Busch Lab

ZMP

polr1a

Ensembl ID:
ENSDARG00000029172
ZFIN ID:
ZDB-GENE-030131-5286
Description:
DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:Q7SXQ2]
Human Orthologue:
POLR1A
Human Description:
polymerase (RNA) I polypeptide A, 194kDa [Source:HGNC Symbol;Acc:17264]
Mouse Orthologue:
Polr1a
Mouse Description:
polymerase (RNA) I polypeptide A Gene [Source:MGI Symbol;Acc:MGI:1096397]

Alleles

There are 10 alleles of this gene:

Allele Name Consequence Status Availability
sa45512 Nonsense Mutation detected in F1 DNA Not yet available
sa12570 Nonsense Available for shipment Available now
sa2745 Essential Splice Site F2 line generated Not yet available
sa22458 Essential Splice Site Available for shipment Available now
sa22459 Nonsense Available for shipment Available now
sa1376 Nonsense Available for shipment Available now
sa22460 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa45512
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000044708 Nonsense 97 810 3 17
ENSDART00000114501 Nonsense 97 1710 3 36
ENSDART00000123326 Nonsense 97 1684 3 34
Genomic Location (Zv9):
Chromosome 14 (position 20098061)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 15862796
GRCz11 14 16168359
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AAACGTTATCGTATCACTCACTCCTAATTGTTTTTGTTGCAGAAATTATA[T/A]TTACTCATCCGGGGTTCATGCCTGTCATGTCACATACTGAAGTGTCCAAG
Long Flanking Sequence:
CTAATTAGGACAATCAGATCCAGAAACAATTTTGTTGCCAATTGTCAGTAGAAAAGAAGCCAAATAACTTTGCTCTTAATTACCGCCAATCAACATTGCTCAAAATTGTTTTGTGTATCATCAGCATTACTTTAGTTAATTGGAGATATAAGTAGTTTTACTTGCATATCGAATTTCTAGTGTTTATTGAAATCATCAATTGTTTTAGTGGACACTGTTTTTCTGCTGTTGTTGCTTACTGTACTGTAAAAATCGAAAAATGGGGCATTCATTGTCTGGTGGGTTTCTGCTAATGACACCTTGCTTAAGTAGTGTATAATATTTTTTTGTATACTTGTTTATTTAGATGCATTTATTTAGATGTGGTGAAAAATGTCTTGGTTTAGACCCTTGCAACATAGTCTTTTAAAGATTTGTGATAAGATTGTGGATCTTGATCCAGCCTAAACAAAACGTTATCGTATCACTCACTCCTAATTGTTTTTGTTGCAGAAATTATA[T/A]TTACTCATCCGGGGTTCATGCCTGTCATGTCACATACTGAAGTGTCCAAGAGCAGCTATTCATTTACTGCTGTGCCAGCTGAAGCTCCTGGACGTGGGGGCCATGAAGGAGGTGTTTGAGATTGAAAACGTTCTCAATCAGGTCAGAAATTCCCAACAGTCTCGCGTCATTAAAGGAAAAAGGCATCATTAATTAGACTACAGTGCTTTTATATTGTGTTTTTGTTGTCTCTCTTAGTTTTTGGAATCCAACCCCAGCCCACCTGGAGAAGAAATCCAAGAAACTCTGAATGACTTTGTTAAACCCATCCTCGAAACCAGAAAAGACAAGCAACACACTGACCCTGTGAGTTTGAAACTCATCTGTTTTGTCTTTTATATTAATCATATTTGTATATATATTTTTACATCTTAAACATTTATGACTTCAGGTCAAGCACATCTGTGAGAAAAAGTCCAGTCTCATTACCAGTTTCTGGAGAATACATATGGGCCCAAAAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa12570
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000044708 Nonsense 112 810 3 17
ENSDART00000114501 Nonsense 112 1710 3 36
ENSDART00000123326 Nonsense 112 1684 3 34
