Busch Lab

ZMP

cpsf3

Ensembl ID:
ENSDARG00000027649
ZFIN ID:
ZDB-GENE-030131-3275
Description:
cleavage and polyadenylation specificity factor subunit 3 [Source:RefSeq peptide;Acc:NP_001003836]
Human Orthologue:
CPSF3
Human Description:
cleavage and polyadenylation specific factor 3, 73kDa [Source:HGNC Symbol;Acc:2326]
Mouse Orthologue:
Cpsf3
Mouse Description:
cleavage and polyadenylation specificity factor 3 Gene [Source:MGI Symbol;Acc:MGI:1859328]

Alleles

There are 4 alleles of this gene:

Allele Name Consequence Status Availability
sa23728 Essential Splice Site Available for shipment Available now
sa37059 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa23727 Nonsense Available for shipment Available now
sa11209 Essential Splice Site Available for shipment Available now

Mutation Details

Allele Name:
sa23728
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
T > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000040292 Essential Splice Site 24 690 1 18
ENSDART00000139469 None None 99 None 2
Genomic Location (Zv9):
Chromosome 20 (position 29659228)
Other Location(s):
Assembly Chromosome Position
GRCz10 20 29730441
GRCz11 20 29633320
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ATGTACCAGTGCCTGCGGAAGAGAGTGATCAGCTCCTCATCAGACCGCTG[T/A]AAGTTCACTTCATTCACTGTCTTTAATAACAGTTCAGTTCCGCGCCAAAT
Long Flanking Sequence:
ATGAACAAACATATTCTTATAAAAAAGAAAGATAATACACTTTTATTGTGTATTTAGAAAAAATGTATATGTCCAGAAATGTGATTAATTATCCAAATTGTCTTACACAATTATTTTTTCAAAAGATATTAAAACAAATAAAAATGCAAATATGATCAAAATAATATATATTATAACAATATATATCTAAACAATATAATGTTAAAATGTAGTATTAAATTAAGCAGAAAGCTTTCTTCATCTAACCTTTATTCTATTTCTTCTTTTTCATGTTGAACTTTTATTTTGACTCGGAACTACACCGGAAGTACTTGTCCTGTGTCTACAGCGTGTGGTTTTCAGTTCACTTGATCGTTGTTTGGTATTATTGGAGGTATCGCTAAATATGCAAGAAGTATTACTTATTTAAGATTAAAACCATCACAAACATGGCTACCAAACGTAAAGCCGATGTACCAGTGCCTGCGGAAGAGAGTGATCAGCTCCTCATCAGACCGCTG[T/A]AAGTTCACTTCATTCACTGTCTTTAATAACAGTTCAGTTCCGCGCCAAATGTTTTCTCCACTTACTTTACTTTACATTTACAGTTTACATTATAATTCAAGACTTGTTGTACATTTTAGTTCGGAGTACTGTAACTATTAACGTAATGTTTGTAACAGAGGAGCTGGGCAGGAGGTTGGCAGGTCCTGTATCATCCTGGAGTTCAAAGGCCGCAAAATCATGGTAAGCATTGTTTTTGTTGTCTGCTCTAACGTTAGCCTTGATGTTTGAGCTTAAGTTTGTTTTATATTCGCACTTAAAGACTTTCTTCTTAATATTATAATTTCAGAAAAGTGTTATTTGCAAATTCCTTATAGTGAAATCATGTGATCAGTCAAGGACTATCAAAGTACAACATTGTTCACAGTCATTAAATATTGCAAATGTTGTTTTGAGGTCATACCTTCAAAGTAGCGTGGTTATCAATATAGGATCCTCGTCACAAGTTGTCACTGTTCAAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa37059
