ZMP
plod1a
Ensembl ID:
ZFIN ID:
Description:
procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 [Source:RefSeq peptide;Acc:NP_001071210]
Human Orthologue:
PLOD1
Human Description:
procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 1 [Source:HGNC Symbol;Acc:9081]
Mouse Orthologue:
Plod1
Mouse Description:
procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 Gene [Source:MGI Symbol;Acc:MGI:99907]
Alleles
There are 6 alleles of this gene:
Allele Name | Consequence | Status | Availability |
---|---|---|---|
sa21385 | Essential Splice Site | Available for shipment | Available now |
sa31681 | Nonsense | Available for shipment | Available now |
sa13867 | Essential Splice Site | Available for shipment | Available now |
sa14077 | Essential Splice Site | Available for shipment | Available now |
Mutation Details
Allele Name:
sa21385
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000083395 | Essential Splice Site | 251 | 730 | 8 | 19 |
ENSDART00000147159 | None | None | 50 | None | 4 |
The following transcripts of ENSDARG00000059746 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 8 (position 50034276)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 8 | 47886253 |
GRCz11 | 8 | 47875245 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CAACTGTCTTCAGTTCAACCTGATTTATTTTGTGCTCTTTTTTTTCTTCA[G/A]CTTCAGATAAACTACCTAGGGAACTACATCCCGAATCTGTGGACATTTGA
Long Flanking Sequence:
GGCTGCGTCCGAAACCGCATACTTCCATACTATATAGTATGCTAAAATCAGTATGCGAGCAGAGTAGTATGTCCGAATTCTTAAAATTCGAAAATCAGTATGCGAGAAGTACCCGGATGACTTACTACTTCCGGCGAGATTCTGGAGTGCGCATCTCGGATTCGGACGGTTTCGGTTTCGGACGCAGCCTATGAATAGTCAACTTTGTCTTCTTCTTTGTTACAAGCGGATGTCAGAAGCTTAAAGTAGTGCAGCACCATGTAACGTCAAGGAGTGGTTTTGCATACTCTTCTGCTCGACGCCAGTGAAAATTGCTTGGGTTTGAATCCTTGAAAAACGCTGACGATTAACGCAAGCGAAAAGCGTCCCGGTGTGTACGAGCCTTAAGAGAGGAGATGATGTTATTTTGTTATGTAAATGACCGTAATATTCAGGCAAGATCTTCTTTAACAACTGTCTTCAGTTCAACCTGATTTATTTTGTGCTCTTTTTTTTCTTCA[G/A]CTTCAGATAAACTACCTAGGGAACTACATCCCGAATCTGTGGACATTTGAGACTGGCTGCACAATGTGTAATCAGGATCGGCGGCTGCTTTCCGGACTGCAGGTCAGCCCTTTACACTCATTCATTGTTTTCATGGTTTCGATTTTACGCTTATCCTTGAGATATGGTTGTGTTTGTATGGCTGTATTAAATAATTGCATTCAAATCCACTTTTAGGGAGTCATGATTTATGTCAATGATGCATGTATACAGAGTACATGTGGTCATTAATTACAAATGTATTATTACAACTTATTAAATATATTTATATTATAGTCATTGTTGGTATAACTTAATCTAATGAGTTCACCTTGGCCACATTTTGGCAAAAATGAGAACAAAATAGTGGAAAATGGTCATGGTTTAATTAAAAAGGTAGCAATTTAATCAAACGTAGCAGCTTATTTTTAAGTTGATGGAAAATTTGTGAATACAATATGTCATTTTTTCTTCTGCATGTT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa31681