Genomic Location (Zv9):
Chromosome 14 (position 20098106)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 15862841
GRCz11 14 16168404
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TTATATTTACTCATCCGGGGTTCATGCCTGTCATGTCACATACTGAAGTG[T/A]CCAAGAGCAGCTATTCAYTTACTGCTGTGCCAGCTGAAGCTCCTGGACGT
Long Flanking Sequence:
CAGTAGAAAAGAAGCCAAATAACTTTGCTCTTAATTACCGCCAATCAACATTGCTCAAAATTGTTTTGTGTATCATCAGCATTACTTTAGTTAATTGGAGATATAAGTAGTTTTACTTGCATATCGAATTTCTAGTGTTTATTGAAATCATCAATTGTTTTAGTGGACACTGTTTTTCTGCTGTTGTTGCTTACTGTACTGTAAAAATCGAAAAATGGGGCATTCATTGTCTGGTGGGTTTCTGCTAATGACACCTTGCTTAAGTAGTGTATAATATTTTTTTGTATACTTGTTTATTTAGATGCATTTATTTAGATGTGGTGAAAAATGTCTTGGTTTAGACCCTTGCAACATAGTCTTTTAAAGATTTGTGATAAGATTGTGGATCTTGATCCAGCCTAAACAAAACGTTATCGTATCACTCACTCCTAATTGTTTTTGTTGCAGAAATTATATTTACTCATCCGGGGTTCATGCCTGTCATGTCACATACTGAAGTG[T/A]CCAAGAGCAGCTATTCATTTACTGCTGTGCCAGCTGAAGCTCCTGGACGTGGGGGCCATGAAGGAGGTGTTTGAGATTGAAAACGTTCTCAATCAGGTCAGAAATTCCCAACAGTCTCGCGTCATTAAAGGAAAAAGGCATCATTAATTAGACTACAGTGCTTTTATATTGTGTTTTTGTTGTCTCTCTTAGTTTTTGGAATCCAACCCCAGCCCACCTGGAGAAGAAATCCAAGAAACTCTGAATGACTTTGTTAAACCCATCCTCGAAACCAGAAAAGACAAGCAACACACTGACCCTGTGAGTTTGAAACTCATCTGTTTTGTCTTTTATATTAATCATATTTGTATATATATTTTTACATCTTAAACATTTATGACTTCAGGTCAAGCACATCTGTGAGAAAAAGTCCAGTCTCATTACCAGTTTCTGGAGAATACATATGGGCCCAAAAAAATGCCAGAATTGCAAGTAAGCTGATCTTTTCCTTCATCTTAGAG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa2745
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000044708 Essential Splice Site 264 810 7 17
ENSDART00000114501 Essential Splice Site 276 1710 8 36
ENSDART00000123326 Essential Splice Site 264 1684 7 34
Genomic Location (Zv9):
Chromosome 14 (position 20102256)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 15866991
GRCz11 14 16172554
KASP Assay ID:
554-2769.1 (used for ordering genotyping assays)
KASP Sequence:
GACTCCGAGTGTGGCACGAGAACACATCATCAAACTTTGGGAGACAGAAG[G/A]TAGGATTGATTGAGTTTATTTATCATTTCTTTTTGGTTTTACAGTGCAAA
Long Flanking Sequence:
GGTGCAGCTTCCAATCCTCGTCGATGTAGAGCAAAGTAAGGCTTAAGAATGAGTCCATCTTCCTACTTGACCAGAGATCAGATAGAAATCAGCCACAGCTTTTAACAGAGCGCTGTCACGTGATATGTAGGGAACGTAATTGAAAAAAATCAACCTGGAAAAATTAGATCGATTACAAGTTCGGATGATTTCAATTACTTTTCAATTAATCGCCCAGCCCTAGTGGAGTGTTTTTTTTAAATATGTATATACAAGAGACTTTTGTGACAGTGAAGTTGAATTCAGACTAGTATAGTGCATAAAATCTCATGCATAATGGGATCCTGTGATTTTTATTTTTTAATTATTATTATTTTTTTAAATTGAGATCTTTAGGAGTTGGCGTTTGTAAACATCTATTCATTTACCATTGCTTTCAGATGATTCCCAATTGACCAAACGTATATTCCTGACTCCGAGTGTGGCACGAGAACACATCATCAAACTTTGGGAGACAGAAG[G/A]TAGGATTGATTGAGTTTATTTATCATTTCTTTTTGGTTTTACAGTGCAAATGTAATAGGTTTTCTGAAATAATTCATTATGACTTTCAGGTTTTTTCCTGAAGCATTTGTTCTCAGGGTTTGACATGGACAACTCTGATAATGGCTTTAATCCTGAAGTTTTTTTCTTGGAGCTGCTGGTGGTTCCTCCATGCAGGTCAGCTTTTCAGTGTTTGTACTAGGGCTGCACAATGTATAATTTTAGCATTAAAATTGGATTTTACAATGTTTTTTTTAGTATTTTTCAAATGTTAAGTTGTATTTCTAGCTGAGCAGGAGCTACAGCACATAAGAGTTGTGGAGTCACTGCAGAGTTTAACCAGAATACAGTGAAAGTTTATTATGTGCATGTGTTTTTAAAGCCTGGGTGAGCATTCAGATACAAGAAACTTTAACTTTTATTATACTCCTTTAAGCAATGAAAACTAAGCAGTGTTTTTTTTTTTTACATTTGATTAATCA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa22458
