Busch Lab

ZMP

snd1

Ensembl ID:
ENSDARG00000006766
ZFIN ID:
ZDB-GENE-030131-3124
Description:
Staphylococcal nuclease domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7ZT42]
Human Orthologue:
SND1
Human Description:
staphylococcal nuclease and tudor domain containing 1 [Source:HGNC Symbol;Acc:30646]
Mouse Orthologue:
Snd1
Mouse Description:
staphylococcal nuclease and tudor domain containing 1 Gene [Source:MGI Symbol;Acc:MGI:1929266]

Alleles

There are 6 alleles of this gene:

Allele Name Consequence Status Availability
sa33454 Nonsense Mutation detected in F1 DNA Not yet available
sa10166 Nonsense Available for shipment Available now
sa20260 Nonsense Available for shipment Available now
sa26284 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa6940 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa20259 Essential Splice Site Available for shipment Available now

Mutation Details

Allele Name:
sa33454
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000040405 Nonsense 47 913 2 24
ENSDART00000090972 Nonsense 47 911 2 26
ENSDART00000100974 Nonsense 47 574 2 15
Genomic Location (Zv9):
Chromosome 4 (position 18624850)
Other Location(s):
Assembly Chromosome Position
GRCz10 4 19701456
GRCz11 4 19690432
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GTTGTGCTATCATTGTTCGAGGTCAGCCACGAGGTGGACCTCCTCCAGAA[C/T]GACAGATCAACCTGAGTAACATAAGAGCCGGAGCTCTAGCCCGTCGTGCA
Long Flanking Sequence:
CTTTTGAAAAGCAAGAGAAACTGACTTCTGAGGGACTTGTGTACAAATATTTTGACTATACAGCATATTTATTATATATTATTTAGTATTTTAGAAGATATTTTTTTTCAGATGATGTTAGAGCATGTTTAATTCAGAAAATACTTCTAGGGAACTGTTTAAAAGGTCTCCTGAAAGCAGTAATATCTTGTCAGTTTTGTTGGTATCTGCGTGTTTTTACTATAATGCATGTTTATAAATAAACCTTTATGATTTTATATATTTTACTGAATATTTATTACCAATGTTGCCATAAATATAGCCAATGCTGTTGATATAGCATTAAAATGTGCTATAAAAACGTTTTTATTTCAGTTCCATATTGTTTTCTCGACAGTGAAAAGCTGGCATGGCATAAACGCAAACGAGCAAACTCACTATTTTAAATTTTTTCCTGGCAGGTGTTATCGGGTTGTGCTATCATTGTTCGAGGTCAGCCACGAGGTGGACCTCCTCCAGAA[C/T]GACAGATCAACCTGAGTAACATAAGAGCCGGAGCTCTAGCCCGTCGTGCAATTCAGGGTCAGCCAGACACCAAGGACACACCAGATGAGGTACTCTTCCATTCTGCAGAGTTGCTTTGTCTGTTCATTGATTTTTTTTTTTTTTAAAGGAACAAAAACATGTTCATTCATGAGGTATTTTTTGTTATATTTTGCTTGCGTTTTGTAATATTTTAAAATCCTAGGCCAAAGTGTTCACTTTTTGTTCACTGAAGTCTTTTTTAGTGTGTGTCTGTGTGTCTCAAAGTTTCAAACTTTCTTGGAAATTAATCTCACAGTGAATAAGTGATTAGCTAGTTTATAATATAGTTAAAAATGAAAATTCTCTTATTAATTACTCACCCTCATGTAGTTTCATACTCCTGATAACATCCTCAGAACACAAAATTAATATATTTTAGAAGAAATCCTGGAGCTCTCTCGTTCTGCATAGAAAGCAATGGTTCCAAGACATTCAATGAC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa10166
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000040405 Nonsense 178 913 5 24
ENSDART00000090972 Nonsense 178 911 5 26
