Busch Lab

ZMP

si:ch211-146l10.2

Ensembl ID:
ENSDARG00000063573
ZFIN ID:
ZDB-GENE-030131-6671
Human Orthologue:
VPS41
Human Description:
vacuolar protein sorting 41 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:12713]
Mouse Orthologue:
Vps41
Mouse Description:
vacuolar protein sorting 41 (yeast) Gene [Source:MGI Symbol;Acc:MGI:1929215]

Alleles

There are 8 alleles of this gene:

Allele Name Consequence Status Availability
sa24448 Nonsense Available for shipment Available now
sa18279 Essential Splice Site Available for shipment Available now
sa24447 Essential Splice Site Available for shipment Available now

Mutation Details

Allele Name:
sa24448
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000092975 Nonsense 370 854 13 29
ENSDART00000143390 Nonsense 370 855 13 29
ENSDART00000145845 Nonsense 351 736 11 24
Genomic Location (Zv9):
Chromosome 24 (position 9722666)
Other Location(s):
Assembly Chromosome Position
GRCz10 24 9781550
GRCz11 24 9921936
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CATCGTAGTGGCTAAAGAAAGAGACCAGGATGACCACATTGACTGGCTTT[T/A]GGAGAAGAAGAAATATGAGGTACATGTCTAAGCAGTATGTATTGTTCAGG
Long Flanking Sequence:
ACAATGGCATTCAAACTCACACTGTTAGCTTTTAACACTGACTAAAGCACATGAGGTGTACCTGAGGTAATCATAATTCATCTTGTTGTTCAGCTGCTAAAAATAGAAGCCATTTCTAAAATATAAATTCAAAGTGTGGGTTGGAACAAAAACTCCTTTTAATATGGAAAATATTCTTCTATAGCCGTTGCTTTCAGTTATACATAATTTAAATCAACTTTAAATCAGCCTTTAGGCCTTTAAGCTCGATAGTCACTCGCTTCTGTTGGTCCTCAATCTGGCAACCTGCGCTTGCTTGTGTTTTGATCCAGGAATGCAATGCCTAGTTCAACCACTGGGTGTCAAACTTACATACTGCACCTTTAATGATCATTATTTTAAAGTTCATCTGTTTGTGCTTATAGAACACTCTGAGGGAGAGTCTTTATTCTACATCATCAGTCCTAAAGACATCGTAGTGGCTAAAGAAAGAGACCAGGATGACCACATTGACTGGCTTT[T/A]GGAGAAGAAGAAATATGAGGTACATGTCTAAGCAGTATGTATTGTTCAGGTATGTGCCAAAAAGCTAAAATATTGAGGGAAAGTCCATTTATTTCTATAAGTTCTTTCAAAAAGTGAATGTTATGTTAGTTAACTACACACAAAGTGAAATATTTCAAGCTTTTATTTGTTTCAATTTTACTGGTTATGGATTACATAAGTTAGATCACAAAATTTGATTATTTCATGCATGTGACTTAATAAAAGAAAGCATCCTAAACATATGTTGAGCTTCTGAAAATTGTGTTGATGCACTTTATTGTGTCCTTAGTACTTTGTTGGGGCTGCAAGCATCAAGGTGGTGTTGCATGGAGCCTTTGACAATGTTGAGATGTTATTGTAGCCTAATTTGCTATAATATTACTGGCCTTCAGCTCTGCATTTTGGGGTCTCTGTTCTCTCATCTTCCTCTAGACCAGGGGTCACCAAACTCCTGGAGGTCCGGTGTCCTGCAGATTTTA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa18279
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000092975 Essential Splice Site 395 854 None 29
ENSDART00000143390 Essential Splice Site 396 855 None 29
ENSDART00000145845 Essential Splice Site 377 736 None 24
Genomic Location (Zv9):
Chromosome 24 (position 9720508)
Other Location(s):
Assembly Chromosome Position
GRCz10 24 9779392
GRCz11 24 9919778
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
AATGGCAGCAGAGATCAGCTTTAAAAATATTAAAAGGCATGATGTACAGG[T/A]AAAATCAAATGGCAAATGTGGATTAWTGAAGTGYGGAAGAATNNNNNNNNTATTACCT
