Busch Lab

ZMP

ENSDARG00000074745

Ensembl ID:
ENSDARG00000074745
Human Orthologues:
COL9A1, COL9A2, COL9A3
Human Descriptions:
collagen, type IX, alpha 1 [Source:HGNC Symbol;Acc:2217]
collagen, type IX, alpha 2 [Source:HGNC Symbol;Acc:2218]
collagen, type IX, alpha 3 [Source:HGNC Symbol;Acc:2219]
Mouse Orthologues:
Col9a1, Col9a2, Col9a3
Mouse Descriptions:
collagen, type IX, alpha 1 Gene [Source:MGI Symbol;Acc:MGI:88465]
collagen, type IX, alpha 2 Gene [Source:MGI Symbol;Acc:MGI:88466]
collagen, type IX, alpha 3 Gene [Source:MGI Symbol;Acc:MGI:894686]

Alleles

There are 8 alleles of this gene:

Allele Name Consequence Status Availability
sa22198 Nonsense Available for shipment Available now
sa10904 Essential Splice Site Available for shipment Available now
sa19050 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa31901 Nonsense Available for shipment Available now
sa38914 Nonsense Mutation detected in F1 DNA Not yet available
sa35399 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa12650 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa22198
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
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Mutation:
G > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000103004 Nonsense 90 780 3 26
Genomic Location (Zv9):
Chromosome 13 (position 1611964)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 1605266
GRCz11 13 1736789
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TCTGTCATCGCCACCTTTAAAGTGACCAAGGACACTGCTAAAACATCCTG[G/A]AATCTATGGCAAGTCAGTGACCCTGAAGGCCGAGATCAGGTCGGCCTTCG
Long Flanking Sequence:
CGTGTCACCCGTCTAAGAAGGAGGAGTAGGGGAGGAAGGGGGGACTCTTCAAAACGAAGATAGCAATGGAATAAACCCCAGGGTATTTATAGTAGTTTAGGAGTCATCTGATTGGATCGTAGTGAATTAGATAATGCGGGTCAGCTGTTAGCAATCATAAGCACGTGATCCTCTCGAAATTTGTTTATACATAAACTTCATGTAGTGGTGGGGATATTCAGTGGCTCGTTCAGCAGGTTTTAGCATGAAGGCAGGTCTCATGGAGTGACATGCTGAATTATTCACTCAACAACACTGATTCATTAAGGAAAAACACAAACACTTTGAGCTTCTTGGAAATGTCCTCTAGCTGATTCTGCTTTTAATTTGCTTGCACTGATTCATTTCTCTTTTCCCCATTTCATCCCCCCATCTAGTGACATCTACCCAGACGGTCTACCATCAGACTACTCTGTCATCGCCACCTTTAAAGTGACCAAGGACACTGCTAAAACATCCTG[G/A]AATCTATGGCAAGTCAGTGACCCTGAAGGCCGAGATCAGGTCGGCCTTCGCTTTCAGGGCGACACTCTAACCCTGGACTTCTTCTACACCAACCCGAAGGGCACACAGATGCTGCGGACCTTCCAGAGAGTAGAAAAACTCTTTGATGGAGAGTGGCACAAGTTGGCATTGAGTGTAAAAGGCGAACAAGTGAAGCTATTTATTGACTGTGAGGAGATCAGTGTTGAGCCTCTGGATGAGCCACGGCCGGTGATCCGACAAGGTTTTACGTCCATCGTAAAGAGAGCCGTAGGTGATCGCTCTGTCTCGGTGAGTAAGACAGGGTGTGATACAGATTTAACAGGCTGAAATAATGTGACCATCATTTTGTTACAATAAGCCAGGGAACGCCTTGTAAGAGCTTGATTAAACAAAATTGATTAGACCTCCATAGTCAGAAGCTGTCCAAGACGTTATATCTCCTCTCTCATGTCGGGGTGTGTGTTTGTAACAGATGCCAG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa10904