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
T > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000044708 Essential Splice Site 530 810 12 17
ENSDART00000114501 Essential Splice Site 542 1710 13 36
ENSDART00000123326 Essential Splice Site 521 1684 12 34
Genomic Location (Zv9):
Chromosome 14 (position 20110197)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 15874932
GRCz11 14 16180495
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ACAACTCCTGACACCCAGCACTGGCCAGCACAGGATACCCATGAAAATTG[T/A]GAGTCGGTTATCTTTGACAGAAACACACTGTTTTTGACATACATTTCAGT
Long Flanking Sequence:
AATACCAATTGAACTTAAGTCTAGTCTCGTAAATGCATGTGTGGACCTGCACCTGTGCCTTGATATACGCCCCTTCCATGTTCTTTCAGCCCCTTCCATTTCAGCTGATCCGCGTATCTCTAATACACATTGACATATTTTGGAGGAGGCATGAAACTAGCTTCCCATTGTCTGCACTGAAATATCAAATTACAAAAGTATTTGATTGTGATTTTTGCTGTTTTGTTTAATTGTTTTTTTTTTTTATTATTTATTATTATGGTTCCTCTAGGTTTTTGCTACCAAGTTGACATATCCTCAACCTGTGACACCCTGGAACGTAAAGGAAATGAGGCAGGCAGTGCTGAATGGACCCAACATCCACCCTGGAGCCACCATGGTTGTTAATGAAGACGGGTCCCGCACTATTCTCAGCAGTACCAATCAGACCCAAAGAGAAGCTGTCGCCAAACAACTCCTGACACCCAGCACTGGCCAGCACAGGATACCCATGAAAATTG[T/A]GAGTCGGTTATCTTTGACAGAAACACACTGTTTTTGACATACATTTCAGTGTCACTACTTTTCTCAATATCTGTGCCGTTTGTTAACAAATCTAATATCTTTAAACCCCTTTGCACTTATTTTTACCTAATTATCCCAACGACTCCCTTATGATTTGTTCAGTGATTCAATTGTTCCCAAACTTCTCCTTAGCACAATGCTAATCTGCTGTGATTGGTCCGATGACCCAGTCTGTTGTGATTGGTCAACCGGTTTCAACACGATTCAGAGAAACGCCTATCATGGCTATGAAGTAGCAAAGAGTGTGTGAGAACCCAATACAGATATACATTAAAGCAATTCAGTTAAACACCACCATATTACTCTACTCATAACCCTAACCCCAAGTAATAACAACGACACACATTCAGTATTAATCCACACAGTGGCAAAGTTGAACTATGTTGAAAATTGACAGCACCATGCATGTGAGGAACAGCTGATGGTTGCCATAGCAAAGA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa22459
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000044708 Nonsense 781 810 16 17
ENSDART00000114501 Nonsense 793 1710 17 36
ENSDART00000123326 Nonsense 772 1684 16 34
Genomic Location (Zv9):
Chromosome 14 (position 20115244)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 15879979
GRCz11 14 16185542
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GAGACTAGTGGGAAACTGCTTAGCTGTCTGGCACGGCTCTTCACTGCCTA[T/A]CTGCAGCTTTACCGCGGGTTTACTTTGGGTAAATCCACATCGATGCCAAC
Long Flanking Sequence:
