Busch Lab

ZMP

atrx

Ensembl ID:
ENSDARG00000042236
ZFIN ID:
ZDB-GENE-030912-11
Description:
Atrxl protein [Source:UniProtKB/TrEMBL;Acc:Q7ZUS5]
Human Orthologue:
ATRX
Human Description:
alpha thalassemia/mental retardation syndrome X-linked [Source:HGNC Symbol;Acc:886]
Mouse Orthologue:
Atrx
Mouse Description:
alpha thalassemia/mental retardation syndrome X-linked homolog (human) Gene [Source:MGI Symbol;Acc:M

Alleles

There are 9 alleles of this gene:

Allele Name Consequence Status Availability
sa13757 Nonsense Available for shipment Available now
sa10556 Splice Site, Nonsense Available for shipment Available now
sa15167 Nonsense Available for shipment Available now
sa17647 Essential Splice Site Available for shipment Available now

Mutation Details

Allele Name:
sa13757
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
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Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000061932 Nonsense 361 995 9 14
ENSDART00000125865 Nonsense 251 1620 3 34
ENSDART00000127594 Nonsense 361 2011 9 35

The following transcripts of ENSDARG00000042236 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 14 (position 10871274)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 10366631
GRCz11 14 10672645
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GAAAAAGGCCCATGCTGCTCTGGAGGAATCGCTTGAAAATGAATTYGAAT[C/A]RAAAGGCCTCAAGTTTCAGAACGGAGAGGAGCAACGACCATCAAAMWGTC
Long Flanking Sequence:
CATCTTGCGGAACCTTGGACGAAAAGAGCTGTCTGAAATAATGAGTGAACAAAGCAAATGGCACTGCTATATTTGCTGCCCAGAGCCACTGCAAGATCATGTGAAAACTTGTGAGAAAGTTTTGCTCAATCTTGAATCCTCTTCTAGAAAACCTAAGGGAGAACACGACAAGACAAAGCGTGAAGAGCGCAAACACAAGCATGTGAAACGAGAAAAAACTGCTGTAAATGGACAGGATTATGCCTCTGATGGAGCAGGAACTCTAACCTTTTCCTGTAAGACATTGACAGTTCCGAAAGAGCTTGTCAAAAAGACCAAAAAACTAATTGAGACCACAAATGGTTTGAATCGTACTTTTGTACAGTTCCTCCAGCAAACATCAAAAGGCCAAGAAGCCAGTGCAGTAAGTTACAGACACTTAAAGGCCTTCAAATCAGTATTGGCTGATCTGAAAAAGGCCCATGCTGCTCTGGAGGAATCGCTTGAAAATGAATTTGAAT[C/A]GAAAGGCCTCAAGTTTCAGAACGGAGAGGAGCAACGACCATCAAACAGTCAAAGTGTGGAAAATGCAGTCGTCAACTCGAACCATACCGAGCCCACACCTGTCAAGGAAGATGACTTGGATTGCTCCACCAAGAACCATAATCCTGTGGGAGAAGAGGAAACCCAGCAGGACAGTAACTTGGCTGATGTTGAGATGGAAAGCCCTCCACACTCACCAGAAAAAGCACAGGAGCAATCTGAAGAAAGGTCTGAAGAGAAAGAGAACGAAGAGAAAGAGAACGGAGAGAAAGAGAATGAAGCTAAAGAGCAGGAAATAGCGGACAACTTTGAAGAAGGCTCCGTACCACCTGCTGAAGAATCTCTTGATAAAGACATTGTGTCTATTCCACCTTCTGTCCCAGAGGAACTCTTCGAGATGGTAGAGAGTCTTGCAGTAAAGAAAGAAAACAATGATGACAACTTGACTGATTCTAGTGATAACAAATCCAACACTGAGGTTG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa10556
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > T
Consequence:
Splice Site, Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000061932 Nonsense 417 995 9 14
ENSDART00000125865 Splice Site, Nonsense 307 1620 3 34
ENSDART00000127594 Nonsense 417 2011 9 35

