ZMP

smg7

Ensembl ID:

ENSDARG00000060767

ZFIN ID:

ZDB-GENE-030131-9122

Description:

protein SMG7 [Source:RefSeq peptide;Acc:NP_001038548]

Human Orthologue:

SMG7

Human Description:

Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) [Source:HGNC Symbol;Acc:16792]

Mouse Orthologue:

Smg7

Mouse Description:

Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) Gene [Source:MGI Symbol;Acc:MGI:2682

Alleles

There are 4 alleles of this gene:

Allele Name	Consequence	Status	Availability
sa19816	Essential Splice Site	Available for shipment	Available now
sa18100	Nonsense	Available for shipment	Available now

Mutation Details

Allele Name:

sa19816

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC

Mutation:

G > T

Consequence:

Essential Splice Site

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000085976	Essential Splice Site	335	1130	10	22

Genomic Location (Zv9):

Chromosome 2 (position 35782936)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	2	36079646
GRCz11	2	36062103

KASP Assay ID:

2259-2308.1 (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

CACAAGCATTATTTTGTGCAATATTGTGATGTTCTGATGGTCTTTCCCCA[G/T]TGTCTTTTCTGGGAGTGATGCTAAGTCGAGCTTTACTGAATAAGAACCGA

Long Flanking Sequence:

CTGTCTTTTCTTGATTTGACCAGCCTTTACCTGATCCTTCAGAAATTGTATGCTTATTTAGTACTAAAGAAACATTTTTCATCTTTATCAGTTGAAAACAGGTGCTATTCTTTCATTCAACATTTGTTTAAACAGATTTTTCTATGCAAAACAAATGGTTTTGGCCAAAAAATGTATTGTAATAAATATTTATCTCGGAGGAATTGAAAGCTATTTTTGATATATATATCCAGAAATTTTCAAACCAGACGATAACCTTATCAAATGCATAGAGCTAAATATACAAGCATTACATTTACCTATTGTTTAGAAAGAGCCATTTCAATTGTAAAAGGCCAACTGCTGCCTTAAAAAACTGATTTCATCCTATTGAAATGTAAAATATTGTCTTTTTTGTAAAAAGAAAAAAGGATAGCTCCCACAAAATGAAACAAACTTGAAACTAAGCCTCACAAGCATTATTTTGTGCAATATTGTGATGTTCTGATGGTCTTTCCCCA[G/T]TGTCTTTTCTGGGAGTGATGCTAAGTCGAGCTTTACTGAATAAGAACCGAGAGGAGATTATGGGAGAATGTCCACTGCCTGCCATTAAAGTATCTCTGGACTGGCTGAGGCTTCGACCCACTGTGTTTAATGAGAGTGCCATGGACAAGCGACAGTAGTAAGAAAACCTTTTTTTTCCCACCAAAATTAGAAATATTATTAATAAATAGTGGATGATTTAGTATTTTTGTGTTTGTATTAAGTGGGGAACCTATTGTCTCTTAAAAGGATGATTTACTGGATCTCAATTAACAATTTGTTTAGTCCCAACTAAAGAAAAACAAATAATTAGATTTGCTGATATTTTTATATATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATATATATATATATGTGTGTATATATATATATATATATATATATATATATA

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa18100

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC
Order Allele From EZRC

Mutation:

C > T

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000085976	Nonsense	937	1130	19	22

Genomic Location (Zv9):

Chromosome 2 (position 35793632)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	2	36090342
GRCz11	2	36072799

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

ATGATGAAACAATATTTAWGTTTGCTGCTGTTTTACAGGATAACTCCTAC[C/T]ARAAYAACAGCATTTTTAGTGAGGCCTACGGTAAAAACATGACACCTTCA

Long Flanking Sequence:

ACTGTGGTCTGCTTTGAGTTGTTGGAATATACATGCGTTTTGCAGATTACTTATAATTGTGCTTCTGTCTCTCTGTAGTTGCCAAATCAGTCTCGGCTTGACAGTGGAGCTGATGTGATTGGTCAGTCCTCCCTTCTTCCTCGATTTTCCATTCAGGTAAGCATGCATCTCTTTGTATCAACTTGCTCTTTAGGCCCTCCTTGCATGAACGATTGAAAGTCACTAGGTGGCAGTGCTGTCCTACAAAACGAGATTGGATTATATTTTTTGCTTTGCTGGATGTTGTATACCTGGATTTGACAGCAAATGCAATTAAGTTGTTTACACTGACAGGTAGACTTTTAGGTAGAAGTTTGAATCAGACCTGCGTTTATTTCCTTATACTGTTCTCTCTTTTTGTTCTGTCTTCACTGAATCTATCAAAATAAGGCTGATAAACAAATCAAAACAATGATGAAACAATATTTATGTTTGCTGCTGTTTTACAGGATAACTCCTAC[C/T]AGAACAACAGCATTTTTAGTGAGGCCTACGGTAAAAACATGACACCTTCATCTAAGCCGGATGCACCCATGATGCATCAGGAGCCCTCACTCTATTCCCTGTTTGAAGGAAATCCCTGGTCTCCCTCCCTTCCTGCCAGCTCAGGTACCAATATTGAGATCTGTGATGTCTAAAGCATGTGAGAAGCATGATTTTTTAAATCATTTCTACCTATGATTTGTTATTGTAGATCACTCAACCCCAGCAAGCCAGTCCCCTCACTCCTCCAATCCCAGCAGTCTGCCTTCATCCCCACCCACCCACAGCCATGGCTCCATGCCCTTCTCCAACTTTGGCCCCATCGGGACGCCAGACAGCAGAGACCGCCGAGCAAATGATCGCTGGAAGGCTGAGAAGACTGGTAATGATGCTGAGCACGCTGTTGTGGTTCTGTTAACAAATAGTAAGGGTACAGTAAATAAATTAAAAGGATTTCATAAATATACATCCTAAAATACCTG

Associated Phenotype:

Not determined