ZMP

cpsf1

Ensembl ID:

ENSDARG00000034178

ZFIN ID:

ZDB-GENE-040709-2

Description:

cleavage and polyadenylation specificity factor subunit 1 [Source:RefSeq peptide;Acc:NP_001108153]

Human Orthologue:

CPSF1

Human Description:

cleavage and polyadenylation specific factor 1, 160kDa [Source:HGNC Symbol;Acc:2324]

Mouse Orthologue:

Cpsf1

Mouse Description:

cleavage and polyadenylation specific factor 1 Gene [Source:MGI Symbol;Acc:MGI:2679722]

Alleles

There are 6 alleles of this gene:

Allele Name	Consequence	Status	Availability
sa23476	Essential Splice Site	Available for shipment	Available now
sa16124	Essential Splice Site	Available for shipment	Available now

Mutation Details

Allele Name:

sa23476

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC

Mutation:

T > C

Consequence:

Essential Splice Site

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000024861	None	None	985	None	24
ENSDART00000045987	Essential Splice Site	180	416	6	12
ENSDART00000110017	Essential Splice Site	180	1451	5	37
ENSDART00000110513	None	None	400	None	15

Genomic Location (Zv9):

Chromosome 19 (position 12567461)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	19	12025807
GRCz11	19	11944149

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

TCAGGAAGGACACGCTTGCTGACGAACAGGAGGGGATTGTGGGAGAGGGG[T/C]GAGAATAAATGTTTTCTAAATACTTGAAGACATTTCTTTTTTATTATTAT

Long Flanking Sequence:

CCACTTATTTAAATGTCTTTCTGTTCCCTTGTGTTATTCATGAGCTCCTTTAAACTACAAAAAGTTCCTTGTGTGTTTGTTCACACTTGGCGAATAATGCTCGTTCCAATTCTGTTATAATATCGAATGTCTAATATTTCTGCTATTTTGTGTCTTTCAGCTGTCAGTAGTGGAGTATGACCCTGGCACGCATGATCTCAAGACTCTGTCGCTGCATTATTTTGAGGAACCGGAGTTGAGAGTGTGTATTGTGGTTATGAGGAAGTGTTGTACTGCTGTTTTGTGGAGATTTGTGTGAGTTTTTGTGTTTGAATTGTGAAGAATTGTGTTTTTTTTGTATGTTATAGGATGGGTTTGTTCAGAATGTGCACATTCCTATGGTTCGAGTGGATCCAGAGAATCGATGTGCTGTCATGCTGGTGTACGGCACTTGCCTGGTGGTTCTGCCTTTCAGGAAGGACACGCTTGCTGACGAACAGGAGGGGATTGTGGGAGAGGGG[T/C]GAGAATAAATGTTTTCTAAATACTTGAAGACATTTCTTTTTTATTATTATTATTTAAAGACTTTTATGTTAAAAATAATAATATTGTGAAATAATGTTGATGTCGAAGCTGAATTTTAAACTCCAGATTTTAATGTCAAATGATCCTTCAGAAATTATTCTGTTATGCTGATTTCATGCTCAAAAGCATCAGTTATCAGTGTTTTTTGTTTTGCATTTTTGATCATTTTAATTTTTATTAAAACAATATAAAACTCCAAACGAAAGCATTTCGCATATGAAAAAGCATATAGCATATAAAAAGCATTTTATAATATGAATATCTTTTTTTCCCCTCAAACAATCCATCTCATGAACACTATGATAGTAATTGTAAAACAAACATCGCTACTTTTTAGTCACATATACACTTATTTATTAAACAACATACTTTACATGCCAATTTGCACATAACAGCTGCAAATATAACGTTGTTTATAGTCATATACCTGTACATACACT

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa16124

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC
Order Allele From EZRC

Mutation:

T > C

Consequence:

Essential Splice Site

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000024861	Essential Splice Site	436	985	10	24
ENSDART00000045987	None	None	416	None	12
ENSDART00000110017	Essential Splice Site	902	1451	23	37
ENSDART00000110513	None	None	400	None	15

Genomic Location (Zv9):

Chromosome 19 (position 12541088)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	19	11999434
GRCz11	19	11917776

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

GTACGACCAGCARCAAGCTCARAGCAAYCTGAAAGTGCGCTTCAAGAAGG[T/C]ACARGCTGTATCAATAYTTACTCTCCTCAGGAWGTTTACTGTAATGGTAT

Long Flanking Sequence:

CTTATTTATTATTGTCTATTTAGTCACATAAAATTATAACCTAGTTACTTTTCACCACCTTGTATATCACTTGTTGTTTTTATCATTGTTCATTAAAACATTTATTGTAATTTCGAAATCAGATCTACCAGCTTCCAGACTGGCGTTTGGTTTTCCTGGTGAAAAATTTCCCAGTCGGTCAGCGTGTTTTGGTTGACAGCTCTGCCAGCCAGTCAGCTACTCAAGGGGAGCTTAAAAAAGAGGAAGTGACGAGGCAAGGTGACATTCCATTGGTCAAAGAGGTTGCTCTTGTGTCATTAGGCTACAACCACAGCCGTCCCTACCTTCTGGTGAGCTTAACACCGTTTTTGCTCTTCTAAATGAGATTGCGTTTTATCTTTCACTGAATCTGTCAATCAAATTCTTACAGGCTCATGTTGAACAAGAGCTTCTCATCTATGAGGCCTTTCCGTACGACCAGCAGCAAGCTCAAAGCAACCTGAAAGTGCGCTTCAAGAAGG[T/C]ACAAGCTGTATCAATATTTACTCTCCTCAGGATGTTTACTGTAATGGTATTTGAATGATGAGGAGGTTTTTATTTTTCTTCATATCAGATGCCTCATAACATTAACTACAGAGAGAAGAAGGTCAAAGTGAGGAAGGACAAGAAGCCTGAGGGTCAGGGAGAGGACACTCTCGGCGTCAAAGGTCGTGTGGCCAGATTCAGATACTTCCAGGACATCTCTGGATACTCAGGGGTACGTCTGTCTGTGAATGTAATGCATATTTATGGTTATTTTATCTATTTTGAGCTATTTCAGCAGATTGAATCTAATAATAGTTTTAGTTTTGTCAACAATAACAAATCAAATTCAAGTTTTAAGAGTGTGCATATAACTTAAATTAAATGAGTTGTCTAAATATGCAGAAATTTCCATGTGTTTTACAAAATTCCTCCTTCAGATATAAGATTAATGGTTACACTGTAAGTTGCAAGAATAGTGGGATACATAGATGAACAATAAA

Associated Phenotype:

Not determined