ZMP

hoxc1a

Ensembl ID:

ENSDARG00000070337

ZFIN ID:

ZDB-GENE-000822-2

Description:

Homeobox protein Hox-C1a [Source:UniProtKB/Swiss-Prot;Acc:Q98SH9]

Human Orthologues:

HOXA1, HOXB1, HOXD1

Human Descriptions:

homeobox A1 [Source:HGNC Symbol;Acc:5099]
homeobox B1 [Source:HGNC Symbol;Acc:5111]
homeobox D1 [Source:HGNC Symbol;Acc:5132]

Mouse Orthologues:

Hoxa1, Hoxb1, Hoxd1

Mouse Descriptions:

homeobox A1 Gene [Source:MGI Symbol;Acc:MGI:96170]
homeobox B1 Gene [Source:MGI Symbol;Acc:MGI:96182]
homeobox D1 Gene [Source:MGI Symbol;Acc:MGI:96201]

Alleles

There are 2 alleles of this gene:

Allele Name	Consequence	Status	Availability
sa37766	Essential Splice Site	Mutation detected in F1 DNA	Not yet available
sa24386	Nonsense	Available for shipment	Available now

Mutation Details

Allele Name:

sa37766

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

A > C

Consequence:

Essential Splice Site

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000103131	Essential Splice Site	189	302	2	2

Genomic Location (Zv9):

Chromosome 23 (position 36234696)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	23	36084349
GRCz11	23	36183152

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

TTATATTATATTTATGCTTTTAATATACATTTATATTGCATTTCTTTTAC[A/C]GCTAAGATACAACTGGGAAAATGCTCGGACCGGGAGCTGAAGACGAACCA

Long Flanking Sequence:

GAAATTAAAGATGTCAGTGATAAAAGTTTCTAATATCACTGTTAAAACTCTTTTAATGTGTGTCTTTTAATATGTTATTACTTTTATATAGGCCTATGAAAATGTATTACATGACAAAAGAGCAGCACATTAATATAACAGTATTTTATTAGGGCTTATGCACTACTATTTTACATTCATAACCTAGCGTTTTGTATATGCATAGATTAAATCGTTTACATTGTGCTCAACTTATTATAAATATCAATGCAAATATTTAGTGATTGTAATACCCAATAAACTAGAAACAAAAACAAAACGTTTGGTACCTGTTAGTTTTTTCGCTGTCGTTTGATTCTTAATGACATTATTTAACGATATGCTTTCATTCTGCTTTCAAATAGGCTGTAATCATTTTTAAAAACTGAAATAACATGCAATGTTAGCACTTTTGCAATCCCTGAATTTACCTTATATTATATTTATGCTTTTAATATACATTTATATTGCATTTCTTTTAC[A/C]GCTAAGATACAACTGGGAAAATGCTCGGACCGGGAGCTGAAGACGAACCACGGACGAGATTCTGACGAGGACACTTCGAGTGGAGGCTCGCGAACTAATTTTACAACGAAACAACTCACAGAACTTGAAAAGGAGTTTCATTTCAACAAATATCTGACTCGAGCCAGACGGATAGAGATCGCAAACCCTCTCCAGCTGAGCGAAACACAAGTGAAGATCTGGTTTCAGAACAGACGCATGAAACAGAAGAAAATGCTGCGGGAAGGCCTAGCTCAAGGATTAATGCTGATTTCTGGATGTGATGAGGACTCGAAAAAAAGTGACACTTGTTCATCTCCTGATTAAATAATTTTAATAGGGTAAGATTGTTGGGACGCTACAGAATGAACAGTCACGTGAAAATTAAAAGCGAGAGACAAGACAGTGATTCTGTTGAAATATCGAAATATATTTGCACGCCCGAATTTAAGTTTGCACCCCACATATTAATATTTATTTTT

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa24386

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC

Mutation:

C > T

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000103131	Nonsense	270	302	2	2

Genomic Location (Zv9):

Chromosome 23 (position 36234940)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	23	36084593
GRCz11	23	36183396

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

AGCTGAGCGAAACACAAGTGAAGATCTGGTTTCAGAACAGACGCATGAAA[C/T]AGAAGAAAATGCTGCGGGAAGGCCTAGCTCAAGGATTAATGCTGATTTCT

Long Flanking Sequence:

CAATGCAAATATTTAGTGATTGTAATACCCAATAAACTAGAAACAAAAACAAAACGTTTGGTACCTGTTAGTTTTTTCGCTGTCGTTTGATTCTTAATGACATTATTTAACGATATGCTTTCATTCTGCTTTCAAATAGGCTGTAATCATTTTTAAAAACTGAAATAACATGCAATGTTAGCACTTTTGCAATCCCTGAATTTACCTTATATTATATTTATGCTTTTAATATACATTTATATTGCATTTCTTTTACAGCTAAGATACAACTGGGAAAATGCTCGGACCGGGAGCTGAAGACGAACCACGGACGAGATTCTGACGAGGACACTTCGAGTGGAGGCTCGCGAACTAATTTTACAACGAAACAACTCACAGAACTTGAAAAGGAGTTTCATTTCAACAAATATCTGACTCGAGCCAGACGGATAGAGATCGCAAACCCTCTCCAGCTGAGCGAAACACAAGTGAAGATCTGGTTTCAGAACAGACGCATGAAA[C/T]AGAAGAAAATGCTGCGGGAAGGCCTAGCTCAAGGATTAATGCTGATTTCTGGATGTGATGAGGACTCGAAAAAAAGTGACACTTGTTCATCTCCTGATTAAATAATTTTAATAGGGTAAGATTGTTGGGACGCTACAGAATGAACAGTCACGTGAAAATTAAAAGCGAGAGACAAGACAGTGATTCTGTTGAAATATCGAAATATATTTGCACGCCCGAATTTAAGTTTGCACCCCACATATTAATATTTATTTTTAGATCCAGTTTAAGAAATTAAAGTAATGAATCTGACACGAACGAAGCTTGCTCACCTGTTGAGACAAGCGGAGAATATGATTTAATAAAAATGCACTTTTTAGCTTATATAATATTATTTTAATTTCGATATGTTATATACATTTCTGTTATTGAACATTCAATTAAAAAGACGCATCGGAATCATGATCAGGGATCAGTGCAAACGTGTCATAAAAATTCCTTGCATATTTAAAACATCAGGT

Associated Phenotype:

Not determined