ZMP
rfx6
Ensembl ID:
ZFIN ID:
Description:
DNA-binding protein RFX6 [Source:UniProtKB/Swiss-Prot;Acc:Q5RJA1]
Human Orthologue:
RFX6
Human Description:
regulatory factor X, 6 [Source:HGNC Symbol;Acc:21478]
Mouse Orthologue:
Rfx6
Mouse Description:
regulatory factor X, 6 Gene [Source:MGI Symbol;Acc:MGI:2445208]
Alleles
There are 4 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa17912 | Nonsense | Available for shipment | Available now |
| sa18622 | Essential Splice Site | Available for shipment | Available now |
| sa23789 | Nonsense | Available for shipment | Available now |
| sa29438 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa17912
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000061122 | Nonsense | 35 | 848 | 1 | 18 |
| ENSDART00000132310 | Nonsense | 28 | 841 | 1 | 18 |
Genomic Location (Zv9):
Chromosome 20 (position 42565782)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 20 | 42636941 |
| GRCz11 | 20 | 42534051 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CTGAAGAAGACCTGGGCCATCTGGATTATTCCAAGYCATTCGCTGCRAAA[C/T]AAACGCAGCCAAAGAAAAGCATCAGTCAGATCATCAAGGACAAGAAGAAG
Long Flanking Sequence:
GTCTTCTTGGTGGTTTTAATTTAGCATTCCAGATTTGTTATTTATTTTTTTTAATTTCTCCTTGAACATGCCACTGAAAAGAAACATAGGGAGTCCACTGAAGAATGATGCTTTTTATCAGGCGTCGCAGACAAAGAGAGCTTGCAAAAACGCAGATGACCTCCACGAGACAATTCTTGTTAACCAAGAAAACATGTTTTTCAAAGCCAGGCTTGACGAGGAGGAGGATTCTGGCATTAAATCAGGTAGAGAAAGTCATCTTTGTTGTAAATTGTTTCCCAAGCGGCTTTAATCAAAACTACTGCATTGCTTTCTTTCAAAAAGTGCTGTTACAAATTCTCAATCTGCCGCCGGTGGGTTATGAATAGTTTTAACACACGTCACACAATTGGAAAGCTATGTATGTTATTCATTTGGCAGAAGCGGATGAAAGCAATGCAAGCATCTCCTCTGAAGAAGACCTGGGCCATCTGGATTATTCCAAGCCATTCGCTGCGAAA[C/T]AAACGCAGCCAAAGAAAAGCATCAGTCAGATCATCAAGGACAAGAAGAAGCAGACCCAACTTACTTTACAATGGTACTCTCTCTGTGCACTTTCTTTTTTAACTAAGCAATGCTGATACTGTATGCTTGGGCTTCAATTGTTTTGTTTCATTAGGCTTGAGGACAATTACATAGTTTGTGAAGGTGTTTGTCTGCCACGGTGCATCCTCTACGCTCATTATTTAGACTTTTGTCGGAAGGAGAAATTAGATCCTGCTTGTGCTGCCACTTTCGGAAAGGTAAGAGGCGTTTTTATTTTATTATTTTATATATCTCTTGAATTGCACTCACTGTAAAAAAATATGATCGCTTAGTAATGACCGCATATGCTTTTAGTTAATTGTAACTTATTAAACTAAGTTAATCATCTTCTAACTTATTTTTATAAGTTATTCAAGCTGTTTAAGTTAGTTTAACATAATGCAAGTTCAAGTTACTCAAAAGGTTAATTTGATTTTGAT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa18622
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000061122 | Essential Splice Site | 121 | 848 | 3 | 18 |