The following transcripts of ENSDARG00000042236 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 14 (position 10871441)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 10366798
GRCz11 14 10672812
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TGGATTGCTCCACCAAGAACCATAAWCCTGTGGGAGAAGAGGAAACCCAG[C/T]AGGACAGTAACTTGGCTGATGTTGAGATGGAAAGCCCTCCACACTCACCA
Long Flanking Sequence:
ACAAGACAAAGCGTGAAGAGCGCAAACACAAGCATGTGAAACGAGAAAAAACTGCTGTAAATGGACAGGATTATGCCTCTGATGGAGCAGGAACTCTAACCTTTTCCTGTAAGACATTGACAGTTCCGAAAGAGCTTGTCAAAAAGACCAAAAAACTAATTGAGACCACAAATGGTTTGAATCGTACTTTTGTACAGTTCCTCCAGCAAACATCAAAAGGCCAAGAAGCCAGTGCAGTAAGTTACAGACACTTAAAGGCCTTCAAATCAGTATTGGCTGATCTGAAAAAGGCCCATGCTGCTCTGGAGGAATCGCTTGAAAATGAATTTGAATCGAAAGGCCTCAAGTTTCAGAACGGAGAGGAGCAACGACCATCAAACAGTCAAAGTGTGGAAAATGCAGTCGTCAACTCGAACCATACCGAGCCCACACCTGTCAAGGAAGATGACTTGGATTGCTCCACCAAGAACCATAATCCTGTGGGAGAAGAGGAAACCCAG[C/T]AGGACAGTAACTTGGCTGATGTTGAGATGGAAAGCCCTCCACACTCACCAGAAAAAGCACAGGAGCAATCTGAAGAAAGGTCTGAAGAGAAAGAGAACGAAGAGAAAGAGAACGGAGAGAAAGAGAATGAAGCTAAAGAGCAGGAAATAGCGGACAACTTTGAAGAAGGCTCCGTACCACCTGCTGAAGAATCTCTTGATAAAGACATTGTGTCTATTCCACCTTCTGTCCCAGAGGAACTCTTCGAGATGGTAGAGAGTCTTGCAGTAAAGAAAGAAAACAATGATGACAACTTGACTGATTCTAGTGATAACAAATCCAACACTGAGGTTGTGGAATCCAAGAAGAGCCTCACAAAACTGGGTAAAAAACTAGTTGTCAAGCTAACACCCGTTCCTCTTAAAATTACCATAAAACGAGATAAGAGCAGGGAACAGTCACCGTCAGAAGACATGGATGGTGAGGCGTTGAAGGATGGTCAAGATAGCAGACGCTCTCCG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa15167
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > G
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000061932 None None 995 None 14
ENSDART00000125865 Nonsense 1500 1620 31 34
ENSDART00000127594 Nonsense 1834 2011 32 35