CCAAACAAACCACGCCAAAAGGAAAAATGAACTCTAGTGCGATTCTACCGAACAAGATAAGGCAGATGTGAAAACCCTTTGACACCTTTTTCATCCAAGTTTTCCCCAGAGATTTTCAGTCAGGTTTTAATTGAGACTTTAGGCTAGCCATTTTAATATATTCAGCTTCAAAGAATGGTTTTACTCTATTTGCTGTGTGACAGTGGACGATTCCCTGCATAAAATTAATTAATTAGTATCCGATTGACTTCTTAGTTTGCATACTACAGCTTAAAAGACTTGCCTGTAGCAGTTTATCTTGACTGTTCCCTGGTATTATTGATTCTTATATGCTCTGTTTGTCAGGTGGTCATTCGTCAGGGAGAGCTCTTGATGGGGGTTCTGGATAAAGCTCACTATGGGAGCTCAGCGTATGGTCTGGTCCACTGCTGCTATGAACTCTATGGAGGAGAGACTAGTGGGAAACTGCTTAGCTGTCTGGCACGGCTCTTCACTGCCTA[T/A]CTGCAGCTTTACCGCGGGTTTACTTTGGGTAAATCCACATCGATGCCAACCCATCTTGTTAAACAGAGAGCTGTAAAATTATTTTGTATTAATCTGTCATTTGTGTCTGATAGGTGTGGAGGACATTCTTGTAAAGGATGGAGCCAACAAACAAAGAAAAAAAATCATCAAAAAGTCAGTCACATGTGGCTCCAAGGTGAATTACTCAGATCCAGCACTCACTCTTTGTGCCTTTTTGAAATATGTAAATCAGTGTTTTGAAAAATGAGTAGTTCTTTTAAATAATGAAATGTATATTAACTTTCAGAAATATGTGCTCAATCTGCTCAAATTGATGAAATTTTGCTAGAAATTTTATTAATATATTACTAATTGTAATATTACTACAGAATGGTTGTTGACACATTGTCATTTTAAACAAAAACTAAAAAAACTAAATTTGTAAATTATGGATAATTTATGCACCTATCTGGTCTAGATCTTATTTGTGTAATGTTTTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa1376
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000044708 None None 810 None 17
ENSDART00000114501 Nonsense 1487 1710 32 36
ENSDART00000123326 Nonsense 1461 1684 30 34
Genomic Location (Zv9):
Chromosome 14 (position 20133691)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 15898426
GRCz11 14 16203989
KASP Assay ID:
554-1288.1 (used for ordering genotyping assays)
KASP Sequence:
CTACTGAGAGCCAACAGAGAGTTAACTCTGAACAGCCGAAGGGAAGCTCA[C/T]AGGGCTCAGTGAGGATCAACTCTGTGCTGCAGTTAAGCGCTGCTATTGAG
Long Flanking Sequence:
TTACAACCAAGATATGACCCTATTTCATGTATAATATGGGCTCTTTAAAAATTCAGTACTGATTGGTATCAAATTCCAGTATTGTGACAAACACTATTGTTTTTCATAATATTTGTTTTATCTACTATGGATGTCAATTGTTAGCAGTTTCCACCATTTTCTAGAATATATTTTTTGTTTTTGAACAGAAAAAAAAGTTTGAAACCATTTAAGGTTAAAGTACAGTAAATGGTGAGATGTCGTCAATTTTTGTGTTATATAGTGTAATCCTTCTATATTTTATTTCAGACATGTACATTTTATAGCACAAGAGCTAGTAAAGTTGTATTGTCTGTGCTGTGATTCCTCAGGTAGACTATGAGAGCGAGGAGGGAGAGGAAGGCAGTGATCAGGAGCAGGAGGAAGTGGCTGAGGAACAGGAGGCGTCTCAGGAGGTCTCTGAGGAAGGGTCTACTGAGAGCCAACAGAGAGTTAACTCTGAACAGCCGAAGGGAAGCTCA[C/T]AGGGCTCAGTGAGGATCAACTCTGTGCTGCAGTTAAGCGCTGCTATTGAGGACTACAAATATGACACCAAAAAAGGACTGTGGTGTGAGGTGTGTATAAATAAATTGATCTTCATTTAGGGTCGTTGTTATTGAAACATTTCAGAGTCTTTGAGAGTGCATTGGATGGATTTGTAATAGTTTTTTTTAATGCTGTAGTCTTCCAGTATCAATTAGTTATATGTAGTATCAGTGTTTACCAGACCAGCAGTGTTCGGTAGAGTTACTTTTAAAAGTAATGCATTACAATGTTGAGTCACTCCCCAAAGAAGTATCTAGTTAAGTTACTTAGTTACTTTTTATGGTAAGTAATGCTTTAACTTACTTTTGAGTTATTTTTGCGTTGCGAACTTGTTTTTTTTTTCTGTTTTAATTAAAGGAGCTCTGCGATTAACAACGCACTGTATAACCTACACCTATTTACCTTAAAAAACACATTAAAATATATATTTTAGAATAATG
Associated Phenotype:
This allele has been associated with this phenotype by genetic linkage analysis and may not be causal.
