Busch Lab

ZMP

pcdh15a

Ensembl ID:
ENSDARG00000052232
ZFIN ID:
ZDB-GENE-030616-3
Description:
protocadherin 15a [Source:RefSeq peptide;Acc:NP_001012500]
Human Orthologue:
PCDH15
Human Description:
protocadherin-related 15 [Source:HGNC Symbol;Acc:14674]
Mouse Orthologue:
Pcdh15
Mouse Description:
protocadherin 15 Gene [Source:MGI Symbol;Acc:MGI:1891428]

Alleles

There are 11 alleles of this gene:

Allele Name Consequence Status Availability
sa13589 Nonsense Available for shipment Available now
sa22367 Nonsense Available for shipment Available now
sa1509 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa13589
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
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Mutation:
A > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000067058 Nonsense 1008 1796 23 35
ENSDART00000139931 Nonsense 523 1308 10 21
ENSDART00000143450 None None 297 None 9
Genomic Location (Zv9):
Chromosome 13 (position 41867326)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 41129378
GRCz11 13 41255268
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GACTGGTTATCACCAAAGTCAACCTGAATGAGCAACCCACCACTGTTTTC[A/T]AGGTGAGTCTGAGCTCAGTACACGTCTTTCTGCTCAKATGTGCCTAATTT
Long Flanking Sequence:
ATGTCAGTGTGTTCCTTACAGAAGGTATATTGTATGTCTTGAAAAGGCGTGCAAATTGCCAAGTGATTTGGTTTCATTTGTCCTGTTTGGAGCTTGAAAGTCACCAATTTCTGTCATTTTTACCTTCATTATATTGAAAATAGCTGCTTGACAAATATTCAGCAAATTATTATCATTTGCTGTTGTGAAAAGAATATATAATGAAGCTCCTTTTGAAGCAGTGATAACAACAGACGTCCGTAATTATATAATAATGTGATGCACAGAATGAAATATAATGAAGGCCCAGGTTTGGTCTTTTTAATGTGAGTAGATGTAAGTTCTCTGAGGATGTGTTTAAACTGAGTGTGTTGCTCCCTCAGGGTACTCCTGCCAGTAAAGTGCGCTACAGAGTGGATCAGGAACTGTCTCCTTACAGTGGAAGCATCTTTGATGTAGAGACGGACACAGGACTGGTTATCACCAAAGTCAACCTGAATGAGCAACCCACCACTGTTTTC[A/T]AGGTGAGTCTGAGCTCAGTACACGTCTTTCTGCTCATATGTGCCTAATTTGAGTCAGAATCCAGCTTAATTTCAGCTAGATTTGAGTTAAGCTTTTGTTTTAAAGCAAAAAAGGACAATGAATATAGATTGGATTTATCTTTTTTTTTTGAACATGCATAAACAATAACTTGCAATCCTACAATGGGAATGGAAAGACAATGCACAAACCAAAAAAAGGCAGACACAGCAGCTCACAGAACATGCAAATAAAAGATGGTGACTTTTTATTTTGATGGTCTGTTTGTTTAATTTTATTACATTGCATTTACAAGCTAACTAATTCTCATTAGATTATAAGTAGACTATTAGGTTGGGGTTAGGGATCGGGTTAGGGTTAGTGCAAGTTGACATGCAAAGTTTTTTATGGTCAGTTCAATGCCTGTTAAAGGAGCAGTATCAGCAGATATTAAGCAGACAGTCTACTAACGCCCCATTCACACGGGGCTTCAGCGTCAACGC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa22367
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000067058 Nonsense 1226 1796 28 35
ENSDART00000139931 Nonsense 741 1308 15 21
ENSDART00000143450 None None 297 None 9
Genomic Location (Zv9):
Chromosome 13 (position 41826863)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 41088915
GRCz11 13 41214805
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TCAAGAGCGCCATCATGTTTAGAAACATGCGCCGGTCCTACTTCAAGTTT[C/T]AGGTCGTCGCCACAGATGACTATGGAAAGGGGCTCACCAGCAAAGCAGAT
