ZMP

Q568T9_DANRE

Ensembl ID:

ENSDARG00000004917

Description:

LOC553360 protein [Source:UniProtKB/TrEMBL;Acc:Q568T9]

Human Orthologue:

PCIF1

Human Description:

PDX1 C-terminal inhibiting factor 1 [Source:HGNC Symbol;Acc:16200]

Mouse Orthologue:

Pcif1

Mouse Description:

PDX1 C-terminal inhibiting factor 1 Gene [Source:MGI Symbol;Acc:MGI:2443858]

Alleles

There are 4 alleles of this gene:

Allele Name	Consequence	Status	Availability
sa40806	Nonsense	Mutation detected in F1 DNA	Not yet available
sa2316	Nonsense	F2 line generated	Not yet available

Mutation Details

Allele Name:

sa40806

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

C > T

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000009197	Nonsense	162	721	4	16
ENSDART00000051904	Nonsense	162	287	5	8

Genomic Location (Zv9):

Chromosome 6 (position 55625914)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	6	55335882
GRCz11	6	55345695

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

CCAGTACACCAGGAGTAAAACCTTGGGTTAACACCACCACAGATGAGAAA[C/T]AAGGCCAGGCCAGTACGCCTGCACCTGCACCGTACCGGCCCTCTGTGTGA

Long Flanking Sequence:

GCCCTAACAGCTTCAAGAGGCCAAAGGTCAGTGTCCTTCAAAATAGCAGAAATAAATATGAAGTACCATGCCTATTTGATATTAAACCCTTGTACTGTTGGTGATGTTTTCATCCAATCTTACATCTTAATTTGGCCACAACTTTCTCTGTGTTTTAAGCAAATGGAATGATTTTAGGTGACCAACCTTATTTTGACACGTATTTTGGAAAAATGCTTCGAAGATTAAAAAACTGGGCGAATTTACAATTCTTTCATTATGTTGGTGGCTGTTTTCAATAAATGTCTTTATAATGGAAGTGAATGGGGCAAAAACAACCCCAAACATAACGAAAGGGTAGTTGATTTAAGGGTTAAAAGAACATAGTGTAGTGAACAATGTTTCTGAATTCGTTTTGATTTCAGGTTGAGATTCCAGCCACTCCAACAACTCCCACTGTCCCCATTTCTCCCAGTACACCAGGAGTAAAACCTTGGGTTAACACCACCACAGATGAGAAA[C/T]AAGGCCAGGCCAGTACGCCTGCACCTGCACCGTACCGGCCCTCTGTGTGAGTATAGACTCCGTTTGTTCCTATACAGTGGGTTACATCCCACGTAGCACTTGATTAGGTTGCATTCCTGATTCTAGACTTTTTTTTAAAGACATGTTAAAGTTGTTGTCATTTCTATCAGACTCTGTTCGATAATAGAGTGTCTGAGAAAAACAGTGTTGTAGTTCACTGTCTACAGTTAAATAAGATGGTTTCATCCTTAAGTTACACAATGTTGATGCTATTTTGTAAGACTAATGTGCAAAAAGAAATGATAAACATAATTTCACAGTTTTGTTTTCAATTAGTGAGTCAGGATATTACTAACACATTAGCAGTGAATTACTGGTACAAGCTATATATATATATATATATATATATATATATATATATATATATATTTATTTATATTTATATATATATATATATATATATATATATATATTGTTAATCCTTTATTCTATCAGTAGCC

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa2316

Status:

F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

A > T

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000009197	Nonsense	249	721	6	16
ENSDART00000051904	Nonsense	249	287	7	8

Genomic Location (Zv9):

Chromosome 6 (position 55629955)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	6	55331841
GRCz11	6	55341654

KASP Assay ID:

554-3204.1 (used for ordering genotyping assays)

KASP Sequence:

CCCCACGGGAATCCTTCAACCGCTGGCTTCTGGAGAGGAAAGTAGTGGAT[A/T]AAGGTCTGGATCCTCTCCTGCCCAGTGAATGTGACCCAGTCATCTCTCCG

Long Flanking Sequence:

TATGACTGATAAATTTACAATTGGTGTACTGTACAAACAGAAATACAGTCGGGCCGAGGATAGTGAGCAGAATGTAAGTTAACTTTACAGGTAGCGAGCGCAGAATTTCTCAGTGAATCACTTAACAGTGTTTAACTATAACATGACATCTGTTAATGTTTCTGTTTTATGTGAGTCCCACAGAAGCATAGAGACTCCCGGAACTTCCGGGAAACTTGGGATGTCTAAATATCACGTTTAATAACTATAGTTAGATGAGATCCAGCGGTACATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGGCACATCATTCATAAACACACACACATGTTAATTATTAGTAATTCTGTAATTTGTCTGGCTGTATTTAGGCATCGAGCCCCCACGGGAATCCTTCAACCGCTGGCTTCTGGAGAGGAAAGTAGTGGAT[A/T]AAGGTCTGGATCCTCTCCTGCCCAGTGAATGTGACCCAGTCATCTCTCCGTCCATGTTTAGAGAGATCATGAATGATATCCCCATCAGGTAGTCTACCATCAAATGTTTAAATCAGTTACTTTATTAAAACAAGTTTTTGATCAAATATTCCAATATTGATTACATTTTTCCCCTTCGATTTTTAGGCTCTCTCGCATCAAATATAAAGAAGAGGCCAGAAAACTCCTGTTCAAATATGCAGAGGCGGCCAAGAAAATGATCGACTCCAGGTAAATGTTCTCATCGCTTTACTAGGCATGGGAAGATAAGGCATGGGACGTTTCTAGGTTTACTGCGGTTTGGAGTCAGGTTTTAAAACTGCAAAAATTTTCTGTTGTACTGTTCCTGCGGTATATGTACATTTTTAGTAGTTTTTTACAACAATTTTATTTAGTTTTTTAGAGCAACAATATATTAAATTATAGTCTTTTAGGGCAAGAAATCTGTCCCTTTTTTTTTT

Associated Phenotype:

Not determined