See FAQs for more info.
Control on top; Mutant below; 48 hpf
Control on top; Mutant below; 48 hpf
Control; 48 hpf
Control; 48 hpf
Mutant; 48 hpf
Mutant; 48 hpf
Stage Entity Quality Tag
Hatching:Long-pec
ZFS:0000033
blood
ZFA:0000007
quality
PATO:0000001
abnormal
PATO:0000460
Hatching:Long-pec
ZFS:0000033
brain
ZFA:0000008
quality
PATO:0000001
abnormal
PATO:0000460
Hatching:Long-pec
ZFS:0000033
extension
ZFA:0000106
decreased size
PATO:0000587
abnormal
PATO:0000460
Hatching:Long-pec
ZFS:0000033
eye
ZFA:0000107
decreased size
PATO:0000587
abnormal
PATO:0000460
Hatching:Long-pec
ZFS:0000033
hindbrain
ZFA:0000029
hydrocephalic
PATO:0001853
abnormal
PATO:0000460
Hatching:Long-pec
ZFS:0000033
inner ear
ZFA:0000217
decreased size
PATO:0000587
abnormal
PATO:0000460
Hatching:Long-pec
ZFS:0000033
melanocyte
ZFA:0009091
quality
PATO:0000001
abnormal
PATO:0000460

Mutation Details

Allele Name:
sa22460
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000044708 None None 810 None 17
ENSDART00000114501 Nonsense 1537 1710 33 36
ENSDART00000123326 Nonsense 1511 1684 31 34
Genomic Location (Zv9):
Chromosome 14 (position 20137672)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 15902407
GRCz11 14 16207970
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TCATGCCGATCACTAAAGTGCACTTTGACCTCACCTCAGTGGTGGTGAAA[C/T]AGGCTCAGAACGCGGTCATCATGGAGACCAAGGGCATCACGCGCTGTTTG
Long Flanking Sequence:
AATCAAAGCAGCAAATTACACTGAAGAATGAAAACTCCATCACATTAAAAGATTGCATTCTTAAGTACTTTTTATGAATTATTATCTATTACTTAACATTATTATGTTTTGTGTATTACATGCTTGCCAACAATTATTTAAATGCTAACTAATGCAGTGCGTTACCACATTTGCCATATTACAGGACGTATATGTTGTATATAAATGACTGTAATAGACAGAGATATTTGCATAAATTCAAATTGCAGCTATATATAATGTATGTATATTTAGGTATGCATACTGATTATGTAAGTGTATGTGTGTGTGTGTCATTTGTGATAGTACCCATATTTAATCAAATTTGCAAATAAAAAATTCAAAGAAGAGTATCGGTATTTCTCAACAATTGATGGTAAACGTGTTGCTATTCATAATGCTTTGCTGTGTCTGTTTAACAGTTAACCCTGGTCATGCCGATCACTAAAGTGCACTTTGACCTCACCTCAGTGGTGGTGAAA[C/T]AGGCTCAGAACGCGGTCATCATGGAGACCAAGGGCATCACGCGCTGTTTGTTAAATGAAGTGACCAGAAAAGACGGAAGCAAAGAGATTATGCTCAACACAGAAGGCATCAACATTCATGAGATGTTCAAATATGCTGATGTAAGTCAAATACACCATATACAGGGCTTGACATTAACTTTTTTGTTCACCAGCCACTGTTCTAGTTGGGAAAATATGTTTTATATGCATAAATTTGACTTTAATGTACTAAAATGACTTGATTTAGATGGTGTGTTTTGTCCACATGCCTTCTCATTCACTTAACTTCTTGTGTGTATTGTGTATTAGCTTGCTCAGTGTGCATGAGCAAATGGGTTGTCGCAATGCAATCAGTTTTTATTTCTATTATTTATGACTTTTCAGGGCTCAAGATTAAGGATTTACTAAATTTTTCTCTGACCACACCAAATAAGTATTTCTAGCCACAATGTTTTATTGTGTCAAAACAAGGAAAATATC
Associated Phenotype:
Not determined