Long Flanking Sequence:
AACATGGTAAAAATGTGGTCGAATCTGAAAACATGGTGAAAATCAGGCCTCTGGTGGATTCGCGAAAAGAAAAATTTGGAAAAATTTAGCTCTTTGGACATATTTTGCTCTCTCAAGAAATGTATATAGTGGTGTGTAATCAGAATGAGCCTGGGTTGGATATAAATCTATAAAGACAAAGACAAATTTGGAATGTTTAAAAACAGTATAAAGGTTCACTTTAAATATATTGTATGTATTGAACACAGTGGAATTAGGTGATGGTGAAATGTTGGTTGATCTCAAAAAGGAAAACTCATTTTATTGAATGTATAGTTAAAACGTTTTATTTCTTTCATCAGGCTACAGATGTTGACACTGGGAACTACAGTAAGATGGCCTACAGACTGATCATCCCCCCCACAACTGAGGGGCAGGACAGTTTTGTGATTGAGCCCTACACCGGAGTCATCAAGAGCGCCATCATGTTTAGAAACATGCGCCGGTCCTACTTCAAGTTT[C/T]AGGTCGTCGCCACAGATGACTATGGAAAGGGGCTCACCAGCAAAGCAGATGTAGTGGTGAGTGCGGATCATGTGACCTGTAAAGGCCTGTTTATTGACATTATTCTGCCATGTGAGAGCAAGCGCAGCAATTTGAACATTATAGGGTATATGCACAGCTATTGTTTTTTCCCTACCGATAATCTTTTGGTGAAAGGTTTATGTGACTATTTTCAATATTATAAGGTTCCATTTTTACAGCATCGATGTTGTAATGTAATTAAAATATAATCTATTAAATAGAACTAAGAATTCATTTAATTGTTGAATTGTAAAACGAGATGTAAACGCTAGCGTCGTCAGTAGCTGCAGGCGACCGCAAAAACTCCATTGAGAATACTGTGGTAGAATAAATTGTCATATTTTAAAGACATGAACTATGTAATTTAATGCAGAGCTTCTTGTACAACCCACTTTATATCATATAATAATCAGGCAGTATATTAATCAGGCATTTTTAAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa1509
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000067058 Nonsense 1560 1796 35 35
ENSDART00000139931 Nonsense 1072 1308 21 21
ENSDART00000143450 None None 297 None 9
Genomic Location (Zv9):
Chromosome 13 (position 41784105)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 41046157
GRCz11 13 41172047
KASP Assay ID:
554-1433.1 (used for ordering genotyping assays)
KASP Sequence:
TTAGTGGTTTTCTGTACAGTGACCCACCTTCTCCAACAAGCCCCTGYGGT[C/T]AATTCACCTCATGGTCACTGCCATCCAGAATTCGAGGAMGAGGATTTTAC
Long Flanking Sequence:
CATTCTTCAGTTTGTACAAAGTCTAATATCGTAAGCAAATTTGTTAGGTTTAGCTCTTTCAAAGTCCATTAAAGTGAAGGATTTGTTTTGTGTAGTGGCTCATTAGCATGCTATGCTCCCACGGCTGTTCTCTTCCTTCAATTCCTTCCCATCTCTTTTCACACACGTGCTTCATTCCTCTCTCCTTTTGGTTTTCTCTCGTGGTCTGCAGAAGACGCAGAAGGTCTGTAATCGAGGAGGCGGACAGACAGAGCCTCATACGAAACTTCGCCTCGCGTGCCATTGCTGCTCACAAACAGACCACTGGAAACGGACAGATGCGCAGCAAGCTTCCCAAATCAGAAAGCGCCATCACCTTCCTGTCAGACGAACGGCCACTCACTACTCAAAATCCCATTTTCCAGGATGGCCTATCTAGTAGTCCGGAACCTAACTTGGAGGTCCGAAGGATTAGTGGTTTTCTGTACAGTGACCCACCTTCTCCAACAAGCCCCTGTGGT[C/T]AATTCACCTCATGGTCACTGCCATCCAGAATTCGAGGACGAGGATTTTACAGTACTCTGCGCAGACAAGCTCTCTGGGACCCGGCCCAGTGGGAGGAGCAACAGCTGAAGGCGGAGCTTACAGACAGCAGGGAGGAGCTTGATGCAGATCAAAGTGGTCGGAGTACTGAAACAAAACTATCAGTCAGAGAACAGGCCAGACAGTTTGAGGCTTTGGCTGATCGAACCCCCAGGCAAAGTCGTGACTCTTACGCATCTTTGGATCCTGACGACCCACTGCTGGGCACCATCATGCTTTCGTATAGTACAATTTCTGTTGGCAAGGACAGCCCGCCATGCATTATCATAACAGGGGACGATGGTGAGACTCCTCCTCCACCCACAGCTCAGCGACCGACTCCACCGGTTGTGAGGAAGTTCAGCTCCAGCATCTCAAATTACATGACAGTGGAGCCTTGCGAGATTTTGTTGGAATTCATATCAGACTTTCCAGGGAGCCCA
Associated Phenotype:
Not determined