ZMP

si:dkey-27a13.1

Ensembl ID:

ENSDARG00000093421

ZFIN IDs:

ZDB-GENE-041111-169, ZDB-GENE-060503-351

Description:

Novel protein [Source:UniProtKB/TrEMBL;Acc:A3KQE6]

Human Orthologues:

COL13A1, COL23A1, COL25A1

Human Descriptions:

collagen, type XIII, alpha 1 [Source:HGNC Symbol;Acc:2190]
collagen, type XXIII, alpha 1 [Source:HGNC Symbol;Acc:22990]
collagen, type XXV, alpha 1 [Source:HGNC Symbol;Acc:18603]

Mouse Orthologues:

Col13a1, Col23a1, Col25a1

Mouse Descriptions:

collagen, type XIII, alpha 1 Gene [Source:MGI Symbol;Acc:MGI:1277201]
collagen, type XXIII, alpha 1 Gene [Source:MGI Symbol;Acc:MGI:2653243]
collagen, type XXV, alpha 1 Gene [Source:MGI Symbol;Acc:MGI:1924268]

Alleles

There are 2 alleles of this gene:

Allele Name	Consequence	Status	Availability
sa8492	Essential Splice Site	Mutation detected in F1 DNA	Not yet available
sa23577	Essential Splice Site	Available for shipment	Available now

Mutation Details

Allele Name:

sa8492

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

T > C

Consequence:

Essential Splice Site

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000136775	Essential Splice Site	99	151	None	7

The following genes are also affected by this mutation:

ENSDARG00000009194

Genomic Location (Zv9):

Chromosome 19 (position 40084696)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	19	38948679
GRCz11	19	38535799

KASP Assay ID:

2261-3594.1 (used for ordering genotyping assays)

KASP Sequence:

TCAAAAGGGAGAGAAGGGAGATCCTGGTGTTGGGCAGAAAGGAGAGCAGG[T/C]GAATGTGATGGACTGATTTCTCATTGACATCCAGCACACATCATTAAAAA

Long Flanking Sequence:

AGTTAAATCAGCTGTTTTGAATGAATCGTTTGAATGGATCATTTTTATTTATACCAATACAAAGTAGATGATAAAGGTTCACACACACACAGTTTTGATGATAGCAACTTCCTGTGTATTGTGACAATTACAACACATCTCAGTGTTCATTTCAAGAGGGTCAAGGAAATAAAAATGAAATTTACTGTTTGAGGGATTTTCCCTATCTCTCTCATGCATGGTGTTTATTTCTTAGGGGGAGGCAGGGGTCGATGGAGCCAAAGGTGAAAAGGTCAGTCGTCCCACGTTTTGGTCAAAAAGACTACTTTACTTAAATTGCAACTTAATTTTGCAAGTTCTCTCAAAGTCGTGCTTTTAAAAGTCTTCTCATATAATTTTTTTGTCTTAGGGTGAACCATGTTCCGGCTGTCCATCCAATGGACTAAATCCAGCAGGCATTTTGAAGCAGACTCAAAAGGGAGAGAAGGGAGATCCTGGTGTTGGGCAGAAAGGAGAGCAGG[T/C]GAATGTGATGGACTGATTTCTCATTGACATCCAGCACACATCATTAAAAAAAAAAACATCCACATCACTTTTTCCCACAAGTTCTGAAGTGCAGAAAATTACAGCGCAAACAGTTCTTGATTTCCACTTCAGCAGCTGCGTCTGTGAGCGTGCAGGGATGCATATATTGGCTCATGCATAATCGCAGATACTGTAAGACTGATCTGTATAACCACGCATTTGGCTCAGAAATAAGCCTCAGGCACAGATGCTTTTAGAAATTGTTTGTAATGACAGATTGGGGAATTAATAAGCCAAGGCTTTCATTTTTATGTTTGTTGAACAAGAAAATGTGCACTGATTATGGGTGTAAATTTAAATGTCATTTTTTGGTTTGGGTAAATGTCATTTTGACCTTAGTGTACATGATAAATACAGTGTTGTTTTAACCGTCATTCGCTGGGAATTTTATTTAAAAGTTCCAGTTTTATATATTTTTATTTGAATCAATAGAAATTGAG

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa23577

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC

Mutation:

T > A

Consequence:

Essential Splice Site

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000136775	Essential Splice Site	118	151	None	7

Genomic Location (Zv9):

Chromosome 19 (position 40022843)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	19	38886826
GRCz11	19	38473946

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

TCCCCAACATTCAGTCATCTTTAAAGCAAACGGCATCTCTGATCCTCTGC[T/A]GCGTCAGCCAGTCTGATGCTTTTACACTTTGCACTTTATCCTCTCATTGT

Long Flanking Sequence:

TAAAATAGGCTAAGACTACCATTAGGCATAGATGCAGTTGCCCTAATAAATTATGTTAATTATTCAAAATGAACTCCCCAAAGGGCTTGTGTTGTACATATTCATATTTATATGTAATGGCTTTTTGTACTTAAAAAATTGACATCGGCATGGCAGCCCTTTCTATTGTTGTTTTATATTTTGGAACAATGTTGTAAGCTCGGTTGCTTTGTAAAGGTAGGTTTATATGCGATTTGCAATTTGGGATGGAATGAGATTTTATTTTTGTAAGACTTTTTTTTCATCGACACCAATCTCTTGATGAGCTCTGTGACGACATCTCCTCCTCCACCACTCTGGACTCTTAAACTTGAATTGACATTTGATATACTGTACCACTTGCAGCTGAACCATCGTGTGCTTCTAGAATATCTCAAATATGCTTTGCTAGTCATCCTAAAACACAGCAGATCCCCAACATTCAGTCATCTTTAAAGCAAACGGCATCTCTGATCCTCTGC[T/A]GCGTCAGCCAGTCTGATGCTTTTACACTTTGCACTTTATCCTCTCATTGTCACTCCCTCGGTCTGTATGTGTGTGTGTGAGTGTGCGCAAGGATGGAGAGAATGAATCTCAATCTGTATTAGGAGGATAGCTGAAAAGTTTTACGCAGAGCCATTTACAATTGTCAAATTATGCAGCTTTCATGAACGTTACGAGCATGCCGATTTCAGATTGGCTTTCAATCTTTTAACATTCCAATTTTTAAAGAATCTCCCCCCCATCGTCATGCATCTCACCACAGCGCTTTTATAAATAAAGTCATTTGTGTGCAAATTCTGTTTGAAGAAACTTAAGAGAACCAATAAAGGTTTTGAAAGCAAAGTCCTACTGGCTTGTTCTCTTGCTGGTCTCTCAACTCCAAATCTTCAGTTTGTAACAATAATGAAATTTTGCTTTCATAATGGATGAACGAACTGAAATACTTGAAATGGCATTAATGGTATGGAGTTTACAGATGTGAA

Associated Phenotype:

Not determined