Busch Lab

ZMP

pcdh1

Ensembl ID:
ENSDARG00000036175
Human Orthologue:
PCDH1
Human Description:
protocadherin 1 [Source:HGNC Symbol;Acc:8655]
Mouse Orthologue:
Pcdh1
Mouse Description:
protocadherin 1 Gene [Source:MGI Symbol;Acc:MGI:104692]

Alleles

There are 7 alleles of this gene:

Allele Name Consequence Status Availability
sa17938 Nonsense Available for shipment Available now
sa10175 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa17938
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
G > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000105588 Nonsense 9 1093 1 4
Genomic Location (Zv9):
Chromosome 14 (position 38827707)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 37212860
GRCz11 14 37553174
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ATCTTTTGCAGCAACAGACTGACGATGTGYCAGAGTGCCAATGCGATGTG[G/A]TCACGGTGGAGTGCCATGCTAGWGTGGATTTTGCTTCTCCTCTGCTGCTC
Long Flanking Sequence:
GGATTTTACCCTTTTGCTGACCCCAGGCACGATTCTGAAAATGAACATCAAGACAGTTTATCAATAGCTTGGAAACGGTAGATCAAGTAGAGCAAAAACAAATATCATTTCAATGGGCATCAGTTGTCTGCTATCTTCCTCCTCTCTTAGGGTCAGCCAGCCAATGCATCTCTTAGGAACACTGACATATGTTGTCTTTATGAATTAGACATGACATGAAGTTTGCAGAATGAAGGTCAAACACAAGTAACTGTTTGTGACACATTTACTGCCTCTAAAAAGGAGAGGTTTACAACACATGAAGGGGCGATCAATCATAAATCCCAGGGAATCAGTACCATAAAACTCTGTGGCTGCCATCGTTTACGGGCTTCTTGGCACTGTCAGAGACTTTGAAGGATTGTGTCTGAGGAATGAATGTTTCTCTAATCGCATTTGTTTGTTTGCTTGATCTTTTGCAGCAACAGACTGACGATGTGCCAGAGTGCCAATGCGATGTG[G/A]TCACGGTGGAGTGCCATGCTAGTGTGGATTTTGCTTCTCCTCTGCTGCTCTGCAAATGTAGTCAACACCATTCTCTACCAGGTGACCGAGGAGCAGCCGCCCAACACCCTGATTGGCAGCTTGGCATCTGACCAGGGCCTGCCAGACACAGGTCACCTTTACAAGCTGGAGGTTGGTGCTCCTTACCTCCGCGTGGATGGCAAAACCGGGGATATCTACACCACGGAGAACTCTATCGATCGGGAGTCTCTTAAAGACTGTCGCAACCTTTTCGAGGGCGATCCTTGTTTCCTAGAATTTGAGGTGTCTATTACAGACCTGATGAAAGGCACAGGACCTCGGCTTATTGAAGGCCGCATTGAGATCTTGGATGAGAACGACAACACTCCACAATTCTCCTCACCCGTCTTGACATTGTCGATCCCAGAAAACACTCACGTGGGTGCACTTTTTGCAATTCCTGTAGCCACGGACAGGGATTCTGGAAGCAATGGCATTGC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa10175
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000105588 Nonsense 290 1093 2 4
ENSDART00000105588 Nonsense 290 1093 2 4
Genomic Location (Zv9):
Chromosome 14 (position 38830121)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 37215274
GRCz11 14 37555588
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TAGGTGAAGRCCAATGACTCTGACATGGGACCCAATGGTGAGGTTACCTA[C/A]AGCCTCCATCAGCCATCATCACCAGTGATGAGACTTCTAAGCATTGACCG
Long Flanking Sequence:
TCTAGCAAACTACCGATAATTTTGCACAACTTGACTTGCATACTAGACAACCTAATCATATTTAACTCTTCAGAGTCAATGTTCGTTGTATCATATATTGAATAATAATACATTATATGTTATGCTGTTAAGGTGAATGCCATTTTTTGCAATCAAATGAAATGTACTGTTTTAAATTCTTGCAATATTCAGCAAGTATAAGAGTTAGTACAAACTAGTGCATTTAGGTCTTTTTTCAGTTTATAAAGCATATATTTTTTCACATGCATATATATTATTGCTTGCATTAATAATAGTCAATTTCTAGTGCTACATAATAATAATTTAAACCATGTGTGGCCATTGATGTGTAAACCTGTGACTTATATAGTTTGTTAATTAACTTTATGGAACCTTTTTTGTCATGATGTGTTTGTGCTTTGCCTAGTTTAATTTTGAATTTTGTTGTTTTAGGTGAAGGCCAATGACTCTGACATGGGACCCAATGGTGAGGTTACCTA[C/A]AGCCTCCATCAGCCATCATCACCAGTGATGAGACTTCTAAGCATTGACCGCAACACAGGCATCATTTTTGTCAAAGGCTCAGTAGATCGTGAAGAAATCAGCATTCTCAAGTTCTACGTCCAAGCTAAAGACAACGGTCCTCAGTCAAAGAGCTCCAAAGCCCTTGTGACTATCACAGTGAAAGATCAGAATGACAACGCACCCTCCATTAGAATCCGAGGCATTGGCCTTGTAACGCATGAAGATGGTGTCGCTAACATATCAGAGGACATGCCTGTTGGCACAGCTGTGGCTTTGGTGGAGGTATCAGATCGTGATGAGGGCGAAAATGCAGTTGTTACCTGTGTGGTTGCTGGGGATGTCCCGTTCCAGCTACGCTCAGCAAGTGAAACAGGCAATGACCGCAAAAGGAAGTACTTCCTCCAGACGACCACGCTACTGGACTATGAACGGATCAAAGAGTATAGGATTGAAATTGTAGCAGTGGACTCTGGCAACCC
Associated Phenotype:
Not determined