Long Flanking Sequence:
ACAAATTGTTGAAATAAACAGACTTTCACTCGATATTCAATGTTTTGGCACATACCTGTACATGGCGAGAAGCACTCAACTAGCTTTTTCCAATGAGGTGAGCTATTTGCACTTAGCCAAAATAGACACTCCAAATCGGCATTTTAAACAGTTAAACTATATAGTATAAGATAACACACATACAGCTGCCTAAAGAATGCTGTTTTCACACTACTTACAGGTAGCTCACGTGATCAGTATACTGTATCAGTTCAGAATGCTCACCATGTTACATAACTGCCCCCTGCTGGCCATGTTTTTCTTGTGTTAAACCATGTTGTGTTGTGACGCAGTTTACTGCGGAAATCACTCGCGTGTTCTCAGTAGCCATATCTGTATATAACATTTAAAAATCTGAGTTGTGCTTTAATGATTTCTGACTTGATTTGGATCTTTTTTACAGGAAGCACTAATGGCAGCAGAGATCAGCTTTAAAAATATTAAAAGGCATGATGTACAGG[T/A]AAAATCAAATGGCAAATGTGGATTAATGAAGTGCGGAAGAATTATTACCTCCTACATGATCTGTAATCATAATGTGGGTAATTGCTGAATGTGTTCTGTGTATAGAAAATTGGAATGGCGTACATCAATCATTTGGTGGAGAAAGGAGATTATGACACAGCTGCCAGGTACGGGTCATCAAGAGTGTGATTTATATACTTGTAAACCATTTATGCCTGAAATTTATACTCGTTTTATTCATTTTCTCCATATTTCCCATTGACAGAAAGTGTCAGAAAGTGCTAGGAAAGAATATGGATCTTTGGGAGAATGAAGTGTACAGGTTCAAAACAATTGGCCAGTTGAAAGTGAGTGTGTCGAAATTGTGCTTTATATGTTTATTATTTTTGATGCCCTATAGAACCGTAATTAGAATAGTACACTCTAAAAAATATTGTTTAGACTAAACAAAAAAAAATTAACGGAACAGTTTGCATCAGTATATTCAAGCTACAACAAGA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa24447
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
A > G
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000092975 Essential Splice Site 517 854 19 29
ENSDART00000143390 Essential Splice Site 518 855 19 29
ENSDART00000145845 Essential Splice Site 499 736 17 24
Genomic Location (Zv9):
Chromosome 24 (position 9714311)
Other Location(s):
Assembly Chromosome Position
GRCz10 24 9773195
GRCz11 24 9913581
KASP Assay ID:
2261-8453.1 (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TAATATAGACCCCCCACCCACTTGCTAATATGTATGTGTTTGTTATGTAT[A/G]GATACACATATGATCAACGTTATGATCGAGCTCTGGAAATCTACCTGAGA
Long Flanking Sequence:
TAGTGAAGTAAAGTACTGATACCAGTAAAATCTACTTAAGTACAGTAACAAAGTATTTGTACTTTGTTACTTCCCATCTCTGGATTTATTTGATAATAGGCTACTGGACTTATTTTTCTATGAGAGTTTGAACTTTCAGAGTGTTTAAATAAGAAAGAAAAGTATGAAAATGTTAATGCCTGTCTGAGAAAAGGGTATAAAGTATGTAGTGAGGGGTTTCCTTCTATAATAATTGTAAGAAATAAAGCTGATTACTTTGCGGATTTCGGCTATCGTGGGTTATTTTTACAACATAACTCCCACGATAAACAAGGACCACTGTATACTATTATTGTATTGTTGGTGGAACTGTTTAGTATCGGCAGAATTCAGAAGTGTTTTTGAGTTTATTCAATTATTTATTTACTTGTCAATAATATAGAACTTTTTGTATAGAACAATATAGAATAATAATATAGACCCCCCACCCACTTGCTAATATGTATGTGTTTGTTATGTAT[A/G]GATACACATATGATCAACGTTATGATCGAGCTCTGGAAATCTACCTGAGACTGAGACACAAAGATGTTTACCAGCTCATTCATAAACACAACCTGTTCTCCTCCATCAAGGACAAGATTGTCTTGCTCATGGATTTTGACAAAGAGGTACAACATCTTTTTTTAATTCCTATGACCTCACCGAGGACCTTTATTTTAGAATTTAATACTGAAAACTTGAAAGGAAATGTCAAGTGCATAAGTTCAGGAAGTTATGGATTGTTTGGCCGATGATATATATTATAGATGACATTGGAAGAATGTGATTTATAGTCACAGAGATGTGTCTAAAGGATATGTCCGGCTCTTTGTTCTGTTTTTTTCCTCAGAAAGCTGTTGACATGCTGCTGGATAATGAAGATAAAATATCGGTGAGTTCAGTGCAGTGGCCTTAGTCTTCTGATTAAACGCTCCACTTTTTTTGGAAATAGACTCATTTTACAAGTTACTTATAGATAAACG
Associated Phenotype:
Not determined