ENSDART00000100974 Nonsense 178 574 5 15
Genomic Location (Zv9):
Chromosome 4 (position 18616050)
Other Location(s):
Assembly Chromosome Position
GRCz10 4 19692656
GRCz11 4 19681632
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
AAAAGGGCCTGTGGTCTGAGGGTGGAGGCTCGCACACCATTCGAGATCTC[A/T]AGTACACCATCGAGAACCCTCGCAAMTTYGTGGACTCCCTGCATCARAAA
Long Flanking Sequence:
ATCCCCACAAAAAAGTCTTTCAGTTAGTCTCTTCTCTTTAAATCAGTTCATTATGAAGTCCAGCGCCGCTTAAACTGATAGAGCCTTATTAAAAAAATCTGACGAGTATGTGCCGTGGTCAGACTGGCTAATTCCCCTTAAAGATAATGATGGCTTTTAGAACAACAGAGGATTTAATTGAAACATGTGTTGGCTTTTGATAATGAACAAACTCATTTGAAGAGCTTATCAAGGTTTGTGAAAGGGGGCAGCTCTGAGAGAGACACCTTAACGTCTGCAGCGCAACGCATTTCAAGTCCTCAGAGGAAAGATTTGGTTTTATTTTTAGCTCTCTGAACTCTTGCGGTAAGCTTTGCGCCATGTAATTTGATATTTGATTGATTTTTGTTGTGTGTTTCAGTCCTGAGCAGGTCAGACTGTGTGATTTGGAGGATCAAGCCAAGTCTTCTAAAAAGGGCCTGTGGTCTGAGGGTGGAGGCTCGCACACCATTCGAGATCTC[A/T]AGTACACCATCGAGAACCCTCGCAACTTCGTGGACTCCCTGCATCAGAAACCAGTCAACGGTAGGATGCGCTACACTTTGTTGATTACATTTTGTGCTCTTGTTCTCAAATGCTTAAGTAATCATCTCTATTGTTTGGGGTTGTGTTTACTGACGCATGTGGCGTTTTAAACTCTTCCTCTGCCAGCTTTTTTTTTCCTTTAAGTTGACAGCTACCACCAGCTTTTTTATGATATTCACAGTACTTTCTAGCAGTAATAGATCATGTTTTATATCAAAATAAAGAACCAAGCCTCTTTCAGTTTTTTTAATTTTATTTTTTATGCATTTTATTTTAAGTTCATGTTTTATTATCACTGGAATGCAGGTTTCATTAAAAAAAGCAACATTTTTGAATAAAGAAACCTAAACATACATATTTTAAGCTATATAGTAAATTTTTTAAGCTCTATAATACACAATACTAATTTTTACATTTACTAGAGATGAGTTGCGGCTGGA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa20260
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
G > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000040405 Nonsense 327 913 9 24
ENSDART00000090972 Nonsense 327 911 9 26
ENSDART00000100974 Nonsense 327 574 9 15
Genomic Location (Zv9):
Chromosome 4 (position 18599433)
Other Location(s):
Assembly Chromosome Position
GRCz10 4 19676039
GRCz11 4 19665015
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GCTCTCTTTAAAACCCTGCAGATCAGCAAAAGAGCGTAAAGTGAGAATTT[G/A]GAAGGACTATGTTGCTCCCACAGCCAATCTGGACCAGAAGGACAGACAGT
Long Flanking Sequence:
ACTTTATTGTTTTACGTTTAAGCCACTTACATTTGTTAAGATGGCATAATTAATTTGTGTTGGGACAACCAGCATGAATTGTGTGTTTTTTTTTTACTGTGCACGAACTAATAGATTTGAATATATGCTTCAAAACAATCCTATTTATGTGCTCAGTGTATCTAAACTATTAAATCGATTAAATTTACAGAAATCATACAATATCATCATCTATATCATAGTATTTTTATCTATCAGCCATACATTAGACTCTCTTAAACTGCGATTCACGTTTCAGCACAAAAGTTTACAAAACACAGCCATTCAAAACACAGGCCACGATCTTCACCCGCTGATTTAATGAAGCATTAAACACAATCACAAGCAAATATGATTGGAGCACATGAGTTTGTGTTTTTAATTTTATTGTGCACATATGCAGTTTTTCATTTTGGTGAAATGCCGTCTTTCGCTCTCTTTAAAACCCTGCAGATCAGCAAAAGAGCGTAAAGTGAGAATTT[G/A]GAAGGACTATGTTGCTCCCACAGCCAATCTGGACCAGAAGGACAGACAGTTTGTTGCAAAGGTGAGTGTTTGGTTGAAAGTTTCAGATTAAAGCACACCACAGAACAGAGAAGCAAAAGTCAGTGACGTGATGCTTTTTTCGACTCAGATATTGATTGAAATTATTATTTTAATACAATGACACATTATGATTAGGATGTACATTAGAATGAATGTCCCTATATTGAATAAATTCTGTTGCTACTTCTGTTAGGTTGCTTTCACACCTGCCTTATTTAGTCAATTGAATCGCACTAGAGTTTGTTTCCCCTTTTGGTACGGTTCGTTTGGGCAAGTGAGAATGCAGCAATCGCACTCGAGTGCGCACCAGAAGCGGACCAAATAAGCGTACCGAGACCTGCTTGAAGAGGTGGTCTCGGTATGCTTTCAAACGAACCCTGGAGCGGTTCGTTTGTGGTGAGAATATGATGCGTACTAAAACAGGTCCAACTGCAAAAAGT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa26284
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000040405 Essential Splice Site 512 913 14 24
ENSDART00000090972 Essential Splice Site 512 911 14 26
ENSDART00000100974 Essential Splice Site 512 574 14 15
Genomic Location (Zv9):
Chromosome 4 (position 18542708)
Other Location(s):
Assembly Chromosome Position
GRCz10 4 19619314
GRCz11 4 19608290
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TTCACAGCAAGAAAGAAGTGCCCATTCATAGAGTGGCGGACATTTCAGGG[G/A]TAAGTGGGTGTTGGGAATAACTAATCCTACATTGGATTTTTGTTTTGTTT
Long Flanking Sequence:
ATAAACCTCAGGACGAGCTCCTTTCCTCTCTTTTTCACTGAACATGATTGGACCCCAGAGAGGCTTCAGCCGCAGATACATCTGCCTTAAAGAGGCCAAAGACGCGTCCCTCATACCTCCTGTATCTACTGTAATCTGCAGGCGTCACAACTCAGCAAACCACTATTACACTGATCGAGCACTCAGACACACACAAAAGACACCGTATCCATTCCCATGTGTAATGTTGGGGTGCCGCTGCCCCATAAATGTGATTTGTTGGCTCTTTTGTGGCATGAGGGATGGATGGATGGATGAATGGGTGGGTTTGTTTAAGGGTTGGTTTCTCAGGCCTGGATAGAAATGGTTCAATTTCCTTTTTTTTTTTTTTTTTTTTGTAGGGATTTGTGAAGATTTCGATTGTAACTATGCTTTTGAATCATTGCAGGGCGATCAAGAATGGCAAAGGACTTCACAGCAAGAAAGAAGTGCCCATTCATAGAGTGGCGGACATTTCAGGG[G/A]TAAGTGGGTGTTGGGAATAACTAATCCTACATTGGATTTTTGTTTTGTTTTTTATGTTTAAATTAATTTAGGCGTTTTAGATGTCAATATTGCTCCCTTATGAAATATTGACTGATTAAAAGACTGATTAAAATCAATAATGCAACTTTTTAAGTATTCATTAAAACAACTCATCACAGTGAACTCGTATTAAAATAACAGGCGTTTTTAGTGTGACAATAAACTATTTGGTTAAGTTGAATGCATTGATAGGAGATGCGGTGGCGCAGTGGTTAGCACTTTCGCCTCACAGCAAGAAATTCACTGGTTCGAGTCTCGGCTGGGTCAGTTGGCATTTCTGTGTGGAATTTGCTTGTTCTCCTTGTGTTCGCGGGTGTTTTTCCCCCCACATCCGCTGTGTAAAATGTGCTGAATAAGTTGGCGGTTCATTCCGCTGTGACGACAGCTGATTAACAAAGGGACTAAGCCGGAAAAAATGAGTGAATTAATGTATTGAACTA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa6940
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000040405 Essential Splice Site 877 913 22 24
ENSDART00000090972 Essential Splice Site 875 911 24 26
ENSDART00000100974 None None 574 None 15
Genomic Location (Zv9):
Chromosome 4 (position 18349138)
Other Location(s):
Assembly Chromosome Position
GRCz10 4 19425744
GRCz11 4 19414720
KASP Assay ID:
554-4965.1 (used for ordering genotyping assays)
KASP Sequence:
AGGCATGGTCATGGTGGACATCCGGAAAGARAAGTACCTCCAGAAAATGG[T/A]GAGTCAAGAGTTCAAATAGGGAGCGTKGAGTGANNNNNNNGCTAGTTTTG
