ZMP
rarab
Ensembl ID:
ZFIN ID:
Description:
Retinoic acid receptor alpha-B [Source:UniProtKB/Swiss-Prot;Acc:Q7ZTI3]
Human Orthologue:
RARA
Human Description:
retinoic acid receptor, alpha [Source:HGNC Symbol;Acc:9864]
Mouse Orthologue:
Rara
Mouse Description:
retinoic acid receptor, alpha Gene [Source:MGI Symbol;Acc:MGI:97856]
Alleles
There are 2 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa20058 | Nonsense | Available for shipment | Available now |
| sa20057 | Essential Splice Site | Available for shipment | Available now |
Mutation Details
Allele Name:
sa20058
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000044677 | Nonsense | 173 | 458 | 4 | 8 |
| ENSDART00000126022 | Nonsense | 175 | 460 | 4 | 8 |
Genomic Location (Zv9):
Chromosome 3 (position 33206855)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 3 | 32938165 |
| GRCz11 | 3 | 33069879 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CGGAACAAAAGGAAGAAAGACGACAAGAAGCAAGAATGTTTGGAAAATTA[C/A]GTCTTAAGTCCAGATACGGAGAAGATGATCGAGCAGGTGAGGAAGGCCCA
Long Flanking Sequence:
TCAAAGCATCCAGCTGTCTTTATCTCAGTGGAAATGTATTTTTACATCCCTGTTTGTTTCCTTATGCGTGTATGTGCGCACATGTATATACGTGTCCTCTTGGTCTCCCACTTAATCCGTCTCCTCCTCTTTCATTCATTGTTGTTTCCAAGTAAATTAGCTGCCAAAATGATTGAATCACAACAAGAGTGTGGATCTGAAAAAGGTTCAAGTGGATGATAGGCTGCTGCTGCTGCTACTTTCACCAGGCAGAGAAAAAGAACGCTGGACTTTTACTGCCATCTTGTGGTGTATATTGTGTAGTGATGTATGTGTGTGCGTATATAGTATGTGTAGCCATTTGTGGTACTATGAGATTTAAATCTAGGTGTTTGTTTGATCTGATCACTAAAAATTAAGATGGATTGACAGCTGTGTTTATTTTTTCTTGTTGCAGCTGTTAGGAACGACCGGAACAAAAGGAAGAAAGACGACAAGAAGCAAGAATGTTTGGAAAATTA[C/A]GTCTTAAGTCCAGATACGGAGAAGATGATCGAGCAGGTGAGGAAGGCCCATCAGGAAACCTTCCCCTCGCTCTGTCAGCTGGGAAAATACACCACGGTAAGACACCAGGTCTTAAATGGATGCAGTTAATGGATAGAAATCACACTCTCAGCTACTAAACCCAGCAAACATTGATGTCTGTCAACAGAACAACAGCGCAGACCACAGGGTGGCTCTGGATGTCGACCTGTGGGACAAATTTAGCGAGCTCTCCACCAAATGCATCATTAAAACAGTGGAGTTCGCCAAGCAGTTACCCGGCTTCACCACGCTCACCATCGCAGATCAGATCACCCTGTTAAAGGCCGCCTGTCTCGACATCCTGGTGAGGGAACGACACCTGCTGTTTTCTCACACACACCAGTGCACATTTAAACCTACTCTTTGGATGGTGTATGCTTAAACTTTTGAACTTTCTTCCTCAGATCCTGCGAATATGTACACGCTACACACCCGATCAG
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa20057
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000044677 | Essential Splice Site | 333 | 458 | 6 | 8 |
| ENSDART00000126022 | Essential Splice Site | 335 | 460 | 6 | 8 |
Genomic Location (Zv9):
Chromosome 3 (position 33206184)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 3 | 32937494 |
| GRCz11 | 3 | 33069208 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GATGATGCAGAGACTGGGCTTCTTAGCGCCATCTGTCTGCTGTGTGGAGG[T/C]ACTGCAGCTTTAGACACATTTATTTTTTTAATCTTGTTTCAATTTGTCGA
Long Flanking Sequence:
TTGATGTCTGTCAACAGAACAACAGCGCAGACCACAGGGTGGCTCTGGATGTCGACCTGTGGGACAAATTTAGCGAGCTCTCCACCAAATGCATCATTAAAACAGTGGAGTTCGCCAAGCAGTTACCCGGCTTCACCACGCTCACCATCGCAGATCAGATCACCCTGTTAAAGGCCGCCTGTCTCGACATCCTGGTGAGGGAACGACACCTGCTGTTTTCTCACACACACCAGTGCACATTTAAACCTACTCTTTGGATGGTGTATGCTTAAACTTTTGAACTTTCTTCCTCAGATCCTGCGAATATGTACACGCTACACACCCGATCAGGACACCATGACGTTTTCAGATGGTCTGACACTGAACCGCACACAGATGCACAACGCCGGCTTTGGCCCTCTCACAGATCTGGTGTTCGCTTTCGCCAACCAGCTTCTGCCTCTGGAGATGGATGATGCAGAGACTGGGCTTCTTAGCGCCATCTGTCTGCTGTGTGGAGG[T/C]ACTGCAGCTTTAGACACATTTATTTTTTTAATCTTGTTTCAATTTGTCGATCTTAAACAGTGGTCTCAAACTTAAATTGGTGGAGTTGCCATTTCAGTTACTGACAATCCATAGAAAGGCCGCTTTAACATTAAAGTCCAAGAAAAAAAGTGGAAACCTGACATAACTGATGCATTTTAGGACAACAGATATGACGTTTATATTTATTTCAAACATTACCTGTCACCAGAGATGATGCAAATCAGCAAGTTTATCATGTCACACATCAGCTGCTGAAATATTTCTATGGTTGTTGTGTGTATGGCACACACACACTCAGTCATTCTTCCACAGACTATATGCAGTCAAAACTCTAGTTTTTTTTGTCTTGTTGTACATATTGAAGGGATAAAATGCTTTAAAAATACTACAACTTATAGGCATAAAAATATTATTCTGTCCCAACCAATTATATTGTCCCAATAGCGTAAGAACAGCAGAAAGCAGTTTGGGTAATCTAA
Associated Phenotype:
Not determined