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
G > T
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000103004 Essential Splice Site 271 780 6 26
ENSDART00000103004 Essential Splice Site 271 780 6 26
Genomic Location (Zv9):
Chromosome 13 (position 1615428)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 1608730
GRCz11 13 1740253
KASP Assay ID:
2260-5913.1 (used for ordering genotyping assays)
KASP Sequence:
ACAGAGGTCTGCCGGGGAATACAGGRGATCCMGGCCRACAGGGCAACTGG[G/T]TAAGAGTTCAGTCTGAAATCTCACACTATGGTGTAAGAGTTNNNAATGTT
Long Flanking Sequence:
ACATGAGGCCGAGTAATTCAAGAGTGAGTTAATTTTAACTTTGTTAGGGGCTTTCTTTGGTAGGTTAAAAGGGTTTATAGACTGTTTAGAATCTCTGTGCATGTGCAGGTGGATCTGCAGAAGATGGAAGTGTCCTGTGATGCTGATCAAGCGTACTCTGAGAGCTGCTGTGAACTCTCCAGTGTGGTGAGTCTGTGTGCCGTGTGAACATTTTGCTCTTCTGCATGAGCTTTCAGTCTGTTCTGAACGGCTCCTTCCTCAACAGTGTGGAGGATATGCTGAGATCGGTTTAACTGCAGGACGAGGAAAAGCCACCTGTAAATGCATGCATGGACAACCAGGTGTCCAGGGATCCCCAGGACCCAAGGTAGCCAAAATCTTCCTTCTGTTTTCCTACACGATAAACGCCATATTGGAGTCTCAACAACTCTACTGATCTTCCGTAGGGTCACAGAGGTCTGCCGGGGAATACAGGAGATCCAGGCCGACAGGGCAACTGG[G/T]TAAGAGTTCAGTCTGAAATCTCACACTATGGTGTAAGAGTTAACAATGTTTGAGCTGGACAAACAAACAGAAGTAGTTGCTGGTTGGGTTAAATGATTTTGGAAAAATCTGACATGGCCATATTTGGTTTTGCCGTGATATGGATTTAATATCGCAAGATGATTAATACATAATTACATAGGTAACTTTATAGGTAACTTCAATAAGTAATCTAATCCTCTGATGTAACTATTGCGGATACATTGTGATATCGATTGTTCAGCTCTAGTTGTTGGTCGTTGGGATTTGATAAAGATGCACTAATGGACAAACACAAGGATTCGAGAATGAAAGCAAGCAGTATTGAAGGAAGAGACCGATGAAAGAGGGAATTAACCTGGAATAGATCCTGTCTGGGACGTGAAGTTGTGGAAAATGGCAGTAGAAGTACAGCATGATGGAAATAAAGAGTCGGGACTCGCTTGGAGTAAATGGTAAACACTGCGGCTTCTCTCGTATAG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa19050
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > T
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000103004 Essential Splice Site 271 780 6 26
ENSDART00000103004 Essential Splice Site 271 780 6 26
Genomic Location (Zv9):
Chromosome 13 (position 1615428)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 1608730
GRCz11 13 1740253
KASP Assay ID:
2260-5913.1 (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ACAGAGGTCTGCCGGGGAATACAGGAGATCCAGGCCGACAGGGCAACTGG[G/T]TAAGAGTTCAGTCTGAAATCTCACACTATGGTGTAAGAGTTAACAATGTT
