Busch Lab

ZMP

lrrc9

Ensembl ID:
ENSDARG00000054352
ZFIN ID:
ZDB-GENE-080917-56
Description:
leucine-rich repeat-containing protein 9 [Source:RefSeq peptide;Acc:NP_001107274]
Mouse Orthologue:
Lrrc9
Mouse Description:
leucine rich repeat containing 9 Gene [Source:MGI Symbol;Acc:MGI:1925507]

Alleles

There are 7 alleles of this gene:

Allele Name Consequence Status Availability
sa42234 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa9718 Nonsense Available for shipment Available now
sa28139 Essential Splice Site, Missense Mutation detected in F1 DNA Not yet available
sa22336 Splice Site, Nonsense Available for shipment Available now
sa1345 Essential Splice Site, Missense Available for shipment Available now
sa44791 Nonsense Mutation detected in F1 DNA Not yet available
sa6312 Essential Splice Site Mutation detected in F1 DNA Not yet available

Mutation Details

Allele Name:
sa42234
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000076533 Essential Splice Site 256 984 None 21
ENSDART00000100719 Essential Splice Site 295 1350 None 30
ENSDART00000114995 Essential Splice Site 256 985 None 22
ENSDART00000141217 None None 258 None 7
ENSDART00000146752 None None 447 None 11
ENSDART00000148112 Essential Splice Site 35 626 None 13
Genomic Location (Zv9):
Chromosome 13 (position 31703522)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 31349470
GRCz11 13 31479920
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ACAGTTACCGGAGGAGAAGATACGAGTGCTAACACACACGCTTAGACATG[T/A]GAGTATAGAATACCTCGATGTACGTCACTTGTATAAGTTTAAATGTAAAA
Long Flanking Sequence:
CTTTTGCTAAATGAAATCATACGAACACTCCTAGTCCCTACAGAAAAACACACAGGATGTAAAATTTGAGCAACTTTTGTTTACATAGGAGCTGACTCATCTGGCTCGGCTTCCTAGACTGAGATACCTAAGTCTAAAGGACCCTCAGTGCATCCCAAACCCAGTGTGTCTGCTCTATAATTACTACATCCATGTCTTGTACCACATGCCAAACCTGCAGCTCCTGGACACATATGACATGTCAAGCAGACAGCTCAAAGACACGGCAGAGGTAGGGGAATAATTATTTTATGCATCTGAGTGTATTGTGTGTATGGTTAAAGTGATAAGAATTGTGCATCAGTCTACAGTGTTGAAGAAAATGATGTATTACACCATGCGGGTACGTGGTGTGCAAAGACAGTTTGATGAACTCAGAGCCAAGCTCAGGCAGCAGAGAAGAGAGCAGATACAGTTACCGGAGGAGAAGATACGAGTGCTAACACACACGCTTAGACATG[T/A]GAGTATAGAATACCTCGATGTACGTCACTTGTATAAGTTTAAATGTAAAAACTGTAAATGTTTATACAGTTGAAGTAAGAATTATTAGCCCCCCTGAATTATTAGCCCCCTGTTTATTTTTTCCCCAATTTCTGTTTAACAGAGAAAATATTTTTTCAGCACATTTCTAAACAAAATAGTTTTAATAACTTATTTCTAATAACTGATTTAGAATTAATCTTTGCCATGATGACAGAAAATAATACTTTACTAGATATTTTTAAGATACTTCTATGTAGCTAAAGTGACATTTGAAGGCTTAACTAGGTTAATCAGGTTAATTAGGCAGGTTAGGGTTGCACTGCACCAGGTCTGCGTCCAGACCCCTCTCTCCGCTCTTCCCAGGGCACTGTGAGTTCAAGCATAATCAACTGTCTTGTTGCTTCAGAAATGATAATTATGTCTGGTCAGAGTGGTGTTGTAATTATGTGCTGTGGGAACTTCAGCTGCTTCCCCAGGTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa9718
