAGAAATATACAGTATTATGCTAGTGCTTTAATTTTATTGCCTGGTTTTTATCATCTTAATTTAAAGAAACACAACGAACCCTTAATTGAGAAAACTGAGTAATTTGATACATGAGATCAGTTGTTTTTGTTAAACGATGTGCTGTTGATGAATTTTAATTGTTAGAATATTTTTTTAAGTATAGAAAAGTGGTATTTATAAAATGTGGTAAACTTGATCAGTTTTTTTTTTTTGCCATGACCTAGCCAAAGAAGCTGAAATGGCAATAAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAACAATGATTTGTGCTTTTTTTATTATTTTCCCTCTGTTTCTGCTGAAATGCACTTACAACTGACTGTTTAAACAACAGCAAACTACAACCCATGTCAA[G/T]TAAGTATGGTGGTGTAATAATTTTATTTTAAATTCTTTGTGTTTAATAGTACAAAAATAGAATAAAATTGCATCACATTTAATGAATTTCTGCTTCATTCAGACATGATTGGTACCAGACAGAGTCTCAAGTTGCAGTTACCATCATGGTAAAAAATGCCAAGAAGGAGGGTGTGATTGTCAGCTTTGGCGAAAGGGAGGTAATGTTTCTCTCCTTTTTCATGTCATCAATGATTATGCGCTGTACATAGTTAAGGTTGAGAGGTGGACATCATGGTATATAAATAAAGCTTTTTAACTAATATAATAAGCAGCCATGTGGCTGGTAGGGTATACATATACGGTGACATATGCATAAATTGACATAAACATACAAGTGCACATTCCAGGTAAATGAAATGTCTGTAAAAGGCAATTGTATAAGAAAACTAACCTGTCTCTTCTTGGTTTGGTAGCTTCGAAAAATTTAATATAAAGCAAAAATATGAGTTTATATAAAAT
Associated Phenotype:
Normal
| Stage | Entity | Quality | Tag |
|---|---|---|---|
| Larval:Day 5 ZFS:0000037 |
whole organism ZFA:0001094 |
quality PATO:0000001 |
normal PATO:0000461 |