ZMP
nup88
Ensembl ID:
ZFIN ID:
Description:
nuclear pore complex protein Nup88 [Source:RefSeq peptide;Acc:NP_001018302]
Human Orthologue:
NUP88
Human Description:
nucleoporin 88kDa [Source:HGNC Symbol;Acc:8067]
Mouse Orthologue:
Nup88
Mouse Description:
nucleoporin 88 Gene [Source:MGI Symbol;Acc:MGI:104900]
Alleles
There are 4 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa20553 | Nonsense | Available for shipment | Available now |
| sa2206 | Nonsense | Available for shipment | Available now |
| sa20552 | Essential Splice Site | Available for shipment | Available now |
| sa9811 | Nonsense | Available for shipment | Available now |
Mutation Details
Allele Name:
sa20553
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000023123 | Nonsense | 180 | 720 | 4 | 17 |
Genomic Location (Zv9):
Chromosome 5 (position 60806192)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 5 | 58438319 |
| GRCz11 | 5 | 59108028 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GTACTGGATTATACAAAGTATGTTTGTTTGTTTTTTACCACCAGATTTTA[T/A]AATCTTAAGGAGCCCCAGTCCCCTGCTAGAGTTTTATCTGTGTCTCAGAT
Long Flanking Sequence:
TACTATGTAGATATCAGAAAACAATTTAAGTTATTAAAACAATGCAATATACGAGACCTTTATTGTAATCGTTTGTGTTAAATCTGTTAATTATTTCTTGTAAGTGTGATTGTCATGTTAGGCATCTATAAATAAAATTAAATAATGATAATCTAACCATTCATCAGAGTAAAATAACTCTTTAAGAGAGTTGCATTGCTCTTCCATCCTCCTTTTTTGTTTTAGATTCTCTGGTTTTAAACGTTTTCTTTTGACAGGACCATTCCGGTGGCTGAACGCTTCTTCACCAGTTCTGCGTCTGTGACTCTTCGTCAAGCTGTCTGGTATCCCAGTGAAACTGAGGAGCCTCATCTCGTTCTGCTGACCTCAGATAACACCATCAGGTATCTGAAATTAATCCCTGACAGAAGTCTGAGAGATCTGACTCTGAAGAGCTTCACTGTTCATTTTGTACTGGATTATACAAAGTATGTTTGTTTGTTTTTTACCACCAGATTTTA[T/A]AATCTTAAGGAGCCCCAGTCCCCTGCTAGAGTTTTATCTGTGTCTCAGATGGATGATGACAGCAGCGTCCATACAAGAAGGTAAGCGTGTAGCTGCTATATTTTTCATTTTATCCAACGGTATTGCCAGACGCTAGGAGTATTCTGCTTGGATCAGGGTTATTAAACACAAAGGTAAATCTAGGGATGAACCGAAATGAAAATTCTTGGCATAGTATGGGTCAAAGTCATTGATTTTTCTTTTATTCCTTTTATTTAACTTTAGAATATTAAGTCAAGAAGATCATGTTCTTTAAAGATATTTAATAAGTTTTCTACATCAAATTTCAGTTTTTGATTAGAAATATGCCTTGCTAAACGCTTCGATCAAGTGATTTTTTTTTCAGACGTCATATTGGATGTACAAGATTAAAGGGTCACGAAACACCAAAACACATTTTTTGAGCTGTTGACAGTCGTATATGTGTCCCACACTGCTAAAAACACTATTAGGACACCTAT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa2206
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000023123 | Nonsense | 244 | 720 | 5 | 17 |
Genomic Location (Zv9):
Chromosome 5 (position 60801222)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 5 | 58433349 |
| GRCz11 | 5 | 59103058 |
KASP Assay ID:
554-2590.1 (used for ordering genotyping assays)
KASP Sequence:
GATTCTCCTCACCTGAGCAGTCTGCGAATGAAGGCAGAGCTGGTGGTTTA[T/A]CCACTYTACATACTATACGGCAATGGAGAGACCTTTCTGAACTACATCTC