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000076533 Nonsense 478 984 11 21
ENSDART00000100719 Nonsense 514 1350 13 30
ENSDART00000114995 Nonsense 478 985 12 22
ENSDART00000141217 None None 258 None 7
ENSDART00000146752 None None 447 None 11
ENSDART00000148112 Nonsense 257 626 6 13
Genomic Location (Zv9):
Chromosome 13 (position 31709467)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 31355415
GRCz11 13 31485865
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CTYTYTCTAACAGCATGAGTGTGTCTGATCGACTGAGAATGACTTTCATG[C/T]AAAGGATGARCTGCTCAACATCAAACCGAGAGCTTCTACCCTTCAGATAC
Long Flanking Sequence:
CTTGCACTGTAAAACATAATGAGCTCTTTATGATTATTTGAATGCTTTTGCTTTAATTAGTATTAGTCATTCCAAATGAATTAATCAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTTGTGTGTGTGTAACAGGAACTATAAACGCAATATGGAGTATCTGTTCTATGTGCCTGATCCAGAACATTCCTGTGAAAATGATGAGATGCTACAAATCCCAGAAAATGGTTTTAAAAGTGCTGATGCTTATAAGGTACAAATGCTAAAAAGCACAGGTAGGAGTGAGTGTGCATTTATGTTGTTTCAAAATCAACCCATTATCTTAAAGATAAATGTGTGTTTGTTTGTGTGTTGCCTTCAGGCATTAGGCAGAGAGAGAGCCGTCCCTTTTTCTAACAGCATGAGTGTGTCTGATCGACTGAGAATGACTTTCATG[C/T]AAAGGATGAGCTGCTCAACATCAAACCGAGAGCTTCTACCCTTCAGATACGGTCTGGATTCCCTCAGAACACCTAAATAAATAAAATAAACATTACTAGTGGCACCAAACTATAACAGAAAACTTTTTAACAGTTCCATTTATTTAAATAAACAGGTAACTTGTGCAAAAGCAACCCAGTAAGACCAAAGATACACAAGATTGCAGTTATACATCACAATGTACATACATAAACAACATATCTCAGTTCAATGCAAAGGAGACATTGGCTTTGGAGTTGGCATAGCAAAGCCTACAGCGAACAACGTTTGGGACTACAAAAAAAAATCATCTGGGCTAGTGAGATCACAAGGGTTTGCGGTTACATGTATTCACTACGCACACACCCTGTGCAGCGAAGGGGTGTGACCAGAGGTGATGTAATGTTATAGCAGAGAAAGCTAAAATGTCGTCCAAACACTGCTATTTCCACAGAGCTTCTTCTGTTTTTGTATTTGGGCT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa28139
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Essential Splice Site, Missense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000076533 Missense 533 984 12 21
ENSDART00000100719 Essential Splice Site 573 1350 14 30
ENSDART00000114995 Missense 533 985 13 22
ENSDART00000141217 None None 258 None 7
ENSDART00000146752 None None 447 None 11
ENSDART00000148112 Missense 312 626 7 13
Genomic Location (Zv9):
Chromosome 13 (position 31711550)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 31357498
GRCz11 13 31487948
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AGACTGCGATCATTATCCCAAGGCAAACTCAGTCTACCTCAGTACCAGCT[C/T]TAAACAACAAAGTCACACAGCTCAAACAACCCCTGGTGAGTTTAAGCACG
Long Flanking Sequence:
GCATTACATTCCACAAATCAAACACTGATTTTTGTGCTCAAGAAACATTTATTTTTATCAGTGATTAAAATAGTTTGTGCTCTCTAATATGTTTTTGTAAAAAGCATGATGCAGTTTTCAGGAATCTTTGATGAAGGAGGAAGCTCAAAGTAACAAATTTGCAACCAATATATTAAAATCCTTCTAAATGTTTTATGAAGTGCCAATGTTGACACTTTTAATCAATTCAATGCATCCTTGCTCATTAAAATGATCCATTTTCCTAACAAAATCTTACTGACTTTAAACTTTGGAACTGTGGAATGCATACAATATGAATATCTGTAATATCTGGACGGTCTGACATTTGATTGTGTTTGTTTTCATGCATTTGTTTGCATTTTTAGGTCAGTTAATAATATCTAAAGTGTTCCTGGGTCGTAGTGTTGCAGTAAAGGATGGTCTTCCCATAGACTGCGATCATTATCCCAAGGCAAACTCAGTCTACCTCAGTACCAGCT[C/T]TAAACAACAAAGTCACACAGCTCAAACAACCCCTGGTGAGTTTAAGCACGTGACCCATAAGAAAAACAACATGTATTCAGGGTAATAGCGATCAAAGTAGCAATATGTGTGTGTGTGTGTGTGTGTGTTTATCAGACATGCTGTGTTCCTCCAGCCTGCCGAACAGCTGTGACTGTAAACAGCAGCAGAGACTGTGGTATATGTTTGACCACGAAATGGTACTTCCAGAATACCTTGTGGACTTTGAATATGTAACCCAGGTATTGGTATATGTTATTATATTTACACTTATACATCCACACTAGAATGTATTAGTCAGTAATTAAATTACGTTTATTTCTCTCTAGGACACAGTCCAGGCTTCTCCAGATTCCCCATCCAGTTATCATATGTCTCCTGCTGATGCCCCATCTGTGTCCTATACTGCGCTGGAACTGGATGAGGAGGCATTAAACATGGAGCCCATCCTGAAGTCCCACCCCAAGATGCTCAGCCTAGAT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa22336
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
C > T
Consequence:
Splice Site, Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000076533 Nonsense 535 984 12 21
ENSDART00000100719 Splice Site None 1350 None 30
ENSDART00000114995 Nonsense 535 985 13 22
ENSDART00000141217 None None 258 None 7
ENSDART00000146752 None None 447 None 11
ENSDART00000148112 Nonsense 314 626 7 13
Genomic Location (Zv9):
Chromosome 13 (position 31711555)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 31357503
GRCz11 13 31487953
KASP Assay ID:
2260-6614.1 (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GCGATCATTATCCCAAGGCAAACTCAGTCTACCTCAGTACCAGCTCTAAA[C/T]AACAAAGTCACACAGCTCAAACAACCCCTGGTGAGTTTAAGCACGTGACC
Long Flanking Sequence:
ACATTCCACAAATCAAACACTGATTTTTGTGCTCAAGAAACATTTATTTTTATCAGTGATTAAAATAGTTTGTGCTCTCTAATATGTTTTTGTAAAAAGCATGATGCAGTTTTCAGGAATCTTTGATGAAGGAGGAAGCTCAAAGTAACAAATTTGCAACCAATATATTAAAATCCTTCTAAATGTTTTATGAAGTGCCAATGTTGACACTTTTAATCAATTCAATGCATCCTTGCTCATTAAAATGATCCATTTTCCTAACAAAATCTTACTGACTTTAAACTTTGGAACTGTGGAATGCATACAATATGAATATCTGTAATATCTGGACGGTCTGACATTTGATTGTGTTTGTTTTCATGCATTTGTTTGCATTTTTAGGTCAGTTAATAATATCTAAAGTGTTCCTGGGTCGTAGTGTTGCAGTAAAGGATGGTCTTCCCATAGACTGCGATCATTATCCCAAGGCAAACTCAGTCTACCTCAGTACCAGCTCTAAA[C/T]AACAAAGTCACACAGCTCAAACAACCCCTGGTGAGTTTAAGCACGTGACCCATAAGAAAAACAACATGTATTCAGGGTAATAGCGATCAAAGTAGCAATATGTGTGTGTGTGTGTGTGTGTGTTTATCAGACATGCTGTGTTCCTCCAGCCTGCCGAACAGCTGTGACTGTAAACAGCAGCAGAGACTGTGGTATATGTTTGACCACGAAATGGTACTTCCAGAATACCTTGTGGACTTTGAATATGTAACCCAGGTATTGGTATATGTTATTATATTTACACTTATACATCCACACTAGAATGTATTAGTCAGTAATTAAATTACGTTTATTTCTCTCTAGGACACAGTCCAGGCTTCTCCAGATTCCCCATCCAGTTATCATATGTCTCCTGCTGATGCCCCATCTGTGTCCTATACTGCGCTGGAACTGGATGAGGAGGCATTAAACATGGAGCCCATCCTGAAGTCCCACCCCAAGATGCTCAGCCTAGATGAGAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa1345
