Busch Lab

ZMP

si:dkey-175g6.5

Ensembl ID:
ENSDARG00000003984
ZFIN ID:
ZDB-GENE-091204-127
Human Orthologue:
LTN1
Human Description:
listerin E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:13082]
Mouse Orthologue:
Ltn1
Mouse Description:
listerin E3 ubiquitin protein ligase 1 Gene [Source:MGI Symbol;Acc:MGI:1926163]

Alleles

There are 5 alleles of this gene:

Allele Name Consequence Status Availability
sa21729 Essential Splice Site Available for shipment Available now
sa21730 Nonsense Available for shipment Available now
sa41656 Nonsense Mutation detected in F1 DNA Not yet available
sa13774 Nonsense Available for shipment Available now
sa1642 Essential Splice Site F2 line generated Not yet available

Mutation Details

Allele Name:
sa21729
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000022170 Essential Splice Site 116 1751 3 30
ENSDART00000135890 Essential Splice Site 116 1749 3 30
Genomic Location (Zv9):
Chromosome 10 (position 23361876)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 23133169
GRCz11 10 23102621
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AAAAGGTGTCCTGCCATACTGGCCTCGGATATACTGCCGGATATCGATGG[T/C]AAATATTTAATCATTATAGTTATACATTCGTAAATATGTAATACATCGTT
Long Flanking Sequence:
TTTTCAGCTTAGTCCATTTATTAATCTGGGGTCGCCACAGTGAAACTGAACCAACAACTTTTCCAGTACATGTTTTATGCAGCGGATGTACACACTCATAAACTACGATTTTCTGGGACAATTCAACCTACCCAATTCACCTGTACCGCATGTCTTTGGACTGTGGGGGAAACCGGAGCACCCGGCGGAAACCCACGCGAACGCAGGGAGAACATGCAAACTTTACACAGAAATGCCAACTGACCCAGCCGAGGCTCGAACCAGTGACTTTCTTGCTGTGAGGCGACAGCACTGCCTACTGTGCCACTGCGTCGCCCTACATGCAAATTATTTATCGAATTTTGATTTAACCGACTTAATAACTGAATGTTTTATAAATGTTGGTAAACATGTATTTCAGGCAGTACAAGAGTTTGGAGCAATGTGTCAAGAGCGGCAGACTGATGTTGTAAAAGGTGTCCTGCCATACTGGCCTCGGATATACTGCCGGATATCGATGG[T/C]AAATATTTAATCATTATAGTTATACATTCGTAAATATGTAATACATCGTTATTTTTAGGCTAATTTATTAATTTATTATGTTGAATGTATCATTTTTAACTTTTGTTTACTGTTCGGGATGTTTTCATCCACTCTGGGGTGATTTTTGAGTTGAAATTTGGCCACAACTTTCTCTGTTTCAGCAAATAGAATGATTTTTGGTTACAAATCCTATCTAAAGGGTTAATTGTGCCAACAGTAAAAATGGCAAATCTGACCTCTTTCCAATAAGGAAAACCACCAACAGTCAAGAATATGCATGATTAATTGGTGTCATGGCTTTGCAATCAAAAATAATGCTATAATTAAAGTCAATAGGGCAAAAACAGCCACCAATATATAAAAAGGGTTGTAAATTTGATCAATACACAAAGGTTAATAAAATTGTATTAAATTTGAAAAACTCTTTTTTTTTATGTTTTTTTTTCATCTCACTGTATGTAAAGGCAGCTAGAAGCTTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa21730
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000022170 Nonsense 1023 1751 17 30
ENSDART00000135890 Nonsense 1023 1749 17 30
Genomic Location (Zv9):
Chromosome 10 (position 23376037)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 23147330
GRCz11 10 23116782
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TTTCACCAATACTTTTTTATTGTGTAGTTTCAGAGATTTTTTATGGCCTG[C/T]AGTGGTGTGAAGAAATGGAGTTTTCACCCCTCACAGTGTCTGAATATCAT
Long Flanking Sequence:
TATTATATTATATTATATTATATTATATTATGTATATTTATTATATTTATTATACAAAGCAAATGACAAAGCAAAATTTTACCTAATCCTTAGTTTGACACAACCCTTCAGAAATCATTCAGTGTAGTAATTTTGTGCTTAAGATTAATTTTTTCTGAAATCTTCCTGAATTGAATGATTGGCTTTAATTTAAAATTATAACAATATATATATATATATATATATATATATATATGTATATGTGTATATATATATATATATATATATACACACACACATATATATATATATATATATATATATATATGTATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATATATTTTTTTATTTTATTTTACTTGTATACATTTGTGTCATTGTTGAGCAGCATGGTTTAGATGGACAAATTTATGAGCTGTTAAAACTTTGTTTGCTGATGATTTTTCACCAATACTTTTTTATTGTGTAGTTTCAGAGATTTTTTATGGCCTG[C/T]AGTGGTGTGAAGAAATGGAGTTTTCACCCCTCACAGTGTCTGAATATCATAAATTGCTCCAGTCCTGGAGTTTGGAACAGAAAATTCACAATATCAGCCTGATCAAATCCGCTCTTACAGACACACTTTTTACAAGGTGAAATTATATACCCCCCAGAAATTTACGTTTTAAATACTAATAGCATTGCATATGTATATACCTTTAATTTGTTTTGAATTAGCACTTTTTATATACCCTTGTATCTTTTTTTTAATTACAGATCACAAGAAAATGGATCTCTCTGGTCACTGTGTCTGGCGAAATACTTGCAAATCAATAAAATGGACCCAGGTGACATCAAAGGCTTATATGGAAGTGTTGAAAGGTAATCATCTCCCCAAAACTCCCAATATGTAATTTTTTCCCCCACTAACAAAAAAATAATTTTAAGTTGTACTAATGTTCAGTAGTTTGGGTAAATGGCTTTGTTTTTTTAAAAGAAATTTACTAAATTTATTGA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa41656
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000022170 Nonsense 1076 1751 18 30
ENSDART00000135890 Nonsense 1076 1749 18 30
Genomic Location (Zv9):
Chromosome 10 (position 23376321)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 23147614
GRCz11 10 23117066
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ACCCTTGTATCTTTTTTTTAATTACAGATCACAAGAAAATGGATCTCTCT[G/A]GTCACTGTGTCTGGCGAAATACTTGCAAATCAATAAAATGGACCCAGGTG
Long Flanking Sequence:
TATATATATATATATATATATATGTATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATATATTTTTTTATTTTATTTTACTTGTATACATTTGTGTCATTGTTGAGCAGCATGGTTTAGATGGACAAATTTATGAGCTGTTAAAACTTTGTTTGCTGATGATTTTTCACCAATACTTTTTTATTGTGTAGTTTCAGAGATTTTTTATGGCCTGCAGTGGTGTGAAGAAATGGAGTTTTCACCCCTCACAGTGTCTGAATATCATAAATTGCTCCAGTCCTGGAGTTTGGAACAGAAAATTCACAATATCAGCCTGATCAAATCCGCTCTTACAGACACACTTTTTACAAGGTGAAATTATATACCCCCCAGAAATTTACGTTTTAAATACTAATAGCATTGCATATGTATATACCTTTAATTTGTTTTGAATTAGCACTTTTTATATACCCTTGTATCTTTTTTTTAATTACAGATCACAAGAAAATGGATCTCTCT[G/A]GTCACTGTGTCTGGCGAAATACTTGCAAATCAATAAAATGGACCCAGGTGACATCAAAGGCTTATATGGAAGTGTTGAAAGGTAATCATCTCCCCAAAACTCCCAATATGTAATTTTTTCCCCCACTAACAAAAAAATAATTTTAAGTTGTACTAATGTTCAGTAGTTTGGGTAAATGGCTTTGTTTTTTTAAAAGAAATTTACTAAATTTATTGAAAAATGTTTTAAATGGAAAATGGCAGGTAATATTATAAAATAATATTACAAACTCAAATAACAGTTTATATATATATATATATATATATATATATATATATTGCTTAAGAAATATTTCACGTTTTAAACACCAGTGCAGCTTTACATATTTTGTGTAAATCCAGCTTTTTTTTAGCTTTCTGTACAATCATATTTGTTTAATGCATCATTGCTAAATAAAAGTGTTTCTTTATTAATATATAAATTATACATAATCCTACTGTATGCAGCCATAAAAGCTGATT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa13774
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000022170 Nonsense 1133 1751 19 30
ENSDART00000135890 Nonsense 1133 1749 19 30
Genomic Location (Zv9):
Chromosome 10 (position 23377850)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 23149143