Long Flanking Sequence:
TCAAGGAATCACTAAAATTACTAATACTTTTAAATCAGGCACCTTAATTCACACCTCCAGCATGTAAAGCACCATGAAAGCCATTCATTTTGCTTACACTTAATATCCACATTAAAATGTTATAATAATGGTGATGTTCTGAATGTTATTTTCACAAATGTAGACTGTTTTAAACATTAATGTTCAAATAACCTTAAATAATACAATTAGTTGAATTTAATACTGATAATATTCAAATGTGATTACTGAAATATTGATAATGCATTGTTTGTCATAGTTCTAGATTTTTACTGTGGGAACCCTGTAAATATTAATATAAATGAATAATAGTACATTAATGATACTAAAATAACACTGACTTCATATGATGTGACATCTTCTTCATGCAGTCGTTCTTATGCGGCCTCTTTGGGAGAGACGGCGGTGGCTTTTGACTTTGGTCCGTTGGCTGATTCTCCTCACCTGAGCAGTCTGCGAATGAAGGCAGAGCTGGTGGTTTA[T/A]CCACTTTACATACTATACGGCAATGGAGAGACCTTTCTGAACTACATCTCTCTCTCACACAGGTAACACTCACTCCTATACAAAAAAACCAAACATGTTCATTCAGATAACAGATATGCAACATCATTTACAGTGTAGGTGAATATTATCAAAACCAAAATAATAAGGTAAAAAAAAATGGCTTATAAAAATTTAAGATCATTTAAAGCACTAAGTGGGTTTTTTTATCTTGTTGTTAACTTAAGCTAAATTAAACTTGTAGTTCACCTTAAATGAACTAACTTAAGTGCTAACTTGAGCTATTTATGTTTAAGTGCTAATATTAAGTAATTTTAATAATTATAATAATAATATTTTTAACGTTTTTTGTGTGTTGTGATGTTATGTGGCAAATAAATTTCACCAAGGGGACTTATAAGGTTAATAGAATTTTAAAAAATTTATAAAATAAAATAAAAGCTGAAATCGAAAACTGAAATTGTTCTAAAAATAAACTAAAG
Associated Phenotype:
This allele has been associated with this phenotype by genetic linkage analysis and may not be causal.
See FAQs for more info.
See FAQs for more info.
| Stage | Entity | Entity | Quality | Tag |
|---|---|---|---|---|
| Larval:Day 4 ZFS:0000036 |
eye ZFA:0000107 |
decreased size PATO:0000587 |
abnormal PATO:0000460 |
|
| Larval:Day 4 ZFS:0000036 |
gut ZFA:0000112 |
quality PATO:0000001 |
abnormal PATO:0000460 |
|
| Larval:Day 4 ZFS:0000036 |
head ZFA:0001114 |
decreased size PATO:0000587 |
abnormal PATO:0000460 |
|
| Larval:Day 4 ZFS:0000036 |
liver ZFA:0000123 |
hypoplastic PATO:0000645 |
abnormal PATO:0000460 |
|
| Larval:Day 4 ZFS:0000036 |
melanocyte ZFA:0009091 |
quality PATO:0000001 |
abnormal PATO:0000460 |
|
| Larval:Day 4 ZFS:0000036 |
swim bladder ZFA:0000076 |
aplastic PATO:0001483 |
abnormal PATO:0000460 |
|
| Larval:Day 4 ZFS:0000036 |
whole organism ZFA:0001094 |
anterior/posterior axis BSPO:0000013 |
increased length PATO:0000573 |
abnormal PATO:0000460 |
| Larval:Day 4 ZFS:0000036 |
yolk ZFA:0000084 |
increased size PATO:0000586 |
abnormal PATO:0000460 |
Mutation Details
Allele Name:
sa20552
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000023123 | Essential Splice Site | 327 | 720 | 6 | 17 |
Genomic Location (Zv9):
Chromosome 5 (position 60799972)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 5 | 58432099 |
| GRCz11 | 5 | 59101808 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GCTGTATCACTGTGTGGTGCTGGAGGCAGAGGAAGAGGAGGATGGCGGAG[T/A]AAGACATCCACAATTCAGCCATAAATCAGCTGATGCACGGTAAGAGATGC
