ZMP

hif1al

Ensembl ID:

ENSDARG00000041169

ZFIN ID:

ZDB-GENE-040426-1315

Description:

hypoxia-inducible factor 3-alpha [Source:RefSeq peptide;Acc:NP_956699]

Human Orthologue:

HIF3A

Human Description:

hypoxia inducible factor 3, alpha subunit [Source:HGNC Symbol;Acc:15825]

Mouse Orthologue:

Hif3a

Mouse Description:

hypoxia inducible factor 3, alpha subunit Gene [Source:MGI Symbol;Acc:MGI:1859778]

Alleles

There are 3 alleles of this gene:

Allele Name	Consequence	Status	Availability
sa45539	Essential Splice Site	Mutation detected in F1 DNA	Not yet available
sa18426	Essential Splice Site	Available for shipment	Available now

Mutation Details

Allele Name:

sa45539

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

G > A

Consequence:

Essential Splice Site

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000023421	Essential Splice Site	283	626	8	15
ENSDART00000060343	Essential Splice Site	283	626	8	15
ENSDART00000114884	None	None	237	None	6
ENSDART00000124696	None	None	170	None	7

Genomic Location (Zv9):

Chromosome 15 (position 24841881)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	15	25575214
GRCz11	15	25510479

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

TATAGAATTATAAAAGTGGCCAATTATAGTTTTTTTTCTGTGTACTTCCA[G/A]TGTTCTCCAAGGGTCAGGTGTGTACCGGCCAGTACCGTTTTCTTGCTAAG

Long Flanking Sequence:

TACTTCTGCATACTGTTTGTGTTGCTCTGCAATAACGCCTCCGATACACTAGCTGGCAGTAGGTTTTTCTGTTTTTCTGTTTCGAGTTTCTTCATGGGTCTTTAATTTTTTCTGAACGCTACCTTAATGTACAAGTAGCTGTAAACACAAAAAAAGTTTTCATCTGGAGCTCCTTCATGAGACTCAACACTTAAACAGCCGCACCAACGGGTTCGAGTGGCTCTCAGTCCTGCCACACTGGTCACAGCTACCAAGCCAACCAATCACCTTGCGCTACGCATCGTTGCGATATGTAGTTAAATTTATTATGAGGTGCACGTCAGCATTGGCATCAGCCACGTCGAGGGCTATTCAACCGCACGAAAACTGTGCTGGAGCATACACGTGCGCTTGACTCAAATATAAATCAGCCTTAAGTAATTTAATGTTGTTTTAATTCTTTGTATTTTTTATAGAATTATAAAAGTGGCCAATTATAGTTTTTTTTCTGTGTACTTCCA[G/A]TGTTCTCCAAGGGTCAGGTGTGTACCGGCCAGTACCGTTTTCTTGCTAAGAATGGAGGATTTGTGTGGACTGAGACTCAAGCCACTGTCCTCTACAACAGCAGGACCTCTCAGCCTGAGGCGGTGGTCTGCCTCAACTTCATTCTCAGGTAGCTCAAACATCTTTGTCTTCTGCCCTATTTTTGCTGGATCTGATGTTGTTTTATTAGCATTGACATACTGCTGTAGTTTTTATTCATCAATTTTATTTTCTGTAATTTTTTTTATAGTTTTTTTTATATTTAGTTGGAAATCACAATTATTAGATTTTTTTATTTATTTATTTATTTTTAAATATTTCCCAATTTTTACTGTATTTGCTATTATATTATTGATTATATATTTTGTCCTGCAGAAAGTCTTTGTTTGTTTTATTTCAGCTAGAATAAAAGCAGTTTTTATTTTTTTGAAAAATATTTAAGGTCAATATAAAAATATCTAGTAAAATATTATGTGCTGTCA

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa18426

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC
Order Allele From EZRC

Mutation:

T > G

Consequence:

Essential Splice Site

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000023421	Essential Splice Site	562	626	13	15
ENSDART00000060343	Essential Splice Site	562	626	13	15
ENSDART00000114884	None	None	237	None	6
ENSDART00000124696	Essential Splice Site	106	170	5	7

Genomic Location (Zv9):

Chromosome 15 (position 24838811)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	15	25572597
GRCz11	15	25507862

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

GATGAGCGGCTCGGTAGAGGACCAGCTTCTGCTCAGCCAYACATTRCTGG[T/G]AAATTCAGMTTATTTTTTNAAATGTGCAGAAGTAGGCTGTTAGTAAATCTG

Long Flanking Sequence:

GTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGACTGACTGACTGACTGAGTGAGAGAGATATTATCCAGAAAATTTAAACACATCTATTGTATACCAAGGCTATGTTTATTTAATTAAAACACTACTAAAAAGTGATATTAATATGATTTTAAATACCTCTTTTCTATTTTAATATAGATCATTATATTATTTTATTGTTAATATTTCTATACTGTATTGTCATCAGCTAGTTTTTAGTCTGACATGAACCTTGTCAGAAATCATTGTATTATATATGAATTAAATGTTTTATGTTTAAATGTTTTAATAATCTTTTCAAAATGAAGATCTGTGTTTGATTGTACGATGTGTCTTTAATGTCCCGTTATGTGCTGTTCTTCACATCAGGTGTTTGGAAGATGATGATGATGATGACATTCCTGTTTTGGCTGCTAGATGGGACAAGAAACAGATGAGCGGCTCGGTAGAGGACCAGCTTCTGCTCAGCCACACATTACTGG[T/G]AAATTCAGCTTATTTTTTAAATGTGCAGAAGTAGGCTGTTAGTAAATCTGAACTAGGGCTGCACAATACTGAGAAAATATGCAATATATGATGTTGCTGTGATCATGTTTTTTGCTAGACTTCCTGACAATCAAAAAGCATTGTGTATTTTATTTTATTTGTACTCTGCACTGTATTGGTCTCAATTCCTGGAGGGTCACAGCTCTGCATAGTTTTCCTTCAGGAATCCAATTTGAGACTCAATATTTATCGTAGAAAAATACAAAATTGCAATGTCAATTTTCCCATATCAAACAGCCCTTATTTATGTCATGATCATATTAAAATAAACAGATACTAGATATAGTGTAATTACATCTAATTTGGGCTAATCAAAACGATGTGAAGGTGCAAACATTTAGACCAGGAGTTCTCAATCTCGGTTCTGGAGGTCTGGTGTCTTGCAGATTTTAGCTGCGCTGGTTGTGGAAATTCAAAATTGACCCAAAACATCATTAGGA

Associated Phenotype:

Not determined