ZMP
zgc:56533
Ensembl ID:
ZFIN ID:
Description:
hypothetical protein LOC394045 [Source:RefSeq peptide;Acc:NP_957364]
Human Orthologue:
LMCD1
Human Description:
LIM and cysteine-rich domains 1 [Source:HGNC Symbol;Acc:6633]
Mouse Orthologue:
Lmcd1
Mouse Description:
LIM and cysteine-rich domains 1 Gene [Source:MGI Symbol;Acc:MGI:1353635]
Alleles
There are 3 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa39388 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
| sa19308 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
| sa9066 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa39388
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000008913 | Essential Splice Site | None | 162 | 2 | 6 |
| ENSDART00000124991 | None | None | 342 | None | 5 |
Genomic Location (Zv9):
Chromosome 22 (position 42143130)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 22 | 39110635 |
| GRCz11 | 22 | 39097219 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GGCAGGAGCTGCACCTCACCTCACCATAACGCGGAATAAACTCCAGAAGG[T/C]AAGTGATGTGTTAGCATTTTCAACTATTTACATGAACAGATGCTACGAGC
Long Flanking Sequence:
TGAGTAATGTTTATAGGTGTTGCTTTATTTATTTCTAACATTTTTGTTCCGTTCTCTGACTGACGCCTTTGCTTTAGGTGTGCTCAACCCTGTTCCTGGAGGTCTACCTTCAGCTCCAACCTTAATCAAACACACGTGAGCCAATTAATGAGGACCTGAACAGCACTTGATCATTCCAGGCAGGCAGGTGTGATTGATATTGCAACTCAAGTGTGCGGGAAGGCAGGTTTCCAGCAGCAGGGTTGACACTCATGCTTTAGGCTGCTTCTAAATATGTAAATGCAGAGAGTGTCCTGAGGAACAACACAAGAAAAATGTTGAAACGTGAGCCTCTGTGTGTTCAGCTCACATTCACGAGTGAGGTAATGTCTCCCTCCTGCATCAGAGCGCGGGCATTACTGTCAGTCAGTCAGAACTGTGAGCACACCGAGCACTTCAGCTGTGGAGAGCGGCAGGAGCTGCACCTCACCTCACCATAACGCGGAATAAACTCCAGAAGG[T/C]AAGTGATGTGTTAGCATTTTCAACTATTTACATGAACAGATGCTACGAGCATCTTCATAAGGACAAGCACGAGTTTACAGTAAAGGGTCTTTATTGTTGAACAGCACTAGATTATTCAGCTGAACTAATGTTTATTTGTTAGCACCTCTACATCTATATAGCAGAAAATAACACTGAGATACAATATTGCTGCTTTTGTCTAACACACCGGTGATGTAATGTCTCATTCCTGCACGAATCAAACCGTGAGTCAGGGTGAGCAGGCAGACGGAGATCGCAAAACCAAACCAACACACAACACGAACACACAACAAAAATCAGCCTAAACATGCCGTAACTTCAGTGCAGGTCCTTCTTTTCTAACAGAGTAGATGTTGGCCATGTGACGGTATGTGTCTGACCTCAAGCCCAAACGGAACTCGGCTTGTGAATGCGTGTTTTCACTGAGTTTCTTGTTAAACCTCCAGCAAAGTTAGTTGTGGTTCTCGGCTTTGTTCAGC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa19308
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000008913 | Essential Splice Site | 30 | 162 | 3 | 6 |
| ENSDART00000124991 | Essential Splice Site | 30 | 342 | 1 | 5 |
| ENSDART00000008913 | Essential Splice Site | 30 | 162 | 3 | 6 |
| ENSDART00000124991 | Essential Splice Site | 30 | 342 | 1 | 5 |
Genomic Location (Zv9):
Chromosome 22 (position 42146201)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 22 | 39113706 |
| GRCz11 | 22 | 39100290 |
KASP Assay ID:
554-6174.1 (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGTCTGACATGTAAAGGGATCTGCCCTGGATTCCAGCCACATTCCTGGAG[G/A]TAATTTATTCTCTTGACTGAAAATATAAAAATGAGAAGATGTGTGTGTGT
