Busch Lab

ZMP

lrrtm4l1

Ensembl ID:
ENSDARG00000080015
ZFIN ID:
ZDB-GENE-080327-15
Description:
cDNA, clone cssl:d0341 [Source:UniProtKB/TrEMBL;Acc:A8BB40]
Human Orthologue:
LRRTM4
Human Description:
leucine rich repeat transmembrane neuronal 4 [Source:HGNC Symbol;Acc:19411]
Mouse Orthologue:
Lrrtm4
Mouse Description:
leucine rich repeat transmembrane neuronal 4 Gene [Source:MGI Symbol;Acc:MGI:2389180]

Alleles

There are 6 alleles of this gene:

Allele Name Consequence Status Availability
hu3329 Nonsense Available for shipment Available now
sa11361 Nonsense Available for shipment Available now
sa44722 Nonsense Mutation detected in F1 DNA Not yet available
sa21708 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
hu3329
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
T > G
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000113737 Nonsense 187 571 2 3
ENSDART00000141364 Nonsense 187 456 2 2
Genomic Location (Zv9):
Chromosome 10 (position 19369203)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 19381549
GRCz11 10 19338983
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GTCCGTGCGTTTTTGGAGTGCCGAAGCTTGGAGTTTCTAGACTTGGGCTA[T/G]AATCGGCTTCGGGTTCTAACTCGCACAGCATTCCTAGGTTTGTCTCGACT
Long Flanking Sequence:
CTCCTGCTGTTCAGTTCTGGGGAACGAATGTGCCCCTATAGCTGTCATTGTGAGGGAAAGATTGTCCACTGTGAGTCGTCTGCCTTCCAGGACGTCCCAGAAAATATTTCAGTTAGTTGCCAAGGTCTGTCTCTGCGCTACAATGACCTGCACACAATGCTCCCTTACCAGTTTGCCCATCTCAACCAGTTGCTTTGGCTTTACCTGGACCACAATCAAATCATGTTCGTTGATAGTCGTGCTTTCCAGGGGGTGCGGCGATTGAAGGAGTTGATCTTGAGCTCGAACAGGATTTCACAGCTCCACAATGTCACATTCCATGGAGTACCTAACCTTCGTAGTCTCGATCTGTCCTATAACAAGTTGCAGGAGTTGCAGCCTGGCCAGTTTTATGGTCTTCGAAAACTGCAAAATCTGCACTTGCGTTCAAATGGGCTTACGGCAATCCCTGTCCGTGCGTTTTTGGAGTGCCGAAGCTTGGAGTTTCTAGACTTGGGCTA[T/G]AATCGGCTTCGGGTTCTAACTCGCACAGCATTCCTAGGTTTGTCTCGACTTATGGAACTCCACCTGGAACACAATCAGTTTTCACGAATCAACTTCTTTCTCTTTCCACGCCTTGCCAACCTTCGAGCCCTTTACCTACAGTGGAACCGTATTCGAGCTGTCAACCAAGGCCTTCCGTGGAGCTGGTATACCCTGCAGAGGCTTGACATCTCTGGCAATGAGATACAGGTACTAGATCCTGTAGTCTTTCAATGCCTTCCCAATCTTCAGGTTCTCAACTTGGAGTCTAACAAACTCGCCAATGTCTCTCAGGAAGTTGTGGCTGCCTGGATCTCACTAACAACTATTAGCCTTGCAGGCAATATGTGGGATTGTGGTCCGGGTATTTGTCCTCTTGTTGTCTGGCTCAAGAATTTCAGAGGCACCAAGGACACTAATATAATCTGCAGCAGTCCCAAACACCTTCAAGGGGAAAAAGTCATTGAGGCTTCAAAGAACTA
Associated Phenotype:
Normal
Stage Entity Quality Tag
Larval:Day 5
ZFS:0000037		 whole organism
ZFA:0001094		 quality
PATO:0000001		 normal
PATO:0000461