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
T > C
Consequence:
Essential Splice Site, Missense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000076533 Essential Splice Site 586 984 13 21
ENSDART00000100719 Missense 616 1350 15 30
ENSDART00000114995 Essential Splice Site 587 985 14 22
ENSDART00000141217 None None 258 None 7
ENSDART00000146752 None None 447 None 11
ENSDART00000148112 Essential Splice Site 365 626 8 13
Genomic Location (Zv9):
Chromosome 13 (position 31711812)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 31357760
GRCz11 13 31488210
KASP Assay ID:
554-1259.1 (used for ordering genotyping assays)
KASP Sequence:
CGAAATGGTACTTCCAGAATACCTTGTGGACTTTGAATATGTAACCCAGG[T/C]ATTGGTATATGTTAKTATATTTACACTTATACATCCACACTAGAATGTAT
Long Flanking Sequence:
CTAACAAAATCTTACTGACTTTAAACTTTGGAACTGTGGAATGCATACAATATGAATATCTGTAATATCTGGACGGTCTGACATTTGATTGTGTTTGTTTTCATGCATTTGTTTGCATTTTTAGGTCAGTTAATAATATCTAAAGTGTTCCTGGGTCGTAGTGTTGCAGTAAAGGATGGTCTTCCCATAGACTGCGATCATTATCCCAAGGCAAACTCAGTCTACCTCAGTACCAGCTCTAAACAACAAAGTCACACAGCTCAAACAACCCCTGGTGAGTTTAAGCACGTGACCCATAAGAAAAACAACATGTATTCAGGGTAATAGCGATCAAAGTAGCAATATGTGTGTGTGTGTGTGTGTGTGTTTATCAGACATGCTGTGTTCCTCCAGCCTGCCGAACAGCTGTGACTGTAAACAGCAGCAGAGACTGTGGTATATGTTTGACCACGAAATGGTACTTCCAGAATACCTTGTGGACTTTGAATATGTAACCCAGG[T/C]ATTGGTATATGTTATTATATTTACACTTATACATCCACACTAGAATGTATTAGTCAGTAATTAAATTACGTTTATTTCTCTCTAGGACACAGTCCAGGCTTCTCCAGATTCCCCATCCAGTTATCATATGTCTCCTGCTGATGCCCCATCTGTGTCCTATACTGCGCTGGAACTGGATGAGGAGGCATTAAACATGGAGCCCATCCTGAAGTCCCACCCCAAGATGCTCAGCCTAGATGAGAAAGCCATACTGACAGCGGCCAGAGCGAACATTCTCAGTCAGATCACAGTGAGACTTACAATACCCCAAACACATAAACTCATGCATTTGTAGTATGTAGGTCAGTCAGGCTCTGTTTCTACATTGTATTGACCTGAAGTGGTTGTTCGATGACAAATGATCACACAAGACCATTTCTTATGATGTCAAACATAGTGATATTTTATAAACATATTTCAGGAGAAGCATGCACAGATGTTCTATCTTAAACTTCTTCTTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa44791
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000076533 Nonsense 910 984 20 21
ENSDART00000100719 Nonsense 937 1350 22 30
ENSDART00000114995 Nonsense 911 985 21 22
ENSDART00000141217 None None 258 None 7
ENSDART00000146752 None None 447 None 11
ENSDART00000148112 None None 626 None 13
Genomic Location (Zv9):
Chromosome 13 (position 31720456)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 31366404
GRCz11 13 31496854
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGTCTGTTTAAAACTGCACTTATTTGTTTGGTGTGTTGCAGGCTTGTGTT[C/A]GATGCCTCGCTTGACACGTCTGAGCATTAACAACAACCACCTGCAATGTT
Long Flanking Sequence:
TGGAATCTGAGAAATCACAAATTTTTATTCTGCTTTCTGATATTTTTTTGGAGCTCAACAACACAATTTCCTATTTATTACAATTATTTAAGAAATGCTTATATGTAAATGTAAAATGGATTCATGAATGATAAAAAGTTGAATAAATTAAGACAGATTTTATTTTATTTTATTTTAAGTTGAACCGTTCCTTTAACTGATATACTTGTGGTATCAGATCACAGCACTGAATCTAGATGGTCAGCGGTTGACCCGGATCAGTAATCTAGACCGGCTGGTCAATCTACGCTGGGCTTCTTTTGACCATAACGAATTAACCAGAATTGAAGGTCTGGAGCACTGCCACCTACTGGAGGAACTTTCCCTTAACTACAACAGTGTCAGCAGACTGGAAGGTACTGCTTTTTCTTTTTCCTTTTACAGGTGTCTTGTATTGTTCAGTTTTTAATATGTCTGTTTAAAACTGCACTTATTTGTTTGGTGTGTTGCAGGCTTGTGTT[C/A]GATGCCTCGCTTGACACGTCTGAGCATTAACAACAACCACCTGCAATGTTTAGATGGAGACATTTTAGACCAGCTACCAAACCTTCACTTCCTCTCTGTCGAAAACAACATTATCTCCTCTTTGCATGGACTTCAGAGGTCACGCTCCTTATTTGAGCTGTACGTCGGCAACAATGACATCAGCACGACAAGAGACATTTACCATTTAAAGGTCAGGAGATTTTGAATGGTTCTGCACAACTTATAAAGCATTCGTTCAAAATTCATGATGCTAAGAATGTAATGTTCTGTAGGAATTGAAAGTGTGGTCATGATGTAATGTGTTTTTTTCTCTCAGGCACTGTCTAGTTTAGTTATTCTGGATCTATATGGGAATCCCTTAGTGAACAAACTGGAGAACTACAGGATCTACATGGTTTTCCACCTGCCATCTCTTAAAGCACTGGACGGAGCGGCTGTGGTAAATATATCTGATGTTTTCATATACCAATGTTTGTTTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa6312
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000076533 None None 984 None 21
ENSDART00000100719 Essential Splice Site 1174 1350 26 30
ENSDART00000114995 None None 985 None 22
ENSDART00000141217 None None 258 None 7
ENSDART00000146752 Essential Splice Site 153 447 4 11
ENSDART00000148112 None None 626 None 13
Genomic Location (Zv9):
Chromosome 13 (position 31725836)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 31371784
GRCz11 13 31502234
KASP Assay ID:
554-4675.1 (used for ordering genotyping assays)
KASP Sequence:
ATAAAGTTAGTTCCAGTGGATACGGGCAGCAGAACAGCAGACCCAGCAGG[T/C]ACACACATACACACATGTAYGCACGYACACTCCTGAATAAGKKATTTATG
Long Flanking Sequence:
GCCAGTGTAATATGATCATATTTTCTAGACCTGATAAGAACTCTGGCAGCTGCATTTTGTACTGGCTGAAGTTTGTTAATAGAGGATGCTGGGCACCCAGCAGAGCATTACAGTAATCCAGCCTAGTAGTCATAAAAGCATGGACTAGCTCTTCTGCATCTGAGATGGAGAGCATACTTTGTAACTTGCCGATATTTCTGAAATGAAAGAAAGCCGTTTTTGTGACATTGTGATATTGTTAAATGCATTAAGCTGCTGCCATGTGATTGGCTGATACTTGTGTTAATGAACAGATGAACAGGTGTGCGTAATAATGTAGCTGATGAGCGTATATTTACACATGTTTTATGTTGTTTCTGCAGGTTTTGTCTTTAAACTATAACCACGTTGAGTCAATTCTCCCACGTCAAAAAGTTCAGAGTCACATGAGCAACAAGCAGATTCTCTATCATAAAGTTAGTTCCAGTGGATACGGGCAGCAGAACAGCAGACCCAGCAGG[T/C]ACACACATACACACATGTATGCACGCACACTCCTGAATAAGTTATTTATGAGGACTCTGCAAAGGTGTAATGTATTTTATACTGTAAAAACATGTTCCAAACCAAACTCTCAAATTGTCTAGAATTACAAGCAACACAAGCCATGTCCTAAAAAAAACACCCACCCCCAACATAGGTCATACCCATGTCAAATCTTTGTTTTTATAAGCCACCTAAGCCAGTAATACAAACATACATACACAAACTTCATTTCATCTTCGTAATCCATTGGGATAATATACTGTAGTTTCTTGTCTAACCACTAGGGAGCATCATAATTGCATATAACAGACATTTTCTGACATCAGAGAATGTATGTATAAAGTCACAGTTTCTTATGCTGCTATGTTTTGGAAGTGACAGACACATTTATTTAAAGACTGCTTGTAAAGTATACAATATATTGATGCACTGTGTACATGGCTGGTCTTTTCCATATTAACATATTTGCCTTGTCTGAC
Associated Phenotype:
Not determined