GRCz11 10 23118595
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GGTGCTCTGTCCGTTTCTAGCCAGCGAAGACAGAGAATCCCTCATYGCCT[T/A]GTGTGTYGCAGAGCTACTCAACTGGCAGGACCAAGAGCACGACTGCAGTG
Long Flanking Sequence:
TTTTATAGTTATTTTAAAATATTAAAAAATAAATTAGGAAATTACCTCTGGCAACTATATTTACCTTTGACCCACTAGCCTCAATTAAGGTTGGCTTTTGGCCCTTCATAAGGAAATGTTTGGGCGCTCTTGAAATAGAACAACTAAATGTGCTACTTTGTTACTTTTATGGAAATTAATGTTTTTCTTAATTTTTTTCTTCTTCTTTTATTGATAGTATTATTAGATATTAGATTGTAATATATTACATTTAAAATTAACCTTTCCCTACAGTGAACCAGCTCCTGTTCAGACAGCCTTTAACACAGTGTTTTGCTAAACCAGGGAGTAGTTGGTTGTGACATTCCTACTAATTCAGTGGCTTGTTTGTGTGTGTTTGTGTTTGTGTTTGTGTGTGTGTGTGTATGTCAGTTTCTTTCCCCTCTCAGAGCACAGTGTGAATACTCTGCAGGTGCTCTGTCCGTTTCTAGCCAGCGAAGACAGAGAATCCCTCATCGCCT[T/A]GTGTGTCGCAGAGCTACTCAACTGGCAGGACCAAGAGCACGACTGCAGTGATGGTGAGACTCAAAAAACACACACACACACACAACACGCCATGAGTCATATAGGCTGAGTATAATGTGTGTGTGTGTAGGTGTGCTGTGCTGTCTGGCGGTGTTGCTGTGCTGTCTGCAGGCTGATGCTGCTGTGGAGGATGAGATTCTGCTGGCTGTCGTCAGCACGATCGCTGAATGGAGGAACAGTAGAGAGGAGTGGTTCCTCTTCAACAGGTGAGCATGTGTGTGTGTCACTGTAATGAGGAGGACCGTGATGGCAGTCATGTTTATAATGACAGAGCTGTGGTCACTGTGCTTATGTAGGGGACAGGGCTGGACTGGGGCAAAAAATCGGCCCTGGCATTTTGGGCCAGAGCGGCCCACTAAATTCAATCAAAATGCTATCTATCTATACACGTCCAATATTTTTATCAACTCATATTCTATAAAACACAAAAGCCATATTTA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa1642
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000022170 Essential Splice Site 1731 1751 29 30
ENSDART00000135890 Essential Splice Site 1729 1749 29 30
Genomic Location (Zv9):
Chromosome 10 (position 23397038)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 23168331
GRCz11 10 23137783
KASP Assay ID:
554-1582.1 (used for ordering genotyping assays)
KASP Sequence:
CAAAGAAAGCTTGCCGTACCTGCAAAAAGAAGTTYCACTCCGCCTGTCTA[G/A]TGAGTGCCACACACACACACACACACACACACACACACACACACACACAC
Long Flanking Sequence:
TCTGTTTTCAATAAAGTTTCAAATGTTTGCTGAATGCTCCTGCAGAATAAGCATAAAACTCCAGTAGAAAACTGCTGCTCCATCTTTCTTACTTGTCGCCAAAGGCAACCGCGTAATAATAACTTAAAACAGTCCAATACAAAACAGCACAAACCATCGCTAATAAATAGGTGGACAAAAATCAACAAATGTCCCCATAAACTAAACATATCAGCTTATGTATTTCAAGCATTTGAATAATAGATAATGAATAAATTGCAATATATTCTTAAAGTATGAAGAACAACTGAAAATGTCCAAACTAATTGAGGCAATGTGCTTGTGTTTGCTAGAATGGTAGTATACTGGAGGGTCTGTCGCTGTGGAAGAACAATGTTGACAAGCGTTTTGAGGGGGTGGAGGACTGTATGATCTGCTTCTCTGTCATTCATGGATCCAATTACTCGCTGCCAAAGAAAGCTTGCCGTACCTGCAAAAAGAAGTTCCACTCCGCCTGTCTA[G/A]TGAGTGCCACACACACACACACACACACACACACACACACACACACACACACACACACAATATCATGCTCTGCCATCGTTCTTATTTTTAGATGAATGTTTGTAAAACAGATCAGTCTTGATGTTTTAGGAACATACATCGGTTAAAGTGAACATGAAACTCATTCTGCTTCTGTAATTCAGAATATTCAGCTGAATTCACACAGTAATCAGACTCAATTGTAATGTTCATACTGATATCAAAGCCCTGTAGAAGGTCACCGGTGCACTTGAAATTGAATCATTTCCCCTATACAGTCTTTCTCCATTTATTGCTTTAATTCTGCAGATGTTTCAGTATCAGCAAAAACACGCAGCCTTGAATGTTCTCAAGCGCTTCTCGTTCCTCACTGACCGCTTGTTTCCATTTCCTTTCATTCCACAGTATAAATGGTTCACGTCTAGCAACAAATCCACGTGTCCTCTTTGCCGAGAGACTTTCTTCTAAACTCTGTCTCCATG
Associated Phenotype:
Not determined