Mutation Details

Allele Name:
sa11361
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000113737 Nonsense 229 571 2 3
ENSDART00000141364 Nonsense 229 456 2 2
Genomic Location (Zv9):
Chromosome 10 (position 19369327)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 19381673
GRCz11 10 19339107
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ATCAGTTTTCACGAATCAACTTCTTTCTCTTTCCACGCCTTGCCAACCTT[C/T]GAGCCCTTTACCTACAGTGGAACCGTATTCGAGCTGTCAACCAAGGCCTT
Long Flanking Sequence:
GTCTGTCTCTGCGCTACAATGACCTGCACACAATGCTCCCTTACCAGTTTGCCCATCTCAACCAGTTGCTTTGGCTTTACCTGGACCACAATCAAATCATGTTCGTTGATAGTCGTGCTTTCCAGGGGGTGCGGCGATTGAAGGAGTTGATCTTGAGCTCGAACAGGATTTCACAGCTCCACAATGTCACATTCCATGGAGTACCTAACCTTCGTAGTCTCGATCTGTCCTATAACAAGTTGCAGGAGTTGCAGCCTGGCCAGTTTTATGGTCTTCGAAAACTGCAAAATCTGCACTTGCGTTCAAATGGGCTTACGGCAATCCCTGTCCGTGCGTTTTTGGAGTGCCGAAGCTTGGAGTTTCTAGACTTGGGCTATAATCGGCTTCGGGTTCTAACTCGCACAGCATTCCTAGGTTTGTCTCGACTTATGGAACTCCACCTGGAACACAATCAGTTTTCACGAATCAACTTCTTTCTCTTTCCACGCCTTGCCAACCTT[C/T]GAGCCCTTTACCTACAGTGGAACCGTATTCGAGCTGTCAACCAAGGCCTTCCGTGGAGCTGGTATACCCTGCAGAGGCTTGACATCTCTGGCAATGAGATACAGGTACTAGATCCTGTAGTCTTTCAATGCCTTCCCAATCTTCAGGTTCTCAACTTGGAGTCTAACAAACTCGCCAATGTCTCTCAGGAAGTTGTGGCTGCCTGGATCTCACTAACAACTATTAGCCTTGCAGGCAATATGTGGGATTGTGGTCCGGGTATTTGTCCTCTTGTTGTCTGGCTCAAGAATTTCAGAGGCACCAAGGACACTAATATAATCTGCAGCAGTCCCAAACACCTTCAAGGGGAAAAAGTCATTGAGGCTTCAAAGAACTACATTGACTGTGATGATTATGAAATTACCGCTCAATCTCCTTTGTATCTGCAGACGTTTGATCCAAATTATGACCTTGCTCTTGAACCAACTGAACCAACAATGGCTCCTACCACACCGCCACCA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa44722
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000113737 Nonsense 235 571 2 3
ENSDART00000141364 Nonsense 235 456 2 2
Genomic Location (Zv9):
Chromosome 10 (position 19369346)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 19381692
GRCz11 10 19339126
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CTTCTTTCTCTTTCCACGCCTTGCCAACCTTCGAGCCCTTTACCTACAGT[G/A]GAACCGTATTCGAGCTGTCAACCAAGGCCTTCCGTGGAGCTGGTATACCC
Long Flanking Sequence:
TGACCTGCACACAATGCTCCCTTACCAGTTTGCCCATCTCAACCAGTTGCTTTGGCTTTACCTGGACCACAATCAAATCATGTTCGTTGATAGTCGTGCTTTCCAGGGGGTGCGGCGATTGAAGGAGTTGATCTTGAGCTCGAACAGGATTTCACAGCTCCACAATGTCACATTCCATGGAGTACCTAACCTTCGTAGTCTCGATCTGTCCTATAACAAGTTGCAGGAGTTGCAGCCTGGCCAGTTTTATGGTCTTCGAAAACTGCAAAATCTGCACTTGCGTTCAAATGGGCTTACGGCAATCCCTGTCCGTGCGTTTTTGGAGTGCCGAAGCTTGGAGTTTCTAGACTTGGGCTATAATCGGCTTCGGGTTCTAACTCGCACAGCATTCCTAGGTTTGTCTCGACTTATGGAACTCCACCTGGAACACAATCAGTTTTCACGAATCAACTTCTTTCTCTTTCCACGCCTTGCCAACCTTCGAGCCCTTTACCTACAGT[G/A]GAACCGTATTCGAGCTGTCAACCAAGGCCTTCCGTGGAGCTGGTATACCCTGCAGAGGCTTGACATCTCTGGCAATGAGATACAGGTACTAGATCCTGTAGTCTTTCAATGCCTTCCCAATCTTCAGGTTCTCAACTTGGAGTCTAACAAACTCGCCAATGTCTCTCAGGAAGTTGTGGCTGCCTGGATCTCACTAACAACTATTAGCCTTGCAGGCAATATGTGGGATTGTGGTCCGGGTATTTGTCCTCTTGTTGTCTGGCTCAAGAATTTCAGAGGCACCAAGGACACTAATATAATCTGCAGCAGTCCCAAACACCTTCAAGGGGAAAAAGTCATTGAGGCTTCAAAGAACTACATTGACTGTGATGATTATGAAATTACCGCTCAATCTCCTTTGTATCTGCAGACGTTTGATCCAAATTATGACCTTGCTCTTGAACCAACTGAACCAACAATGGCTCCTACCACACCGCCACCACCCCTGCCATCCCCCGCCT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa21708
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000113737 Nonsense 357 571 2 3
ENSDART00000141364 Nonsense 357 456 2 2
Genomic Location (Zv9):
Chromosome 10 (position 19369713)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 19382059
GRCz11 10 19339493
KASP Assay ID:
2260-3115.1 (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CACCTTCAAGGGGAAAAAGTCATTGAGGCTTCAAAGAACTACATTGACTG[T/A]GATGATTATGAAATTACCGCTCAATCTCCTTTGTATCTGCAGACGTTTGA
Long Flanking Sequence:
CGGGTTCTAACTCGCACAGCATTCCTAGGTTTGTCTCGACTTATGGAACTCCACCTGGAACACAATCAGTTTTCACGAATCAACTTCTTTCTCTTTCCACGCCTTGCCAACCTTCGAGCCCTTTACCTACAGTGGAACCGTATTCGAGCTGTCAACCAAGGCCTTCCGTGGAGCTGGTATACCCTGCAGAGGCTTGACATCTCTGGCAATGAGATACAGGTACTAGATCCTGTAGTCTTTCAATGCCTTCCCAATCTTCAGGTTCTCAACTTGGAGTCTAACAAACTCGCCAATGTCTCTCAGGAAGTTGTGGCTGCCTGGATCTCACTAACAACTATTAGCCTTGCAGGCAATATGTGGGATTGTGGTCCGGGTATTTGTCCTCTTGTTGTCTGGCTCAAGAATTTCAGAGGCACCAAGGACACTAATATAATCTGCAGCAGTCCCAAACACCTTCAAGGGGAAAAAGTCATTGAGGCTTCAAAGAACTACATTGACTG[T/A]GATGATTATGAAATTACCGCTCAATCTCCTTTGTATCTGCAGACGTTTGATCCAAATTATGACCTTGCTCTTGAACCAACTGAACCAACAATGGCTCCTACCACACCGCCACCACCCCTGCCATCCCCCGCCTCAGAGGCACCTTTTCCTCCTCCCCAGCCTCGCCCACCTCATCGCCCCACCTTTCCCAGTCGTACAAACACAGATCCCAGAGACTCTCATCAACGGACACCTTCATCTTTTGACAGCTCATTAGTGACACCAGTTCCTGAGCAAGACAACGTGTCATTTCACAAAGTGGTTATGGGTGGTGTGGCACTATTCTTCTCAGTGTCCCTTGTTTTGTCAGTAATATATGTCTCCTGCAAACGTTACCCTGGCGCCACTCGGCTGTTGCAGCAGAGTTCAGTGGGCCGAAAGCGAAGGAAAAAAAGTCAGGAGCCAGAGCAGAACCTGAGCTCCCAGCTCCAGGAATATTACATGAGCTACAACCCCGCCGC
Associated Phenotype:
Not determined