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000083395 | Nonsense | 536 | 730 | 15 | 19 |
ENSDART00000147159 | None | None | 50 | None | 4 |
The following transcripts of ENSDARG00000059746 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 8 (position 50043016)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 8 | 47894993 |
GRCz11 | 8 | 47883985 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGTATTTTTTGTCTTATACTTTTTTTTCTGTGAAACAGGAATGGGAGGAA[C/T]GATACATTCATCCAAATTATTCCAGAGTTTTAAAAGACGAGTTTATAGAA
Long Flanking Sequence:
ATGGAGGATGTGGTGGAACTGGAGATTCCCATCATGGATGTGCAGCCGACAAATTTAAAGCAACTGTGTGATGCTATCATGTCAATATGGAGCAAAAACTCTGAGGAATACTTCCAGTACTTTGTTGAATCTATACCAAGAAGGATTAAGAATTTCTGAAGACAAAAGTGTGTCCAACCTAGTACTTGTAAGGCATACCTAATAAAGTGGCCAGTGAGTGTATAATGCAATTTGACATTTTTGGATAAATATATTGAGATATGTTTTCTCATTCCCAGGGTGTCTTTATGTTTGTGACAAATATGGATACTTTCGGTCGAGTTTTATCGACCGACAATTACCAAACAAACCACTTGCACAATGATCTCTGGCAGATCTTTGAAAATCCTGTGGTAAGATTACATTTACAAATATTATACTGGAAATGCATCATTTATTGTTAGTTTACGGTGTATTTTTTGTCTTATACTTTTTTTTCTGTGAAACAGGAATGGGAGGAA[C/T]GATACATTCATCCAAATTATTCCAGAGTTTTAAAAGACGAGTTTATAGAAACAGTGAGTATTCACCCAAGCAATAAAATTACACAATCTATGAATTGACCCTATAAAAGTCACGTAAAATTGCTTTGAAGTGTGTATTTTGAATTCGATGTTTGACACAATCTCAACCGAAACACGAAAAGAGGGAGGGATATAGTGTAGCTCATCCCCTTTAAAAAACAGCCAATAGCGTTTTGCTTGATCTCCGCTCTGCCAGTGAGAATGGTTTGGTGCATTTGACATGAAGCACAGCTGCAGCCGGTGATCTACCTGATTAGCCGAGCGCAGGCGGGGGCGGAGTTGAAAACGAAGCCACCAGGTTGGACACTTCGGGGCTCAAAGTTGCTGCAGTCATGACTGATCACATGGCGTAATCACTTATTTATTTATGCATTTATTGCAATACCAACAAAAGATTCACAGGACAAATAAAACAGAATAAAGTCTTTACAAACTATAGTT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa13867
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000083395 | Essential Splice Site | 553 | 730 | None | 19 |
ENSDART00000147159 | None | None | 50 | None | 4 |
ENSDART00000083395 | Essential Splice Site | 553 | 730 | None | 19 |
ENSDART00000147159 | None | None | 50 | None | 4 |
The following transcripts of ENSDARG00000059746 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 8 (position 50043071)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 8 | 47895048 |
GRCz11 | 8 | 47884040 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CATTCATCCAAATTATTCCAGAGTTTTAAAAGACGAGTTWATAGAAACAG[T/C]GAGTATTCACCCAAGCAATAAAATTACACAATCTATGAATTGACCCTATA
Long Flanking Sequence:
