ZMP
si:dkey-27p1.2
Ensembl ID:
ZFIN ID:
Human Orthologue:
ROD1
Human Description:
ROD1 regulator of differentiation 1 (S. pombe) [Source:HGNC Symbol;Acc:10253]
Mouse Orthologue:
Rod1
Mouse Description:
ROD1 regulator of differentiation 1 (S. pombe) Gene [Source:MGI Symbol;Acc:MGI:1923334]
Alleles
There are 3 alleles of this gene:
Allele Name | Consequence | Status | Availability |
---|---|---|---|
sa5581 | Essential Splice Site | F2 line generated | Not yet available |
sa2556 | Essential Splice Site | F2 line generated | Not yet available |
Mutation Details
Allele Name:
sa5581
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > G
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000040308 | Essential Splice Site | 208 | 522 | 5 | 13 |
ENSDART00000146727 | Essential Splice Site | 208 | 522 | 6 | 14 |
ENSDART00000040308 | Essential Splice Site | 208 | 522 | 5 | 13 |
ENSDART00000146727 | Essential Splice Site | 208 | 522 | 6 | 14 |
Genomic Location (Zv9):
Chromosome 10 (position 11140238)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 10 | 11216104 |
GRCz11 | 10 | 11174342 |
KASP Assay ID:
554-3066.1 (used for ordering genotyping assays)
KASP Sequence:
GGCCTTGCTACAATATGCAGATCCAATGAACGCACATCATGCCAAAGTGG[T/G]CAGTATCAACAAACAATCCATAACCACAAGATGCTCCTTTTAATAGCAGA
Long Flanking Sequence:
CTGAAATCAAGAAGCCTTTTTATATAGAAAAGTTAAAAATATCAAAAAATAAAAATAATCTGTTAAAGGGGTTTGTAAAATAATTGTATTATTTACAAGATTAATTTACTCACCTCATTGGCAGATTATTTTGCTTTTATTTTCAGCAATATTTTTTACTTGTCCAGAAAATGCTTCTTGATTTAAGAATTTTGGATATTTGGAATAAGACAAACCTAAGAAAAACCATTTTTTAAGTTTTCTGACTGCTTATCAACTAGCTAAACTACCTCAAAATCATTTTGGAGACTAACTAATCCTGCTCAACCAGATAAGATGAGATTAAATATTATTTTAAAATTGTATATTTTTATTTACAAAGGCTGTTCTTGTCTTCTCCTTAATTTAGATCTTCTCCAAATTTGGAACGGTCCTGAAGATCATCACCTTCACCAAGAACAACCAGTTTCAGGCCTTGCTACAATATGCAGATCCAATGAACGCACATCATGCCAAAGTGG[T/G]CAGTATCAACAAACAATCCATAACCACAAGATGCTCCTTTTAATAGCAGACTGTTTTAGCATTTAATTTGTAAAACAAACACATTTTTACAAACTAGCACTTTTTCCATTAAGTTCTAGTACTTCATTAGCAGCTAGTGCCTGTTATTTAGTACCTTTTAAATAAAAGGTATTTAGCGCATAAATAAAAGGACGTAGAGCAGAACTGCAAGTGCAAAGATGACGCGTCGGTTTCTCACTATAATTCATAGCAGAGTTTTCTTATCCTATGAGAAGAGCCGGCTTCTTAATTACTTATGGCTGCACATGCTGTCCAAAAGCAAGACACAGACCTGCCAGTGCCACTTCCAAGCTGTGAGACCCTATGTTGATGACTGGGTGAGACCGCGTCCACGGACCCACGGCACAGAGTACTTAGCCATTTATGAAGGATTGTATGTGTTTGTTTCCATGATCCACGAGCCTTGTTGCATGTTTTTCCCCACGATCCTGTCAGGGCCG
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa2556
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > G
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000040308 | Essential Splice Site | 208 | 522 | 5 | 13 |
ENSDART00000146727 | Essential Splice Site | 208 | 522 | 6 | 14 |
ENSDART00000040308 | Essential Splice Site | 208 | 522 | 5 | 13 |
ENSDART00000146727 | Essential Splice Site | 208 | 522 | 6 | 14 |
Genomic Location (Zv9):
Chromosome 10 (position 11140238)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 10 | 11216104 |
GRCz11 | 10 | 11174342 |
KASP Assay ID:
554-3066.1 (used for ordering genotyping assays)
KASP Sequence:
GGCCTTGCTACAATATGCAGATCCAATGAACGCACATCATGCCAAAGTGG[T/G]CAGTATCAACAAACAATCCATAACCACAAGATGCTCCTTTTAATAGCAGA
Long Flanking Sequence:
CTGAAATCAAGAAGCCTTTTTATATAGAAAAGTTAAAAATATCAAAAAATAAAAATAATCTGTTAAAGGGGTTTGTAAAATAATTGTATTATTTACAAGATTAATTTACTCACCTCATTGGCAGATTATTTTGCTTTTATTTTCAGCAATATTTTTTACTTGTCCAGAAAATGCTTCTTGATTTAAGAATTTTGGATATTTGGAATAAGACAAACCTAAGAAAAACCATTTTTTAAGTTTTCTGACTGCTTATCAACTAGCTAAACTACCTCAAAATCATTTTGGAGACTAACTAATCCTGCTCAACCAGATAAGATGAGATTAAATATTATTTTAAAATTGTATATTTTTATTTACAAAGGCTGTTCTTGTCTTCTCCTTAATTTAGATCTTCTCCAAATTTGGAACGGTCCTGAAGATCATCACCTTCACCAAGAACAACCAGTTTCAGGCCTTGCTACAATATGCAGATCCAATGAACGCACATCATGCCAAAGTGG[T/G]CAGTATCAACAAACAATCCATAACCACAAGATGCTCCTTTTAATAGCAGACTGTTTTAGCATTTAATTTGTAAAACAAACACATTTTTACAAACTAGCACTTTTTCCATTAAGTTCTAGTACTTCATTAGCAGCTAGTGCCTGTTATTTAGTACCTTTTAAATAAAAGGTATTTAGCGCATAAATAAAAGGACGTAGAGCAGAACTGCAAGTGCAAAGATGACGCGTCGGTTTCTCACTATAATTCATAGCAGAGTTTTCTTATCCTATGAGAAGAGCCGGCTTCTTAATTACTTATGGCTGCACATGCTGTCCAAAAGCAAGACACAGACCTGCCAGTGCCACTTCCAAGCTGTGAGACCCTATGTTGATGACTGGGTGAGACCGCGTCCACGGACCCACGGCACAGAGTACTTAGCCATTTATGAAGGATTGTATGTGTTTGTTTCCATGATCCACGAGCCTTGTTGCATGTTTTTCCCCACGATCCTGTCAGGGCCG
Associated Phenotype:
Not determined