Busch Lab

ZMP

upf3a

Ensembl ID:
ENSDARG00000069297
ZFIN ID:
ZDB-GENE-060721-2
Description:
Regulator of nonsense transcripts 3A [Source:UniProtKB/Swiss-Prot;Acc:B0S733]
Human Orthologue:
UPF3A
Human Description:
UPF3 regulator of nonsense transcripts homolog A (yeast) [Source:HGNC Symbol;Acc:20332]
Mouse Orthologue:
Upf3a
Mouse Description:
UPF3 regulator of nonsense transcripts homolog A (yeast) Gene [Source:MGI Symbol;Acc:MGI:1914281]

Alleles

There are 4 alleles of this gene:

Allele Name Consequence Status Availability
sa11009 Essential Splice Site Available for shipment Available now
sa21535 Essential Splice Site Available for shipment Available now

Mutation Details

Allele Name:
sa11009
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000100728 Essential Splice Site 80 452 2 10
ENSDART00000123005 Essential Splice Site 80 427 2 11
ENSDART00000139608 Essential Splice Site 80 478 2 11
ENSDART00000100728 Essential Splice Site 80 452 2 10
ENSDART00000123005 Essential Splice Site 80 427 2 11
ENSDART00000139608 Essential Splice Site 80 478 2 11

The following transcripts of ENSDARG00000069297 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 9 (position 35884353)
Other Location(s):
Assembly Chromosome Position
GRCz10 9 35103864
GRCz11 9 34913049
KASP Assay ID:
2260-2134.1 (used for ordering genotyping assays)
KASP Sequence:
AGTCCTCTTCCATCTTTTGACTATTTTGAGTTCTTTCCTGCTGATCAGAG[G/A]TATGTCCACTTTSTTTATATAGAAATACTATGATCATGAGTGCTGTCAGT
Long Flanking Sequence:
CTACATAAAATGAATAAAATGTAAAAAGTTTTTACACTCACAAAAAATTCTTACATGCCTGTCTGTTTTTTAATAACTAATAAGGTTTCAGTGATATTTTCATATCTGAACAAGAATATTTTTGTTTTTATCTTAAAAATTTGATAATTTTATTTTTAAAAAGTGGTCAGTTTTGTAAACCAGAAATATTATAATTATTTGTTACATATGTCCTGTTGTTAAATAAAATAATAATAATAATAATAATAATAATGCATTATTATTATTACCATATTATCATTATGAAATACTTTATAGTTCATTGATAATATAGTAATATTTCTTCATTTTTTAATAACTTGAATAAGCTTGTTTTCAGTATTATCAGACTTCTTTTATTCTTCTTTTATATAGGTTGTCATCCGCCGACTGCCACCCAGTCTATCAAAAGACCAGCTCCAGGAGCATCTGAGTCCTCTTCCATCTTTTGACTATTTTGAGTTCTTTCCTGCTGATCAGAG[G/A]TATGTCCACTTTGTTTATATAGAAATACTATGATCATGAGTGCTGTCAGTGTAATTTACATGTGCATATTTGATATATTTTTATTCTCCCCAGCTTATACCCTCATCTCTTCTCAAGAGCATACATAAACTTCAAAAACCCAGAGGATATCATAATATTCAGAGATCGCTTTGATGGCTATGTATTTATTGACAATAAAGGTGATTTGCTTTCTGCTTTTTTTCTATGTATCCTCATTGAATCTAATATTTTCTGACTATAACTTTAGGATATTTACTTTTTATTATGACATATGATATAATAGATTAGTATAACATTTATTTTACTTCTGTTTATTTAGGTCAAGAATATCCAGCTGTTGTAGAATTTGCCCCATTTCAGAAGGTTTCCAAGAAAAAGCTAAAGAAGAAAGATGCGAAAGCTGGGACCATTGAAGAAGGCATCTTAAAAAAGATTTCTTAATATTTATAATTTTGAAGTATTCAAGAATTGACGTCATT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa21535
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
T > G
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000100728 Essential Splice Site 302 452 8 10
ENSDART00000123005 Essential Splice Site 277 427 9 11
ENSDART00000139608 Essential Splice Site 302 478 8 11

The following transcripts of ENSDARG00000069297 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 9 (position 35879754)
Other Location(s):
Assembly Chromosome Position
GRCz10 9 35099265
GRCz11 9 34908450
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GATGGGAAAAGCCTGGAGGACACACTAAGTCAAAGGATTCAAAGGATAAG[T/G]AAGAGCTTCCTAAAACTTACCCCTTCTTGAAAAGATATGAGTTAAAAATA
Long Flanking Sequence:
GAAATTAGAGAAACAGGTAAGAGCACCATATCACTGCATATAACACACTGCGGTTTTGTGCTGTATGTACATCACCATGCCTTTCCATTCTAGAGAATAAGAGAAGAAAAAAGAGAAGAGAGGCGAAGAAGAGAACTGGAAAAGAAGAGGCAGAGGGAAGAGGAGAAGAGGAAACGCAGAGAAGAGGAGAGACAAAAGCGGAAGGAGGCAGAAAAGCAGAAAAAGCTCTCTGAGAAAGAGATAAAGATCAAGGTACGAGTTTAATACCATATTACATCCCATTGCTCGACTGTGCTTATCAGTACTGTAAAACACACACAAACACACGCAGTCATAACATCAGATTTGCATGTTGACTGCTTTAGCTTTTGAAGAAGTGTGACCGAGACGATGACGTGGATTCAGACAGACTGAAAGATAAAGGAGACAGTGGAGAGACGGAGAAGAACAGATGGGAAAAGCCTGGAGGACACACTAAGTCAAAGGATTCAAAGGATAAG[T/G]AAGAGCTTCCTAAAACTTACCCCTTCTTGAAAAGATATGAGTTAAAAATAGAGTTAAAGAGTTAAAAATAGAGTTTAAAAATTAAGGATTCAGATTTGTAAATCAACCAAAAGTTGAAAGTTGGGATGAAATTTTCCATTTTCTTAATAACTTTTTAAAGGGATGGATTTACTCGACCAGAAATAAAGATAATTTAAATAATATTTGTAACAGATTTCCAACATTGTTTGAATTATTTTCTTTTGTGTTCAACTGATGACATTCTATGTGGGTGATTAATTTTGTGTGGACTGCCCCCTTATTCATACTTTCCTAATTTTATCTTGTTAATTTCAATGGAAATGTCATAACTTTACTTTCTCTATTTTCCACAAGTGGAATTTTATTTTTGGCTTCACCACACAACCACATCAGCGTTCATATTACACATATCATAGAAAAACAGGCAACACAAATACATTCAGTGTCATCACATAAATCACATTAAAAACTCAATTAAC
Associated Phenotype:
Not determined