ZMP
zgc:55318
Ensembl ID:
ZFIN ID:
Description:
Contactin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q7ZW34]
Human Orthologue:
CNTN5
Human Description:
contactin 5 [Source:HGNC Symbol;Acc:2175]
Mouse Orthologue:
Cntn5
Mouse Description:
contactin 5 Gene [Source:MGI Symbol;Acc:MGI:3042287]
Alleles
There are 5 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa36716 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
| sa17204 | Nonsense | Available for shipment | Available now |
| sa25072 | Nonsense | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa36716
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > T
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000034225 | Essential Splice Site | 135 | 601 | 4 | 13 |
| ENSDART00000098639 | Essential Splice Site | 343 | 1114 | 9 | 24 |
| ENSDART00000098641 | Essential Splice Site | 285 | 936 | 7 | 23 |
| ENSDART00000124211 | None | None | 305 | None | 6 |
Genomic Location (Zv9):
Chromosome 18 (position 40667818)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 18 | 42277398 |
| GRCz11 | 18 | 42276440 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ATATTTATGTTTTGTATTTATTATTATTTATAAATTTACTTTTTGTCTTC[A/T]GTCCTGTCCCCACAATCACCTGGAGGAAGATGAGTGGAAACATTCCCAAA
Long Flanking Sequence:
ATCCAGATCTGTCTTTACATTACTGTGATGGTTGGGTTTAGGGTTGGTGTAGAAGGGGTAGACATTAACAAAATACAATTAATGGGAAATTTTATAAATTAAATAAATAATTTTCGTTAACTTCTGGCCGCAGCCATATGTGATCTATAGCTGATTAACCTAGTGGATGAATGATAACAGCCTTCTGCGGCTACTGGCCCATGTCTTTCAGCTGATAACCACTAATAATGCCCATTCCATTGATAGATAACGTTCAAATCGGCTGAAAACTGGAAACTGTTCATTAAGAAATATGTTTTACATGTGTCAAATTGGATTGTTCCAAAGTCTAAAAAGTTGGTTGAGATTCTCAAAAACAAAATCTTGCTAGTCTCGAGTGCCTTGGAGTCCACACCTTTTTTTTTATATTTAAGATGGTATAAAAGAAAGCATTTAGATGTTTTCATTTAAATATTTATGTTTTGTATTTATTATTATTTATAAATTTACTTTTTGTCTTC[A/T]GTCCTGTCCCCACAATCACCTGGAGGAAGATGAGTGGAAACATTCCCAAAAAAGCCCGTCTTCGCAAATCACAGGCTGTTCTCGAGATCCCCAACATCCAGCTAGAGGATTCTGGGAGTTACGAGTGTAAAGCTGAGAACACCAGAGGAGGCACCGCTTTCAGAGGACACCTGCAGGTCTACAGTGAGTACAGAAAAACACGTCCCGCTGATCATTAAAAAGGACAGTTCTACATGCTTTATGCTTTTAATATATATATGCGATAAGAACGAAAATGAGCAGGATGAATCACTTTGTGGTGCTCCTCATTTGTAAGTAAGTGATAAAGGCATCTACTAAATGAATAAATGTAAATGAGCAAGTGGAGAACTGATAATGGTGAAAGCCAATTCAGGTTTGTCCTACGGACATGAATGATGCTTCAAATCATGTGGGTTGTTTGGAAGAGATATGCTATTGCTTTCCTTTTGTGATTGCACTAATGATATTTGCCTGCTGGA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa17204
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000034225 | Nonsense | 318 | 601 | 7 | 13 |
| ENSDART00000098639 | Nonsense | 526 | 1114 | 12 | 24 |
| ENSDART00000098641 | Nonsense | 468 | 936 | 10 | 23 |
| ENSDART00000124211 | None | None | 305 | None | 6 |
Genomic Location (Zv9):
Chromosome 18 (position 40639265)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 18 | 42248845 |
| GRCz11 | 18 | 42247887 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TTGGGAAAGACGTGTCTCTAGAGTGCCGTCCTCGTGCTTCACCCAAACCC[A/T]GAATCTCATGGAGGAAAAACGACCGAAGACTTCAACCCAGCCGAAGGTAA