| ENSDART00000132310 | Essential Splice Site | 114 | 841 | 3 | 18 |
Genomic Location (Zv9):
Chromosome 20 (position 42563434)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 20 | 42634593 |
| GRCz11 | 20 | 42531703 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
NNAATTTCCTCTTCTWACAACAMGAAGGCTTGGAACCAGAGGCCATTCAAA[G/A]TAAGATAGGCCAGGTTTCTGACTCAAAAACATCATTTAGTGCTTTTTTTT
Long Flanking Sequence:
CCCTAGTAATATTGGCCTGTTTTACAGAAGAAGTGACCTTTAAATAGGAAAATCTTCAGATTCAATTCGTCATGCTAAGCTAAGCTAAAAGTGAGCTCGCCTAATTAAGAAAACTGCTGAATGGATTAAAAAATGATTCAAGTCAACTGTTACCTCTAGGAGACTAGAGGTCTCCCAACCCCAAAACCACAAAAAATGTGGTGTTCATGTATTTAAAGTGTTAACATATGCCAGACCATTTTTAAAATGATCTAAATATCTAATATCTGAAACCTTCATGAACCTTCAGTGCTGATAAAGACCTGCTAAAAGGCTGAACTTTAATATATATACTATGTAATATGTACATTAGCAGACATAAATAGCCTTTGATTTTGTATTTGCGGTGCATGTCAAATGATTGTACAACATTTTAGAGCTTTATTCCTGTCTTTTTAGACCATAAGGCAGAAATTTCCTCTTCTTACAACACGAAGGCTTGGAACCAGAGGCCATTCAAA[G/A]TAAGATAGGCCAGGTTTCTGACTCAAAAACATCATTTAGTGCTTTTTTTTAAATCGACTATTTAAATGCCTGCATCTAAATCCCTGTGTTTGGCTTTTGAATGACTTTCAGGTATCATTATTATGGTATTGGAATCAAGGAGAGCAGTGCATATTATCACTCTGTTTACTCCGGGAAAGGTCTGACACGGTTAGTCTTTCATACCTGTAATTCAGAGCCCTATCGCAAGTCCTTGAAAGTTTTTGAAATATGTGTGTGAATTGGAAAGGATTTTTTTTCATTGTCCTTGCAGAGACAAATCAGATCTCTTGAAACTAATAATTATATTTCATGTTTGGTTTATAATGTTTTATCATATCTATAAATTCTCTTATGTGTTCTGCACAGATTCTCTGGAAGCAAGCTGAAAAATGAGGTTGGTATTTATAATTTAGTACATAAAGTTGAAGTGCTACACTTCATACACAATATCACAATTCTCAGAGGAAACTGAATATGCT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa23789
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000061122 | Nonsense | 318 | 848 | 10 | 18 |
| ENSDART00000132310 | Nonsense | 311 | 841 | 10 | 18 |
Genomic Location (Zv9):
Chromosome 20 (position 42557376)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 20 | 42628535 |
| GRCz11 | 20 | 42525645 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CAGAGAAGAAAGTGCCGATAGCAAGACGATTTGTGTCGTCCTTAAAGAGA[C/T]AGACCTCATTTTTACATCTCGCACAGGTACAGACACTTCTATAATTCTTG
Long Flanking Sequence:
AAGTATTGTATCTGAAATGAAAACTCATACAAATCCATGTGCAATAAGGCCAGCAGCAAAAATCACAGAGCATATGCCTTTTCAGCTCTGTTCTTTCACAATTTGCATGAGCTGTTGTAAAATCAGCTTTTTCCATCAGAACCAATCATTGTTTTCATTATGGATCATAATCACTATTCCCTTATCAAATTTTATCTGAATTGTTTTTCACAGGTTCTGACAGATGTTCTCATTCCCGCTACTATGCAGGATATGCCGGAGAGGTTTGTCTAATAAACTGCTGCATTATTTATCATTTGGTTTTCCTGCAGGTGTGAAATGTGATATCGTTAAGCATTTTTGAGTGAGTTTAAGAAAATATCTCCAGTCTTTTGGCAGATATTCGAAATTTTGCCAAGCACTGGGAACACTGGATGCTGTCTTCCTTGGAGAATCTCCCAGAAATCCTCTCAGAGAAGAAAGTGCCGATAGCAAGACGATTTGTGTCGTCCTTAAAGAGA[C/T]AGACCTCATTTTTACATCTCGCACAGGTACAGACACTTCTATAATTCTTGATTTGGTTTAATATTTAAAAATGATTTACATTATACTTATGTAATTTTATTTCTATTGTACAATAAAATGTTTAATGTTGTTTTCTGAGCCAAAAATATACATCCATAAGTTTTAAAAACTATAATAAAATACAATACAAATCTATATGTAACGAAGGGTCATGAGGTTTAGGGTGTGAGTGTAACGGAGGCCAGCTAGTGAAGGGCTATACAGGTAAACCTCACTCTTCTGACATTTAAAAGTGCTCAAGCAACAGACGCTAGAGGCCATGGTCTTTAGTCTCCTTGTTAGAGCAACCGACTCCCATACAAAGAATCGCCTGTTCTATCTCAGCTCAGAACGGGAGGGGTGCAGTTGGACCGGTGGATTTACATAAATATTTTCATTAACTAACATTATCAAACATGAATAAATACTATAATAAGATGAATAAATACTGTAATACATGT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa29438
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > T
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000061122 | Essential Splice Site | 720 | 848 | 17 | 18 |
| ENSDART00000132310 | Essential Splice Site | 713 | 841 | 17 | 18 |
Genomic Location (Zv9):
Chromosome 20 (position 42540932)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 20 | 42612091 |
| GRCz11 | 20 | 42509201 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AGTTTGCAGATGCTCCTATTGAAACTTTAACATTCATCTTTCTTCTGTCC[A/T]GGATATTACGGCAGCAGCAGTGGTTATGTGGATGCTCCGAGGATGGGCAC
Long Flanking Sequence:
CAAAATAGATAAAATGCGTACACCTAACAAACTTGTTTAATCATACGCAATTTTAAAAAGATGTGTCTTAACACGCTTTTTAAAAACATGAATACTTGGGGATTCTTTCACTTCAAGGGGGAGACAGTTCCAAATTTTTGGAGCATAATGGCTAAAAGAAGTGCCGCCAGATCGCATCAGGTTTACAGGATAAAATTCTTAAAGTCCAGCACTAGAAGAGCGTAGCAAACGGTTTGGATTATATTTTGTTAAACAGTCGAAAATGTAGGAAGGTGTCATGTTGTGTAGTGCTTTATAAACTAATAAAAGAATCTTAAAATTTATCCTTTGGTGCACAGGCAACCAGTGTAATGCTGGTGTAATACAGTGTAATGTTTCTATGCAAAGAAAAAGTACCAAATTTATTATCTCTTTTAATTAAATCAATATGCTGCACAGAAGGTTCAAACTAGTTTGCAGATGCTCCTATTGAAACTTTAACATTCATCTTTCTTCTGTCC[A/T]GGATATTACGGCAGCAGCAGTGGTTATGTGGATGCTCCGAGGATGGGCACATTTATCGATCAGCATGTGTCGGTTATCAGCAGCGTGAGCAGCATTCGCTCAGTTTCGGCCTACGCTGAAGCACACGACCCTCTAAACATCCTGGACGACACCAGCAGGAAGACAAGACCTTACTACACCGAACTGTCCGCAATGGGCACACACACAGCAGGTCAGGGCAAAACAATCCTTCTAGGGGAGCCTGCAGGTAGTTACACAGTCAATTATGGGATAACGAGAATTGGTTCCAATTTAAACTTTTTTCTGAATTTGTTTATCTGTTTCTATAATTTCCCTGACATTAATGTTGTTTTTAATATTTGTTTATGCTTGTGAAGCACGCTGAGTTGCATGTGATGTAGGAAAGGGGGTAATACAAATAAAAACGTATTATTATTTTTATTATTATTATTATAAGGTAGGGGGCACGGTAGCTCAGTGGTTAGCACTGTCGCCTCACA
Associated Phenotype:
Not determined