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > G
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000040292 Essential Splice Site 261 690 7 18
ENSDART00000139469 None None 99 None 2
Genomic Location (Zv9):
Chromosome 20 (position 29654147)
Other Location(s):
Assembly Chromosome Position
GRCz10 20 29725360
GRCz11 20 29628239
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ATCCCCGTGTTTGCTTTGGGCCGAGCCCAGGAGCTGCTTCTCATTCTAGG[T/G]AACGTCCAGCAGTTTACTCACAGCCACCTTATCAATAAGGCCTCATTAGA
Long Flanking Sequence:
CATTTTTGGGTGTGCGCCAGGAATTTGGTGGAGAGTATGTGATGCTGTACCTATCATGTACACTTGAGGCAGAAATATAAATTAGCCTTTACACAAACTATACACTTTCTGAAAATAATCACTGTGTTTACTTTTTGTGATCTCTTATTATTTTCAGCTGCTGTACACCGGTGATTTCTCACGCCAAGAAGACCGACATCTCATGGCTGCTGAGATTCCCAGCGTCAAACCAGACATTCTCATTACTGTATGTACTGCAATGCTAAAAATATGATTACCCTTAAAAAATAAGAGTTTTTCTCCCTTGTTTACCCATTAGTGTCCCTCTCATCTGTTTTGTGCACATAGGAGTCCACATATGGTACACACATCCATGAGAAGCGAGAGGAGAGAGAGGCTCGTTTCTGTAACACAGTCCATGACATAGTGAACCGTGAGGGCCGCTGTCTCATCCCCGTGTTTGCTTTGGGCCGAGCCCAGGAGCTGCTTCTCATTCTAGG[T/G]AACGTCCAGCAGTTTACTCACAGCCACCTTATCAATAAGGCCTCATTAGAGTCATCTGATATTCTGCTTGTCCTCCACTTCAGATGAATACTGGCAGAATCATCCTGAGCTCCATGACATTCCTATTTACTATGCTTCGTCTCTGGCTAAGAAGTGCATGGCTGTGTATCAGACCTATGTGAATGCAATGAATGACAAGATCCGCAAGGCCATCAATATTAATAACCCTTTTGTCTTTAAGCATATCAGCAATCTCAAGGTGAGCATCTTTAAAGTCTGTAAAATAGACTTTCTGGAATTGAGGCAGACATGTTCAGTAATTTAAAAATGTTAATACTAATAATAGATTTAATATATTGTGGAGATTGCATGTTCTCCACTGTGTGGGTTTCTCCAAAATCTGAAAACATGCAACAGATTAGTATAAATGTGTGTGCACACGCGGGTGCACATGCTTTATTTTATTTATTTTAAACTGTAATAAAAAACTATCATTTTAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa23727
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000040292 Nonsense 408 690 10 18
ENSDART00000139469 None None 99 None 2
Genomic Location (Zv9):
Chromosome 20 (position 29652037)
Other Location(s):
Assembly Chromosome Position
GRCz10 20 29723250
GRCz11 20 29626129
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGAAGATGTCAGTGGATTACATCTCATTCTCTGCTCATACAGACTACCAG[C/T]AGACCAGCGAGTTCATCCGAGCTCTGAAACCTCCTCATGTGGTCAGTGAT
Long Flanking Sequence:
TGTATTATATACTTCAATATGTGTTATGAGCAAAACACTTACATTTGTTTTATCAGTGCTAACAATAACAAGACCCATTCAGCAAAAAATGTAAGTTTCATAATTGTGTTTCAAAAACATATGTCTTCTCCTTCAGAGCATGGACCATTTCGATGACATCGGCCCAAGTGTAGTGATGGCATCTCCAGGTATGATGCAGAGTGGCCTCTCCAGAGAGCTGTTTGAGAGCTGGTGCACAGACAAGAGGAACGGCGTCATCATAGCGGGTTACTGTGTGGAAGGAACACTCGCAAAGGTGAATCAGCTCAATCTTCCACAAAACCTGTCCCCAGAGTTCAGCATTATCTTTTTGAGCATGACTGACCTGTTCTGACCTCACCCTGTTTTCCGTGCAGCATATCATGTCTGAGCCTGAGGAGATCACCACCATGTCTGGACAGAAGCTTCCGCTGAAGATGTCAGTGGATTACATCTCATTCTCTGCTCATACAGACTACCAG[C/T]AGACCAGCGAGTTCATCCGAGCTCTGAAACCTCCTCATGTGGTCAGTGATGATGATGATGATGATGATGATGATGTCCTGAGATGGTCATCAGGTTCTGGATCAGGTGTCATGTTGTTGTTGTTTTCAGATTTTGGTTCATGGAGAGCAGAATGAAATGGCTCGGTTGAAGGCTGCGCTGATCCGAGAGTATGAGGACAATGATGAGGTTCACATTGAGGTGCACAATCCTCGAAACACAGAGGCTGTCACACTCAACTTCAGAGGAGAGAAACTGGCCAAGGTGAGACTGCGCTGTTGCTTGTCCATGTCTACCTACCTAGGTTTATTGTCAGTGTTACATCCACATTTAGATACATTTAATATAGTGGTGCCTCACTCTGATTTTACCAAGGTTGAATGATTAGGTTCAGCTTGATAGGATGCTTTTAATTTTTCACTCCACCATGGTTAATTAGTTAACTACAAACTCCCCTGCCAGGTAAAATGGATAATCTAGTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa11209
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > G
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000040292 Essential Splice Site 603 690 15 18
ENSDART00000139469 None None 99 None 2
Genomic Location (Zv9):
Chromosome 20 (position 29649030)
Other Location(s):
Assembly Chromosome Position
GRCz10 20 29720243
GRCz11 20 29623122
KASP Assay ID:
2261-4472.1 (used for ordering genotyping assays)
KASP Sequence:
GTCACCACAGTGGTTCTGGAAGTGCAGTCAAAYCCCAAAGCTCAGAAAGG[T/G]GCATTTTTACACCAGATTAAATGTGCAACTGAAATCGTTTATTCAATATG
Long Flanking Sequence:
ACAAATGGTGTGTGTTTGCTTCTGTGCTGTTGTTTTTAAATATTGCAGATTACACTGATCTTGCCATGAGCACGGTGAAACAGACTCAAGCCATTCCCTTCACTGGCCCTTTTCCCTTGCTGTTGAGTCAGTTACGTCACCTGACAGGTGTGTATACCTCTGTGTGTGTTTTATATGTGGTGTTTGTTGTGTTGTGTTTACATGTCATGTTCACTATGTGTGTATTACAGGTGATGTAGAGGAGATTGAGATGTCAGAGAAGAGCACAGTGAAAGTCTTTAACAGCATCACAGTGATTCATGAGAACAACTTGGTGGTTTTGGAGGTGAGTACACTCACCTGTCATTAATACGCCAAACGTTACTATAGCAACTGAACTGACGTGCGTGTGTTTGTGTTTTCGTCCTCCAGTGGTTTGCCAATCCTCTGAATGACATGTACGCCGATGCCGTCACCACAGTGGTTCTGGAAGTGCAGTCAAACCCCAAAGCTCAGAAAGG[T/G]GCATTTTTACACCAGATTAAATGTGCAACTGAAATCGTTTATTCAATATGTCTGCTTATTTCCTCCTCTTATCTTTCATTATAGGCTATATTTCGGTCATATCTTTGTTTACTCTTTCTGTCCATTTTCATTATTCTTCCTTTCTCTATTGTTCTCTTTTTCTGTTTGTTTATTCATTCCCTCTGGTACTGATGTTAATTATTTTTTGCATTATTTTGATTCCCTTTTAGTTAATTTCTCTCTTGCTTCCTTTAGTTTTTCTTTTGTCCCTTCATTGTTGTCTTTTTCCATTTATTTTCCTTCCTTGCTTGCTTTTCTTTTTTTCCTTTCTCTTACTTCCTTTTTTGCATATCACTCCTTTTATTTCTTCCATTGTTTTTTCGTCAATCCTCTTCCCCACTTCCTTATTTGTCTACTAATGACATATTTTTGCATTTCTCCTTCATCGTATTTTCTTTCTCCCTTCCTTGCTTTTCTGTTTCCTTGTTTAGATTAGTTCA
Associated Phenotype:
Not determined