ZMP
smg5
Ensembl ID:
ZFIN ID:
Description:
protein SMG5 [Source:RefSeq peptide;Acc:NP_001020094]
Human Orthologue:
SMG5
Human Description:
Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans) [Source:HGNC Symbol;Acc:24644]
Mouse Orthologues:
AC101827.1, Smg5
Mouse Description:
Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans) Gene [Source:MGI Symbol;Acc:MGI:2447
Alleles
There is 1 allele of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa16480 | Nonsense | Available for shipment | Available now |
Mutation Details
Allele Name:
sa16480
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000060809 | Nonsense | 462 | 1099 | 12 | 22 |
Genomic Location (Zv9):
Chromosome 16 (position 48774506)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 16 | 45743727 |
| GRCz11 | 16 | 45710443 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ATGAAGAGGAGGAGGAAAAGGAGAACGGGGAAGACGAGCCTAAAGGCAAC[G/T]GAAGAACTGTGGCGACAAAGAAAAACCAGGAGAAGAAGAGATCAGCCGAG
Long Flanking Sequence:
ACAATTCTTAAATTAAGAGGAAATTTCTAGACATTTCTAGCCAAATATGTTAAAATAAAGTCAGTTTTTCTTTTTTTAAAACGACAATATTTTTTGCTTGTCTAGAAAATGCTTCTTGATATTTGGATTAGAAACTAGAATATATAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATTATTATTATTATTATTATTTTATTTTTTTCTCCAGTTAAGCCTGTCGCAGTACTGCATTGTGTGTACTTGGGACATGGTGTAATAAGAATTTTGTAAAGCCTTTGTCTATTTTATTTCTCTTGTAACTCCTCTCTAACCGATGCATTTGTTGGCAGATGACGCTGATGCCAGAGATCACAGTAGTGCTGCTCTCTCAGAGGAGCGAACCCTGCAGAACGGCTCTCTGGAGGAGGATGACGATGAAGAGGAGGAGGAAAAGGAGAACGGGGAAGACGAGCCTAAAGGCAAC[G/T]GAAGAACTGTGGCGACAAAGAAAAACCAGGAGAAGAAGAGATCAGCCGAGGAGAAGCAAAAACAGAAGCGGAAGTTCTCAAGGCTCTCCATGCTTCGCCGAAGACGCTGTGCTCACAAGGAGGATGAGAGCGACCTGAGTGAGGGCTTTGAGAGCGATGAAGAGGAGGAGGAGGAGGAGGAAGGTGGTGGCGGTGGTCTGGTTGATGGTCTGGGAGCCCCCAGGGTCCAGATGAACTCTTTAGGAAGAGACACACGGAAGGGGCCACTGCCGGAGGACGGCGGCTGGGAAAGCGGTTCAGAGGAGGATGAGGGTGGCACGGCTTTTGACGTGGAGACAGACTCTGACATGAACAGTCAGGAATCGCGATCGGATCTGGAAGACATGGAGGATGCTGAAAATGCACCACAACAGCCACAACAAGAGGAAAATGAGCAGCCGCAAACGTCTAGAGAGGAAAACGCCACCCCTCCAGTAACCAATGGGCCGTCTGTGTCTAAT
Associated Phenotype:
Not determined