Long Flanking Sequence:
ACCCATGATGCGAATCCGCGTTTATTGTGACGGGAATTTGATGCTCAAAAGAAGAAAATTTGATGCGTGAATGAAGTTAGTAAACTCAGAATGTTTACGCATCTATTTATGCTCCAAAAGTGCAATTTATCAGCACATACCGAATGTGGTGTGAACTTAGCGTCAGACAAAAGAAGTCTACAGTGTTCATCTGTGCATCCTAAAACTTCAGTTATTTAGGGAGACAAAAGATTCCAGTTAGTGTGCTGTTTCATTTTTTAAGACCTTTTAAGCTACATATTACATGAAACATAAAAACGTGTCATAATAAGTGCAGTTTAATGACTAACTTTCCATTTTTGGGTGATCGAAGTTCAATTTTAATTATGTTATATGTTTTTTTTGTTGTTGTTTTTTTTATAGCATCAGCTCCCATGTTCAACAACAACCCAGTCCGTCTCATCGCAACCGTTGGGAAAGACGTGTCTCTAGAGTGCCGTCCTCGTGCTTCACCCAAACCC[A/T]GAATCTCATGGAGGAAAAACGACCGAAGACTTCAACCCAGCCGAAGGTAAGTAAGAGAGTCCCAGCTGAAGCGCAGTTTAGCTTCGTGACCGAACATGTTTTGCATGAAACTGTGATAATTATCAGGATTCGGGATGAAGCAGTGGCAGTCCACTCCTAAGGGTCTGTGTTTTTAATTGATTCCAATTAAATATGCCCATAAACACGCATACATTTACATGAATCTGTGTGCTCAGGGGCTTTAATCAATGTTCTTGTCCAATGATTACCGGTCTCATGCTGGGTTTAGCTCTGCTAAGGTGCGATGCGGTGACAGGTTTGTTTGCACTCTCACAGCTATTAAGCTAGTTTGCTATGCAAGGTTGCATTGTGATTGATGTCATGCTGATTTCCTATTATTGTCAGGTTCATTCTTTTGGATTTTATATATATAGCAGTTGCCAAAAGGGATGTCAGGCCTAGGAAAAATGCTAAATTTGTACTTTATTTTGTCCAATGTT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa25072
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000034225 | Nonsense | 468 | 601 | 10 | 13 |
| ENSDART00000098639 | Nonsense | 676 | 1114 | 15 | 24 |
| ENSDART00000098641 | Nonsense | 618 | 936 | 13 | 23 |
| ENSDART00000124211 | None | None | 305 | None | 6 |
Genomic Location (Zv9):
Chromosome 18 (position 40597761)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 18 | 42207341 |
| GRCz11 | 18 | 42206383 |
KASP Assay ID:
554-7795.1 (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CTGGGAAATATGGCTGTCGAGCTCAGACCAGCGCTGACAGTGTGCTTGCT[G/T]AAGCTGAGCTGCTGGTGCGAGGTGAGTACAATTCAGGAAAATTCATAACA
Long Flanking Sequence:
AATTTTTATACTTCTTGTTTTGCTGAGGTGAAATAGAATATTCCTCACAGACACCACAGATCCACACAGACCATCCATGGCAGACAGTGGCACATGCAGCAGCAGCTGTCTGATTCATGTGCTGTAATTTTAATCAGCCCCTGTACTAAAGAGCTGCCTGTAGACCTTGAATTATTCGCAGTCTCGCCCGGGGCGTTTCTCATTTCCAGAGAAGAGCAGATTGAGGAAAGTAATGGCGCTCGTGCTCTTAAAGCGAACAGCAATCTCTTAATCCACACAAGCCAATAGAGACTGTAGCAGCAGCCCATTGCTCAGGTGTCAAGCACCACGCGGAGGTCTATTTCTCTCTTTACCTCACTTCCCCTGTGTGTGCTCTCTTTCTGCTTTTCCCAACAATTTAGCAGTCCTCCACCGCAGACCTGATGATCAGGAGCATCCTCCTGAAGCATGCTGGGAAATATGGCTGTCGAGCTCAGACCAGCGCTGACAGTGTGCTTGCT[G/T]AAGCTGAGCTGCTGGTGCGAGGTGAGTACAATTCAGGAAAATTCATAACAATATATGGGAATACAGCATCTTTGCAAACAACATGAACGCCAAGTTGACCCTGTTGACTTTCTGAATACATTTCGGTAGTTTTATTATGCATGAAGCATAATAGCAAGAGAAGCACAAACATTTATCCCTCTGGCTTATAAAATAAGAATCAGGGTAATTTGTATTTTCTCCGAATAGTTTGTTGTCTATTTTTTTATTTATTTTTTTTTTAGTTTGAATGTGCATGTGTCTAAAATTAACATAATATTATTTTTTCAATGGGTCTTTTAGCTGTATAAATATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTAGTGCTGTCAATCGATTAAAAAAACTATTAATCACACTTTTTTGCAATTAATTACAATTAATCGCGATTAATCACATTTAAAAGACTGAACCTTGTAATTTTTTATA
Associated Phenotype:
Not determined