Long Flanking Sequence:
ACATGAGGCCGAGTAATTCAAGAGTGAGTTAATTTTAACTTTGTTAGGGGCTTTCTTTGGTAGGTTAAAAGGGTTTATAGACTGTTTAGAATCTCTGTGCATGTGCAGGTGGATCTGCAGAAGATGGAAGTGTCCTGTGATGCTGATCAAGCGTACTCTGAGAGCTGCTGTGAACTCTCCAGTGTGGTGAGTCTGTGTGCCGTGTGAACATTTTGCTCTTCTGCATGAGCTTTCAGTCTGTTCTGAACGGCTCCTTCCTCAACAGTGTGGAGGATATGCTGAGATCGGTTTAACTGCAGGACGAGGAAAAGCCACCTGTAAATGCATGCATGGACAACCAGGTGTCCAGGGATCCCCAGGACCCAAGGTAGCCAAAATCTTCCTTCTGTTTTCCTACACGATAAACGCCATATTGGAGTCTCAACAACTCTACTGATCTTCCGTAGGGTCACAGAGGTCTGCCGGGGAATACAGGAGATCCAGGCCGACAGGGCAACTGG[G/T]TAAGAGTTCAGTCTGAAATCTCACACTATGGTGTAAGAGTTAACAATGTTTGAGCTGGACAAACAAACAGAAGTAGTTGCTGGTTGGGTTAAATGATTTTGGAAAAATCTGACATGGCCATATTTGGTTTTGCCGTGATATGGATTTAATATCGCAAGATGATTAATACATAATTACATAGGTAACTTTATAGGTAACTTCAATAAGTAATCTAATCCTCTGATGTAACTATTGCGGATACATTGTGATATCGATTGTTCAGCTCTAGTTGTTGGTCGTTGGGATTTGATAAAGATGCACTAATGGACAAACACAAGGATTCGAGAATGAAAGCAAGCAGTATTGAAGGAAGAGACCGATGAAAGAGGGAATTAACCTGGAATAGATCCTGTCTGGGACGTGAAGTTGTGGAAAATGGCAGTAGAAGTACAGCATGATGGAAATAAAGAGTCGGGACTCGCTTGGAGTAAATGGTAAACACTGCGGCTTCTCTCGTATAG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa31901
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
T > G
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000103004 Nonsense 280 780 7 26
Genomic Location (Zv9):
Chromosome 13 (position 1623699)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 1617209
GRCz11 13 1748500
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AGCTCAGACTGTGTGTTATTGCAGGGCCGACGTGGGAACACTGGAGATTA[T/G]GGGCACATAGGAGAAACTGGGCCTAAAGTGAGTGTCTCCTTTATGCGTTC
Long Flanking Sequence:
TGAGCCGAGGTTCGAACCAGCGAACCAGCGACCTTCTAGCTGTGAGGCGACATGTGGTCTACACATTTGACATTTGCTAATGCATGGTTGCATTTCTTAAAAATGTGGCATTGACGCAAGTAGTACACTGGCATAAAAACAACACTGTGCACAGACCTTATGAAGTTCTACTTGCCTTTTATATAGGTTTTTCTTATTATATCCCTGGAAGGTATTGGCAGACGTTCAGTCGAGCAAGGATCCTATTTGGTCAAGTGCATTTTTATACCAACATGGGGGGAAACGTTTCCAGCTTCATCTAGCTCCGGGCTGTCATATAGTGGAATACATGCTGCCATTTTCCAACACCGTAAACCAAGATCTTTACGTCTTCAGCCAACCTTATTGGACAATTAAACCCTGCATCTGTTGCCGTTGCTATGTGCTATTTACTATTACAAGCAAATCTTCAGCTCAGACTGTGTGTTATTGCAGGGCCGACGTGGGAACACTGGAGATTA[T/G]GGGCACATAGGAGAAACTGGGCCTAAAGTGAGTGTCTCCTTTATGCGTTCTACTGGTCCATACTGTTGCACAAGCACACTCACTAGTCAGCTTGCATTCCACAGGGCGAGCAAGGCATCAAAGGTGAAAAGGGCATGAGAGGACTTCGAGGCCGGGAGGTAATGCATTATACACCTGCACAAAAGCCTGCATTGATGGCATTATAGCATTGTAATGACATTGTCTCCTCTATTGTAGGGGGATAGGGGACCCAAAGGCCTGAAAGGCCTAAAAGGAGCTTCAGGTCACAAGGTAATGTCAGTATTATTGGAATCTACTAGATTACCTTTGGAGATATGCAAAAAACAACCACTATGCTTTGATATTTTGTATATAATGTACTAGATGCTGCTTTTTGTGCTAAGTTTATGTAGAAACATCAACATAAATGACAAAATAGCTTGAAAAGTAAGTGAAATTTAAACCTGTATTAAGATGTAAACCTATGTTCATGTTAATAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa38914