Long Flanking Sequence:
ACGAGTTTACACAGAGGAAGATCTGGTACTCAGAATTGGCCAATCACTATGACAAAGAATTGGTACTTAGTATCGGCTGCAAAAATCCTGATCGCAGCATCCCTAAATATAATATAATATAATATCATATAATATCATATAATATAATATAATATAATCGTAAAAAGCACTTAAAATTGAAAGAGAGAAGCCGTGTCTTATGGAATTTTCTATGCCATTTTTTTGTATAAATGGTCTGTTTTTATTCTAAAAAATGAATAAGTGCACTCTTAATACCCAGATTCAATTGTTAATCTTCCATCTTTCGCCTAGTGTCGGTAGTTTAGGGAAGCCGATGGGCCCGTTACCCATGTACCCTGCAGCAGAAGATAACTACGGCTACGATGCGTGTGCTGTGCTCTGCCTGCCTTGCGTGCCCAACATCCTGGTCATCGCCACTGAATCAGGAATGCTGTATCACTGTGTGGTGCTGGAGGCAGAGGAAGAGGAGGATGGCGGAG[T/A]AAGACATCCACAATTCAGCCATAAATCAGCTGATGCACGGTAAGAGATGCTGAATGTGTGTTTGCGTGTGTGTTCAGGCTGTAGAGAGATGGTCCAGAGGCTCAGAGACGGCACCTTCGCTCTACGTATTTGAGTGTGTGGAGCTGGAGCTGACACTTAAACTGCCTGCTGGAGAAGAGGAGGAGATTACAGAGTCAGACTTCACTTGTCCAATCAGATTACATCGAGGTGAGCAGACATAAACAGTCATAATCGTGTAATAATCCTGTATATTTATTTTCAAGTGTTTGTTTGAAATATTAGATAATTTCCTTGCATTTAATGTGCTTTCTTTGTTTTAGAGGTGTGAACCTATACTGGTCTCACGGTTCGGTTACGATTATCATGCCATCGATTCGGTTCAATTCGATATCTCGGTGCATCACTGTGCATTTACGGTGCTTCATTTACACACATACACAAACATAGACAGCACCAAACAAACACACTCACACTTAAGC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa9811
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000023123 | Nonsense | 693 | 720 | 16 | 17 |
Genomic Location (Zv9):
Chromosome 5 (position 60790597)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 5 | 58422724 |
| GRCz11 | 5 | 59092433 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ATCTCCGGCTCACTCCAGCCTCACTCTAAAYGCCCACCAGAGGAAGTGTT[T/A]GCAGGGAGTGCTGAAAGAACAGTACGTACACACACTTTACAASTGCYTTG
Long Flanking Sequence:
AACCATCATCATGTTATAGGTAGTGTTGACTTGATATAAGGGTCTTAAAACGTGTTAAACTTGACTTGGTGAAACCCCAAACTTAATTGAAAAATAATGACATGAGCTTTCTAAACTTTCTCCCCACTCTTTAAAAAAATATTGAAACTAAGCTGCAAAAATGTGTGTTGTACAGAGTAAAGCGGGTTTTGGGAAGTCTGCGGAGTCAACTTCCTGTGCTGTCAGACAGCGAGAAAGACATGAGGAAGGAACTGCAGACCATCAATGATCAGCTCCGTCACCTTGACAACGGCATCAAACAGGTCCGTTCTATGGTGGATCTTAGTTTATTTTTGCAGCACGCGCACCTTTGTTGCTACGAGCTGCGCGGACGCATGTTAATGTGCTGTTAATGTGTTGTCAGGTGAACATGAAGAAAGATTACCAGAAGAAGCAGATGAACGCGGGAGCATCTCCGGCTCACTCCAGCCTCACTCTAAACGCCCACCAGAGGAAGTGTT[T/A]GCAGGGAGTGCTGAAAGAACAGTACGTACACACACTTTACAACTGCTTTGGTTTCACACGTACATCACAGCTCTGAACTGTCAGTGCCAGCATTCATACTGTTAGATGCTTAAAAGTAGAGCTGCACAATGTATTGTTTCAGGATTGATATCGCTTCCATAATAGTCACATTGCCAGATGCAATGTTGATTAATAATCATAGTTAACCAGAGCTACAGAAAACTTGTGGTTTAACCATAATAGACTGAAAGTTTATCATTTGCAGAAGAGTTTAAAACATTGGGCGAGGGTTAGGTCGATAGACGTTGCTGTCGTCCATCGCCGATGGCCGATAGACATAAGGCTGAGCCGGCATCACGATCCTCCACCCAGCCCTCATCACAGCAGCAACCCACTTGTGAAAAATACACATTTTGGCCACATTTAGTACCGCTGGATATAAATACCGTGATATTTAATTAATCTTGTCTCTATCGAACGAATATATCAGATAACTTGTA
Associated Phenotype:
Not determined