Long Flanking Sequence:
GGCTGCATATGGTCTGTTGTGGTCTGTTTATTGTTGTGTGCTGCTATTTTTGCTCTATAGTAATCTCTGATGAAAGATCAGCCATTTGGATCAGATAATTGTGATCAACAGCCAGATATTATGAAGGCTGTTGGAGATGTGAGTGAGCGTCATCTGCAGCTCTGATCTGTGTCTTACACTGATTTCTCACCAGTACCCTTTAAAGACTGTTTCCTTCTGATTTCTGAACTCACAGTAAGAGTTTGTTCTTGGTTTGCTAGTTAAAGGTTTTCTTTTTTTAGTGGTGGTTATTGGTTCGTCTTCTTGAACCTCATTCACCACTTACTGTCAGAGTTTTGGTCAATTCCTCTTCTTCGGCGAGTTCCTCGTACTGCTGTTCTGTGAATAATCCTCTTCCTCTTTTTTCCCCAGATGTCGAAGGGGCCACTGCCAGCAGGAAAGGGTGCAGCGTGTCTGACATGTAAAGGGATCTGCCCTGGATTCCAGCCACATTCCTGGAG[G/A]TAATTTATTCTCTTGACTGAAAATATAAAAATGAGAAGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATAACTGTAGTTGTGTATGTTGGTGTTTCTTTGTAAATTCTTTGTTTCTGCTGTGGCCTTGGTTATACGTAGCTCATGCAACACTAATGTCAGAGCATACAGAACCACTACAAGAACTTGAGGTATCCGGTTTCCAGGCCTCAATTAATTAAAGCGTAATTAAATTCTGGTTGATGTCTAGAAATGAAAGGTGAAAACTAAAAATTGCAAACGTTTTAATAACTTGATGCAAACTTAATATGTTTAAGTCCAGTGTATTAATAAAGTCTAGATTGTGATAATTTACCACTACATGTCTTTCAGGTTGGAGAAAACCATCATGTAGTGTATGATGATGATGATGATGATGCAATACAACGCTGAAAACGTTTGATTGTTGGTCTAATATGGTGTTCTTTATAGTCCTTGGGA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa9066
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000008913 | Essential Splice Site | 30 | 162 | 3 | 6 |
| ENSDART00000124991 | Essential Splice Site | 30 | 342 | 1 | 5 |
| ENSDART00000008913 | Essential Splice Site | 30 | 162 | 3 | 6 |
| ENSDART00000124991 | Essential Splice Site | 30 | 342 | 1 | 5 |
Genomic Location (Zv9):
Chromosome 22 (position 42146201)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 22 | 39113706 |
| GRCz11 | 22 | 39100290 |
KASP Assay ID:
554-6174.1 (used for ordering genotyping assays)
KASP Sequence:
TGTCTGACATGTAAAGGGATCTGCCCTGGATTCCAGCCACATTCCTGGAG[G/A]TAATTTATTCTCTTGACTGAAAATATAAAAATGAGAAGANNNNNNNNNNN
Long Flanking Sequence:
GGCTGCATATGGTCTGTTGTGGTCTGTTTATTGTTGTGTGCTGCTATTTTTGCTCTATAGTAATCTCTGATGAAAGATCAGCCATTTGGATCAGATAATTGTGATCAACAGCCAGATATTATGAAGGCTGTTGGAGATGTGAGTGAGCGTCATCTGCAGCTCTGATCTGTGTCTTACACTGATTTCTCACCAGTACCCTTTAAAGACTGTTTCCTTCTGATTTCTGAACTCACAGTAAGAGTTTGTTCTTGGTTTGCTAGTTAAAGGTTTTCTTTTTTTAGTGGTGGTTATTGGTTCGTCTTCTTGAACCTCATTCACCACTTACTGTCAGAGTTTTGGTCAATTCCTCTTCTTCGGCGAGTTCCTCGTACTGCTGTTCTGTGAATAATCCTCTTCCTCTTTTTTCCCCAGATGTCGAAGGGGCCACTGCCAGCAGGAAAGGGTGCAGCGTGTCTGACATGTAAAGGGATCTGCCCTGGATTCCAGCCACATTCCTGGAG[G/A]TAATTTATTCTCTTGACTGAAAATATAAAAATGAGAAGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATAACTGTAGTTGTGTATGTTGGTGTTTCTTTGTAAATTCTTTGTTTCTGCTGTGGCCTTGGTTATACGTAGCTCATGCAACACTAATGTCAGAGCATACAGAACCACTACAAGAACTTGAGGTATCCGGTTTCCAGGCCTCAATTAATTAAAGCGTAATTAAATTCTGGTTGATGTCTAGAAATGAAAGGTGAAAACTAAAAATTGCAAACGTTTTAATAACTTGATGCAAACTTAATATGTTTAAGTCCAGTGTATTAATAAAGTCTAGATTGTGATAATTTACCACTACATGTCTTTCAGGTTGGAGAAAACCATCATGTAGTGTATGATGATGATGATGATGATGCAATACAACGCTGAAAACGTTTGATTGTTGGTCTAATATGGTGTTCTTTATAGTCCTTGGGA
Associated Phenotype:
Not determined