The following transcripts of ENSDARG00000042236 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 14 (position 10929421)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 10424778
GRCz11 14 10730792
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GCTCTGCTGTTCTTTTAGGGGCTGTCCATGCGTTTCAACCAGCCGTCTTA[T/G]TCTCAGATGGGTATGGGAGCACCAAACTCCTACTTCCCCTTCAACGTGGC
Long Flanking Sequence:
TGTTTACGAGCTCCGAGCACCGAAGACCCAATTAGAGGGCGGGTTTGCTGCATCTGCCTCGGTAGCTCATTTACACACAAACACAGCCATCCTGCTGACCTTCGTGAAGGGAACGTTCTGTTTAGAGCTATAAGACAAACACAGCTTGGGCAGGACCCTAACAGAGGTTCACATGGGTGCACATCAGGATTTTTTGGATCCTCCAGTGATCTGTTGGCTGGAAATTATTTTTCGCCACGCATCTTTGCCAGATCGTAGACAACTCATGTCAAAGTTGCGAGTCGAGTGGGAAAAAAAGTTCTGAAAGCGATGCTTTGATTACTCTAATGTGATGAAAGACTTGACTCATCTGTCAGGCCAGACCTGATTTGAAGATTATTCATAATTGGGATCTTTCTGTGTGACCTCATTTCAGTAAATGAAGTCTGGTTCTGTATGACTGACAGACAAGCTCTGCTGTTCTTTTAGGGGCTGTCCATGCGTTTCAACCAGCCGTCTTA[T/G]TCTCAGATGGGTATGGGAGCACCAAACTCCTACTTCCCCTTCAACGTGGCCGCCTTGGCCTCAATGAGCAACCAACAGTTGGAGGTAAGTAATGAGCTCCACATGCACTTTTCACATTCCTTCAGCCGGCAGCTAATTGTGGCATGCGTCCCTAGGAACCAACATTTGCCGTTGTGTTCTGCCAGCTGCTATTTACATGTGCTATGTATCTCAATGAAAATATCAAATTCAGAGTTGTTTTCATCCTGGGCTTGTTTCATCTCGTCTGGTGTTTTCTTCTCACACTTTGTTTTTCCTCTATGTGTAAGGATTTGATTAACCAAGGTCGACAGAAAGTGTTGGAAGCATCTAGTGCTCTGAAGACGGTGCCTAGGGAAGCACTGGAGGACATTGTTGCACAAGTGGTAAGTGAAAGGCAATTCTCTACACTAACACAGTTTATTGTAAACGCCTAGAACGAAGTTCTTTCCGGTTGATTGCTGTTAGTGAACATCCAAACG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa17647
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > G
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000061932 None None 995 None 14
ENSDART00000125865 Essential Splice Site 1603 1620 33 34
ENSDART00000127594 Essential Splice Site 1937 2011 34 35

The following transcripts of ENSDARG00000042236 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 14 (position 10933146)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 10428503
GRCz11 14 10734517
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CAAACACAGGGAGGCCATTTATCGTGATGTCCTCAGCAAGCAACAAACTG[T/G]AAGTCTACTCATCTCCTTGCTNGTTTTTTGACTTCTTGTGTTTCTACTGG
Long Flanking Sequence:
AGCTAAAATGTATTTAACTTACACTAAACTAGAGGTCTAAAGAGATTTGCCTAATTCTGTAAAGATCATTCTCAAGCTAATGGCCACTTGGAACATCATAGCAACCAGCAAGAACAATTGCTTAACAATAGTCATGGTCATTCCTAATGATGAAAATTGTGTCGTAAGGACAATGGACAGAACGTGCATGGCCAAAGTATACTTTGGGCTTTGAGGCTGTGCTTTTTGACTGTATGCTTTGCTTTGTCTTCAGTATGAAGTTTGTGTTGGGCTGAGTTCTGAACAACTGCTAAATGTGTTTGTGTGTCTGATGAGCATGCAAGTGTTTGTTGAGGTCTGCAGAATCTAACAGGTGTGGTGTTTTTGGCAGTGGAAGGAGAATCCAAGTTTACCAGAGGCCCAGGTTCACTCCATGGCTCTTGGGAGGCAGGCTGGGTTCGAGCTGGAAGTCAAACACAGGGAGGCCATTTATCGTGATGTCCTCAGCAAGCAACAAACTG[T/G]AAGTCTACTCATCTCCTTGCTGGTTTTTTGACTTCTTGTGTTTCTACTGGTGCTTAAGTGATAAAAGTTTTAAACTTAACGAGGAAATGCCAAAATTATTTTTTTAGGCCACCTATAGGTTCTTAAAAACTTTTTTAATTAGGAGTGCATTGAGTTTTTGGCCACTGAAAATTATCGGTCGAAAATGGCATGACTCAGACCAGCATTACTCGCGTTACTGAGCAAACTCAGAGCACTTTTTAATCTACTTTAGCTCTCTTTGCCAGTCTCTTTGCAGTCCTTACTTTTAAACGGATTACATAAAAAGAGATTATTTGTTTTCGACTTGAATTGGTTAATGCAGAAGTAGACATATCAAGCTTTATATAGATATCATAAATCATCATCTTTGTTGATTATTTGCTGAGTTTCCTTTCATTTTAGTGACGTGTTTTTCTGACCACAGTCTGCACGCGTCTCATGCAGACGCTTGAAATAATAATGCCTCGTGGATGTGGTCG
Associated Phenotype:
Not determined