Long Flanking Sequence:
TACGTTTACCTAAGTAGGAGGACTTTTGCTACAGAGAATTTTGGAAATAAGGAAAAGGTCCATTGGCAATTTAATAATTGTACAGCCCTAGTTTTAAAACTACCTATTAAAGAGCAAGAACGTGTAAAAAAGAACTTACAGAAAGAAAGAGATTGAGAGTGCATCAGGTATAAATGCTGCGATTAAGCAATATCCTTTTGTTCCAATTTTTTTTTTAGCATCCATACTTTTTGTAAGCAATATTAGAAAATATATCCTGTTATGTACCATGATCTGATGATTGTCCCATCCGCAGGAAGACGCTCGTGCCGATGCCGTGGACAGTGTGGTGAGGGACATCCACAACACACAGTGTCTGCTGAATGTGGAGTACAGCGGCAGCGTCTGTCCGCAGGTCACGCTCCAGTTCGCAGACACTAAAGAAGATGTGGGTCTGGGTCTGGTCAAAGAAGGCATGGTCATGGTGGACATCCGGAAAGAGAAGTACCTCCAGAAAATGG[T/A]GAGTCAAGAGTTCAAATAGGGAGCGTTGAGTGACAGGTCAGCTAGTTTTGTCAAGGATGTATCATCATCGTCATTATCTTTGTGCCTGAATGTGCACCTTGCAGTTTCACAGCAGGACCTCTTACGGCAGACATTTTAAAATGTTATGAAGCACTAAGCGTTCATTCTGTCCTTGCTTTTCCCACTGTTATCCATCTTTGTTTCACCTGCTCTTTCTTCTTTACTGTTATGTAATGCTTGTCCTGTTTCTTGATCAGCTTTAAATCTCAATGCTTCCATTTGTAATGCACCATCAATTACACATGTTAGGGATCAGTTCATTTTTGGAATTGCATGATTTGCGTCAAACTTAATGAAGTTAGTTAGTTAGTTACAGTTATTATTCACTATGACAATAACTTTAGATCGGAGTTTGTCACAAGTTATATAAACAAATGATATAAATACAAATTATATAGCATAATAATAATAATAGTAATAACAATGTCAATGAGAATAAT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa20259
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000040405 Essential Splice Site 892 913 23 24
ENSDART00000090972 Essential Splice Site 890 911 25 26
ENSDART00000100974 None None 574 None 15
Genomic Location (Zv9):
Chromosome 4 (position 18336236)
Other Location(s):
Assembly Chromosome Position
GRCz10 4 19412842
GRCz11 4 19401818
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GACAGGTGACTGAATATCTGAATGCCCAGGAATCTGCCAAGAGCGCCAGG[G/A]TAAGATCTGCAGTTTTAAGTTCTTGATTCATATATATGTCTGTTGCTTTC
Long Flanking Sequence:
ATCCTCCACTTGGTATAAACTTGGACGAGTTTCTACTGTAAGTTTGAGTAGAGGTTTTGAAGAATGTCTGGAAAGTAGTAGCTATTGGAATCTTCAGTTATTCTGTGTTCTCATGTTTTAAGAAGTCATATTCTGTATTCAACAAGAAAAACAAAATAGTTATAAATGTTTAGAATTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAAGAGTTAGTGATTATTTACGGTGAACTATCCCTTTAAAAGACTAAGTAAAAAAAAAAATAATAACGCTAGGTTTCTCTTGCTTATTGATGTTTCTCTTTTCCCTCAAAGAGTTTAACACAACACTAGGTTTTTCTCTGGTTTAATTAATTTTTTGTTTTTGTTTTTCTTGTGACAGGTGACTGAATATCTGAATGCCCAGGAATCTGCCAAGAGCGCCAGG[G/A]TAAGATCTGCAGTTTTAAGTTCTTGATTCATATATATGTCTGTTGCTTTCGTCTTGAGTCTCTTGCCACATTGTAGGCTATATAAGAAACGGGGTCCCAGTCCTTAAACCGCATAATACAAACAAAAAAAATCTATAAACATAAAGCAAATATTTATATAATTGTAACCAATATTACAAAGTATTTTGGATTAATTTCTCACTAAAAAGCACTAATAACTTTCTTTGACTCTTGAAAATATCTTCTGATGGTTCTATTGTCACAAACAACAGCAGTCTACACAACAGAAATCTGTTGTCTAATTTTACCTGCAGTGCTTCTGTGAGAGGAATACATTCATTTATATAAAATCAACAAACAGGAATGTTTCACTTCATAACAAAAATAAATAAATAACCTTATCATGTAGGCCATCATTTTTCTATTCGCTCATTTGAATCTTTTTGGCTCGAGACTTCTGGTCTCATTCACTTCCATTTTTTTTTTAGATGTTAAAAACA
Associated Phenotype:
Not determined