Busch Lab

ZMP

col11a1a

Ensembl ID:
ENSDARG00000026165
ZFIN IDs:
ZDB-GENE-070209-167, ZDB-GENE-070209-167
Description:
collagen, type XI, alpha 1 [Source:RefSeq peptide;Acc:NP_001077313]
Human Orthologue:
COL11A1
Human Description:
collagen, type XI, alpha 1 [Source:HGNC Symbol;Acc:2186]
Mouse Orthologue:
Col11a1
Mouse Description:
collagen, type XI, alpha 1 Gene [Source:MGI Symbol;Acc:MGI:88446]

Alleles

There are 9 alleles of this gene:

Allele Name Consequence Status Availability
sa13850 Nonsense Available for shipment Available now
sa32491 Essential Splice Site Available for shipment Available now
sa24520 Essential Splice Site Available for shipment Available now
sa11965 Essential Splice Site Available for shipment Available now

Mutation Details

Allele Name:
sa13850
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000003503 None None 231 2 67
ENSDART00000042065 Nonsense 78 1736 2 66
Genomic Location (Zv9):
Chromosome 24 (position 29808990)
Other Location(s):
Assembly Chromosome Position
GRCz10 24 28807306
GRCz11 24 28886465
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CKTCAGGATTCTGCACAAACCGAAGAGCATCACAGCCAGACGCGGCCTAC[A/T]AAATCAGCAAGAATGCCCAGCTCAGTGCCCCGACCAAGCAGCTTTTCCCA
Long Flanking Sequence:
AGGGAAGGCTAAACTGTCCGTGGTGTATGTGTGTGAATGAGTGTTTCCCAGTACTGGGTTGCAGCTGGAAGGGAATCCACTGTTTAAAACATATTTTGGAGTAGTTGGCGGTTCATTCCGCTGTGGCGACTGCTGATAAATAAAGACTAAGCTGAAGGAAAATGAATGAATGAATGAATAATATAATTCATTCCAATGTTTTTTTTTTTTTTTTTTTTTTGTTATTGTAAGTGTGGATGTTAGAATGTCATTCTGTTGAAGCTGAAGTTAACTGCAATATAATAACGTTAATCATTTGCTAAACATTTGTAAATAACAATATTTCTAATGTATTTCCCACTATTATTTATCTGCTGACATTTTGCATGTCTTTTCTACTCTGTTCAGCAGAACCCGTGGATGTCTTAAAAGTATTAGAATTTCCCACTGTCCCAGAAGGAGTAGAGAAAACGTCAGGATTCTGCACAAACCGAAGAGCATCACAGCCAGACGCGGCCTAC[A/T]AAATCAGCAAGAATGCCCAGCTCAGTGCCCCGACCAAGCAGCTTTTCCCAGGTAAGCTGAACCCCACGAACATGTCTCCATATCCTGCCTACGTTCAGCTGCGTTTAAATGTGCCCTTTGTTACGGTTGCCAAGGCTTTTGACAGGAGATGCCATCCCTGATTGTGCGGGGCCATGTTTCACTCAGACGCTTGTATTGTTAAGCGCTCGGAGAACTTGGCTGAAATCTCTTGACCGCAGCATGGCTCGTCTGCTTAGTTGCATAAGAAATGAACAAATGGTTTTAAAGAGAAAGTTCACCCACAAATAAAATAATCACCCTTATGACTTCTTTCGTTAGGGAAATGCAAAAAAAAAGATGTTTAGCAGAATGTTCATGCTGCACTTTTATGTGCAAAAAACAACTAATGACCATTCATACAAATGTAGCATTCAGCTTGTGCATTACATTCCCAGTTATCTGAATGTATCTGATACCTTCAAGATGCATGATGCCAGGGG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa32491
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
A > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000003503 Essential Splice Site None 231 8 67
ENSDART00000042065 None None 1736 None 66
Genomic Location (Zv9):
Chromosome 24 (position 29771915)
Other Location(s):
Assembly Chromosome Position
GRCz10 24 28770231
GRCz11 24 28849390
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TTCCCTCCATTGCTCAAACTCCCTTCCGCCGCATTGCTTTGGGTGTAATA[A/C]GGCCATGGAAGAGGAGAATTTTGGTGATTATATCACCGAGACGGCCCAGG
Long Flanking Sequence:
TTTATTTTATTTTATTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTAATTTATCCAAAAAACTAAACTCGAGAAAGCTTGTCCATTTGCTTATAAAGTAATTATAGTTTATACTGAGCTAAAAAATACCTTGTGGCTTTATGTTTAAACATTTTAAGCCATTAAATCTCCATTACTATTTCCTATTGCTGTAAATTGTACAATGTGATTTACTTAACCAAATTTAATTAACGCCTTACACTCTCTTAATCCACCTATGAATCAATGCAATTCGAATCACTTCAATGGGACAAAGAAGTGTTACCTTGTTGCCAGCCAAAATCGATGGCCATTAATCATGCAATTCATTTTGCTCTTGCTTTGCTTTAGATACAGTAGTAATTGCTTTAACTGCTAAAACTAACATCCATCTTCCCTCCATTGCTCAAACTCCCTTCCGCCGCATTGCTTTGGGTGTAATA[A/C]GGCCATGGAAGAGGAGAATTTTGGTGATTATATCACCGAGACGGCCCAGGCTGGTCTGGATCCGACCGCTGCCTCAGAAGCTGTGCTGCCCAGTGGCACCGCTGACCCCATCGGAGTGGACTCGTATGACTTTAAGGAGTATGATCTTAAGGAATATGATGTGACTGGGCTTGACAAAAATCAGTATGAGTATGGGCCTTATGATGAGTTTGGCAATGTGGCTCCAAACCCAACATCCAATTACGAGGACACTTTTGGGCCTGGGGTTGCGGCCGAAACCGACATCGCTGAAACAGACGTAAGTATTGAGCCCTGAAATGAGCGTGTCGTCCAAGCACTGGGATTGTTGGATATGGAAATCTAGCATGTGTTGTTGACTCTACAGTGTACTATTCTGCATGGGGTCTGTCCGTTTTATTCTCTCCTCTAGAATGCATTTCTTCTCTTTTATCCACATTAGTGTACTCTTTCTTTCGTCTCCATCACACTGATTCACAGAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa24520
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
T > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000003503 Essential Splice Site None 231 None 67
ENSDART00000042065 Essential Splice Site 528 1736 None 66
Genomic Location (Zv9):
Chromosome 24 (position 29759750)
Other Location(s):
Assembly Chromosome Position
GRCz10 24 28758066
GRCz11 24 28837225
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGCTGGAGCTGATGGTGCCCGAGGAATGCCTGGAGAGTCTGGATCTAAGG[T/A]ATGGAAAATGTTTATTTGACCTTTTCATGCTCACATATAAGTTATGCTGT
Long Flanking Sequence:
TACACCAAGATAATGGGGACATTACCTATGTCTGCCAGAAAAGGAGAAATTGACTCAAAATCAGTCTGATTATCTTGTGGTGTGTGTCCTGTTCTTCCCCATGAGCGTTTGAGTGTATGGTTAAAAACTAGCTTAGAGGGTTATCTGCTGTCAAAAACAAAGCCCAGCATCTTATCAAGAGTGAATAGAGATGCAGTTAGAAAATCTCAGAATAGATTTAGAATTGATATCTTGAACATTTTTCCCCCCTCAGCTCTAATGTTAGCCTATCCACGGAAGCATATGTAAAAGAGAGCTCAGAATTTGCCCACTAAAAGAAAGATGGCATTGTTTCAGATATATTTTATTATCAAAACATTACCTAAATATGAATACTTTTGACAACAATAGTTTGGTCACATAATAGTTCTCAAAAATAGTATAATGCCTGATTGATGTGTGACAGGGTCGTGCTGGAGCTGATGGTGCCCGAGGAATGCCTGGAGAGTCTGGATCTAAGG[T/A]ATGGAAAATGTTTATTTGACCTTTTCATGCTCACATATAAGTTATGCTGTACTGCTTAACATATTGCTTGATTATCTTACTTGGTCATCTTCAAAGGGTGACAGAGGTTTCGATGGGCTTCCGGGTCTGCCTGGTGAGAAAGGACACAGGGTGAGTAAACAATTGCAAGTAGATGCAAGTTGGTGATAATTAATTAGTTTTTGCTGAAGACACAAAGTATTGAGTGATTTAATTTGGCACAGCAAACAATAAAGAAACTCAATCTAATAAGGAATTTAGTTATTAAATGTCTAAATATATTAAAAGGAATTTGCATAAAGACACTACAATATATGTATGTTCTTAAACAGGGGTTTTCAACCTTTTATATGATTTCAGATGATCCTAATTTCTAAATTGTTTTCAGGCACAATCCTTGTATGAGTTTAGAAAGAAAATGTGTTCTTATTTATTTGTATTGTTACTACTAATGCGTTGACTATTATTTATTCCTCCAAATT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa11965
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
A > T
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000003503 Essential Splice Site None 231 None 67
ENSDART00000042065 Essential Splice Site 1258 1736 None 66
Genomic Location (Zv9):
Chromosome 24 (position 29717060)
Other Location(s):
Assembly Chromosome Position
GRCz10 24 28715376
GRCz11 24 28794535
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
AATTGTCAAGTTNNNNNNNNNNNNNNNNNCTGTNNNNATCTAAAATCCTC[A/T]GGGAATAGATGGAGGCCCAGGAGAGAAGGGAGAGGATGGAGAGTCTGGTC
Long Flanking Sequence:
GGGTGCTCCGGTTTCCCCAACAGTCCAAAGACATGCACTATAGATAAATAGCCAAATTGAATAAACTAAATTGGTTGTATGTGTATGAATGTGAGAGTGTATGGGCATTTCACAGTACTGGGTTGCGGCTGGAAGGGCATCCACTGCATAATACATATGCTGGATAAGTTGGCGGTTCATTCCGCTGTGGCGACCCCTGATAGATAAAGGGACCAAGCTGAAGAAAAATGAATGAATGCATGAAGATGCCAGTCTGTTAAATTGTGTGTTCAATCTTTTTTTCTATAGGGCCCTGTTGGTTTTCCTGGAGACCCAGGTCCACCTGGTGAGCCAGGTGTTGCTGTAAGTGCCGAAATCCATCAATTAAACAACTGTAACTTACTTTTCTATAAATAACTTTTCCATGTACAAACACCTTGTAACTAGATAAAGACATTTGCTTATTTTGTCAATTGTCAAGTTATTTGCCTCTAAAATATCTGTTTGTATCTAAAATCCTC[A/T]GGGAATAGATGGAGGCCCAGGAGAGAAGGGAGAGGATGGAGAGTCTGGTCAGCCTGTGAGTATTAACAGCATTTCGAGGCCATGCTTTTGACTACAGTTTATAATTTCCTGCGCTATGCATACTTAGTCATTTAATTCAGGCAACAATTAACTAAAATATAACTATTTAAATTGTTTATTTGCCATTGCATAAGTATATGTACATGCACAGTGCAGAAAGATTAATAAATGGTGATTGGATATAGGGAAGTCAAATATAATTGACTGAGCCTACAGTGGCAGCTCATAAATTGCAGTCCTTATTAACATTTATTATAGTAATTTGAATTTTCCACTGCAGGGAAATTGGTTAATTTACCATTAAATTCAGTGTATCGGAACTCCAGGTTTGCAAATGTGAACATCTAGCATTGGGAGTCTCTCTGCAAGGCCCATTGATAAGCTACAACTCTCCATGAAAGTTTAATGAGGGGAGATTTGTTTACAGCAGCAAACTTTCA
Associated Phenotype:
Not determined