TAAAGCAACTGTGTGATGCTATCATGTCAATATGGAGCAAAAACTCTGAGGAATACTTCCAGTACTTTGTTGAATCTATACCAAGAAGGATTAAGAATTTCTGAAGACAAAAGTGTGTCCAACCTAGTACTTGTAAGGCATACCTAATAAAGTGGCCAGTGAGTGTATAATGCAATTTGACATTTTTGGATAAATATATTGAGATATGTTTTCTCATTCCCAGGGTGTCTTTATGTTTGTGACAAATATGGATACTTTCGGTCGAGTTTTATCGACCGACAATTACCAAACAAACCACTTGCACAATGATCTCTGGCAGATCTTTGAAAATCCTGTGGTAAGATTACATTTACAAATATTATACTGGAAATGCATCATTTATTGTTAGTTTACGGTGTATTTTTTGTCTTATACTTTTTTTTCTGTGAAACAGGAATGGGAGGAACGATACATTCATCCAAATTATTCCAGAGTTTTAAAAGACGAGTTTATAGAAACAG[T/C]GAGTATTCACCCAAGCAATAAAATTACACAATCTATGAATTGACCCTATAAAAGTCACGTAAAATTGCTTTGAAGTGTGTATTTTGAATTCGATGTTTGACACAATCTCAACCGAAACACGAAAAGAGGGAGGGATATAGTGTAGCTCATCCCCTTTAAAAAACAGCCAATAGCGTTTTGCTTGATCTCCGCTCTGCCAGTGAGAATGGTTTGGTGCATTTGACATGAAGCACAGCTGCAGCCGGTGATCTACCTGATTAGCCGAGCGCAGGCGGGGGCGGAGTTGAAAACGAAGCCACCAGGTTGGACACTTCGGGGCTCAAAGTTGCTGCAGTCATGACTGATCACATGGCGTAATCACTTATTTATTTATGCATTTATTGCAATACCAACAAAAGATTCACAGGACAAATAAAACAGAATAAAGTCTTTACAAACTATAGTTCATTATTAAACAATAAGGGAATTATAAACTAAATTTGAGTTGCCTATTTAACAAA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa14077
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000083395 | Essential Splice Site | 553 | 730 | None | 19 |
ENSDART00000147159 | None | None | 50 | None | 4 |
ENSDART00000083395 | Essential Splice Site | 553 | 730 | None | 19 |
ENSDART00000147159 | None | None | 50 | None | 4 |
The following transcripts of ENSDARG00000059746 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 8 (position 50043071)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 8 | 47895048 |
GRCz11 | 8 | 47884040 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CATTCATCCAAATTATTCCAGAGTTTTAAAAGACGAGTTWATAGAAACAG[T/C]GAGTATTCACCCAAGCAATAAAATTACACAATCTATGAATTGACCCTATA
Long Flanking Sequence:
TAAAGCAACTGTGTGATGCTATCATGTCAATATGGAGCAAAAACTCTGAGGAATACTTCCAGTACTTTGTTGAATCTATACCAAGAAGGATTAAGAATTTCTGAAGACAAAAGTGTGTCCAACCTAGTACTTGTAAGGCATACCTAATAAAGTGGCCAGTGAGTGTATAATGCAATTTGACATTTTTGGATAAATATATTGAGATATGTTTTCTCATTCCCAGGGTGTCTTTATGTTTGTGACAAATATGGATACTTTCGGTCGAGTTTTATCGACCGACAATTACCAAACAAACCACTTGCACAATGATCTCTGGCAGATCTTTGAAAATCCTGTGGTAAGATTACATTTACAAATATTATACTGGAAATGCATCATTTATTGTTAGTTTACGGTGTATTTTTTGTCTTATACTTTTTTTTCTGTGAAACAGGAATGGGAGGAACGATACATTCATCCAAATTATTCCAGAGTTTTAAAAGACGAGTTTATAGAAACAG[T/C]GAGTATTCACCCAAGCAATAAAATTACACAATCTATGAATTGACCCTATAAAAGTCACGTAAAATTGCTTTGAAGTGTGTATTTTGAATTCGATGTTTGACACAATCTCAACCGAAACACGAAAAGAGGGAGGGATATAGTGTAGCTCATCCCCTTTAAAAAACAGCCAATAGCGTTTTGCTTGATCTCCGCTCTGCCAGTGAGAATGGTTTGGTGCATTTGACATGAAGCACAGCTGCAGCCGGTGATCTACCTGATTAGCCGAGCGCAGGCGGGGGCGGAGTTGAAAACGAAGCCACCAGGTTGGACACTTCGGGGCTCAAAGTTGCTGCAGTCATGACTGATCACATGGCGTAATCACTTATTTATTTATGCATTTATTGCAATACCAACAAAAGATTCACAGGACAAATAAAACAGAATAAAGTCTTTACAAACTATAGTTCATTATTAAACAATAAGGGAATTATAAACTAAATTTGAGTTGCCTATTTAACAAA
Associated Phenotype:
Not determined