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000103004 Nonsense 370 780 12 26
Genomic Location (Zv9):
Chromosome 13 (position 1626365)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 1619875
GRCz11 13 1751166
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ACAGTTCCCATTTCTTCTTGGAACAGGGAAGCGAAGGCTTACACGGAGCT[G/T]AAGGATCTCGAGGACCACGAGGCCACCAGGTATAAAACAGACTGGGAGCC
Long Flanking Sequence:
TTTATATATTGTGCAGCCCTAATGTGCATCACAGCTTGAAGATACTGTATAACAAAAACAGCAATGCATTGATCATCACACGTATTAAGCACTGACATTATTATCATGCTATGCATCTGATCTAAGGGAGTGCGAGGGTCACCTGGAGAGAGGGGTGAAACCGGACAGCTGGGGGAAGTTGTAAGTTCTGGTTTAAAACACTCTTCTTCTTTTTTTTTTTTTGTTGCTGTTATTGCTTCGATAAAATATATGTGAGATGGATTGAGTTATTGGGGATGTGAATGACTCACTCGTTCCCCACCACATCTCCCAGGGTGCAGCAGGAGAACGGGGATATGAGGGGATTGCGGGATATCAGGGAGTGAAGGTATGTTTTTTCTTCTTCTTCTCCTCGCTCTGGATTGTTTTTTGTCTCTTGAACATTTGTTGCTGTGTTTGGTTGGAATTCTCACAGTTCCCATTTCTTCTTGGAACAGGGAAGCGAAGGCTTACACGGAGCT[G/T]AAGGATCTCGAGGACCACGAGGCCACCAGGTATAAAACAGACTGGGAGCCTTCTGCATTCGGCTGCATGACATTTAATAACCATAGAAATATCCTACATTTCAAACGTGACACTTGTGGTCATCACCGTATGTTCATATCTTTGAGAAATGTATGTTCAACTCACTTCAAGTTTATTTGTTTGGTGCTTTTCACAATAATTCTTGTTTTAAAGCAGCTTCACAAAGGTGTACATATAACATTACAATCACATTTGGAAAAGTTGAAGGTGCAGTATGTAAGTTTGACACCCAGTGGTTGAACTTGGTATTGCACTCCTGGTTCGAAACACATGCAAGTGCAGGTTGCCAGATTGACGACACCAACAGTACACTGTAAAAAAATGGCCGTGATTTCAACTGTAAAAAACTGTAAAAATGCTACATGCAGTACAAATCCGTACTGTTACATAACAGTATGTTTCCTTAATATATATGGCGAATAACCGTAAACTGACTTTCC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa35399
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > G
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000103004 Essential Splice Site 449 780 17 26
Genomic Location (Zv9):
Chromosome 13 (position 1630878)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 1624388
GRCz11 13 1755679
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGATATGTTTGCTTACTATATATACAGTAATGTGTTTGGACATTTGACTT[A/G]GGGTGAAAAAGGTGAACAAGGTCCTCCAGGAAACATGGGCCCTCCTGGAC
Long Flanking Sequence:
CCGTGAGTATAACCGCATTCACCATCGAGAGGCGCTATAATCACTCTCATAGGAGAATTTTGCTTTCACCATCCAAAATAAATGAAGTTATTCAACATGTGCGTCCTATAGCTCCGCCCCTTCCACTACGTAAGCAAACCTGCAGTCGTTGAGTGCGTGAAGTGTCCATCATTCCACACTTCATTTTAGCGGCTGAATGAGGGCATCATCCGGGTAATTAAAGTGCACTTATTATTTTTAGAGTTTTCAGTGTGAACACACTACTTGCACTATTTATACTACAAAATGGCGTAGAATAGTGCATAAGTATGCGATTTGGGACGCAGCTAAACTCTTCAGGACACCGGCCCTCCAGGACCGAGCTTGAACACTCCTGGTTTACACAATATCAGACTCCACCAGATTCGAAAATAATCCCCATTTTAACATTGCTTTATGGCTGATTGCATCTGATATGTTTGCTTACTATATATACAGTAATGTGTTTGGACATTTGACTT[A/G]GGGTGAAAAAGGTGAACAAGGTCCTCCAGGAAACATGGGCCCTCCTGGACTCACGGTAAGTGCTTTTTTGATGACTGCTATACAAGACTTACCTAAATATTTTCACCTTGGACGTTTACGACGTAGAAATAGATTGTGGCTTTCGGTAGATTTATGAAGTGCTGTGATCTCCAGGGTTCGCAAGGTTACAAGGGCTCTGCTGGAAAGCCAGGAAGACCAGGATTTATCGGGCCTCCTGGAAGAACGGTGAGCTGCACACACCAAAAAATCAGAAAGCTTTTGAAACTAATACCCTCCAAAATGCTTAAATATGTCATGTCTTCATAGGGCCACATTGGAATACCTGGCAAACCAGGCCCCAAGGTAAAGATCTCCCTTATAAAATCCAAATCTGTCTCGGTCAAATGGTATTTTGCAAATGGGTCAACTGTGCTGGGGACAGGGTGCGATGCAAATCATCTCCTTGTCTTGTAAATCTAACATATATCACTTAATAAAGT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa12650
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000103004 Nonsense 751 780 26 26
Genomic Location (Zv9):
Chromosome 13 (position 1656787)
Other Location(s):
Assembly Chromosome Position
GRCz10 13 1650297
GRCz11 13 1781588
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TGACRTCTGGATGCGCCTTGCTTAATGCTACTTTAAGCAGACCTCCACAA[C/T]AAGTGCCCGAGCAGRCGCCGCAACGAGCATCYCAACRGGCACCTCAACGR
Long Flanking Sequence:
ATTTTACATTTGATTATTCAATTTCTAAATACTGTAATGTAAAATATTTCACTCCCAATCTTCTTCCCAATAATAACAATCCCATAATCTTCCAGAATAACCTCAATCAGTCTAGATGAATGAATTCTTTACAAATAAATTCATGCTATCTGGTAAAATTGTATATTTAAATATACAAAAATTGCAGCAAAACCAAATATCACAATGTCAAATGTTTCCAATATAGTGCAGCCCTCGCATCTCTTGTCATGAAATCCCCTATTAGTCTAACTTCAAATGTTAGTAGAGATTTTTAATTATTATTAAATGCTCTTTTTTTATAACTAGGTCAGCGTGGCCGACCAGGCCGAGCTTTTGATGGGCAACCAGGTCAGATGGGTGAGAGAGGACATGTTGGCCAGCCTGGATTACGGGGACACCCTGGACTACCAGGAGTTCCTGGAGTCTGTCTGACGTCTGGATGCGCCTTGCTTAATGCTACTTTAAGCAGACCTCCACAA[C/T]AAGTGCCCGAGCAGGCGCCGCAACGAGCATCCCAACGGGCACCTCAACGGGGATCTCAACGAGGATCTCAGAGGTTTAGAGGACGCCAGTGAAAGCTTTCTTGAAAATCACACAGAGACGTTTTGGTCATTGTGTGCATAGTATGGAGGAGGGATTAGAAGCTGAAATTGTGTCAGGAAAGGTAAACGATGTAAATATAAAATCAAAACCAAATATTTGTCCATCAAAAGACTCTAACACTGTCAAATGCAAAGCTGTCAGAAGAACTTTTGGAAGTAGGGTTACATATATAGTTTAAATACATATATAGTCAAAATGACCAGCACATTGATCAAGTTAATGTTTAAAGTATGTTTATAATAAAAAGGACACAAATTAATATATTTTTTACATGTTATCTGCATTTTTCGCCCTTAAAATTGACTGGGGGTTCAGAAATAAATTTTAAATATGGTCTGTAGTGTGTAGTTTCTTACAATCACAAGACAAAAATCACCTTT
Associated Phenotype:
Not determined