ZMP
atrx
Ensembl ID:
ZFIN ID:
Description:
Atrxl protein [Source:UniProtKB/TrEMBL;Acc:Q7ZUS5]
Human Orthologue:
ATRX
Human Description:
alpha thalassemia/mental retardation syndrome X-linked [Source:HGNC Symbol;Acc:886]
Mouse Orthologue:
Atrx
Mouse Description:
alpha thalassemia/mental retardation syndrome X-linked homolog (human) Gene [Source:MGI Symbol;Acc:M
Alleles
There are 9 alleles of this gene:
Allele Name | Consequence | Status | Availability |
---|---|---|---|
sa13757 | Nonsense | Available for shipment | Available now |
sa10556 | Splice Site, Nonsense | Available for shipment | Available now |
sa15167 | Nonsense | Available for shipment | Available now |
sa17647 | Essential Splice Site | Available for shipment | Available now |
Mutation Details
Allele Name:
sa13757
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000061932 | Nonsense | 361 | 995 | 9 | 14 |
ENSDART00000125865 | Nonsense | 251 | 1620 | 3 | 34 |
ENSDART00000127594 | Nonsense | 361 | 2011 | 9 | 35 |
The following transcripts of ENSDARG00000042236 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 14 (position 10871274)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 14 | 10366631 |
GRCz11 | 14 | 10672645 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GAAAAAGGCCCATGCTGCTCTGGAGGAATCGCTTGAAAATGAATTYGAAT[C/A]RAAAGGCCTCAAGTTTCAGAACGGAGAGGAGCAACGACCATCAAAMWGTC
Long Flanking Sequence:
CATCTTGCGGAACCTTGGACGAAAAGAGCTGTCTGAAATAATGAGTGAACAAAGCAAATGGCACTGCTATATTTGCTGCCCAGAGCCACTGCAAGATCATGTGAAAACTTGTGAGAAAGTTTTGCTCAATCTTGAATCCTCTTCTAGAAAACCTAAGGGAGAACACGACAAGACAAAGCGTGAAGAGCGCAAACACAAGCATGTGAAACGAGAAAAAACTGCTGTAAATGGACAGGATTATGCCTCTGATGGAGCAGGAACTCTAACCTTTTCCTGTAAGACATTGACAGTTCCGAAAGAGCTTGTCAAAAAGACCAAAAAACTAATTGAGACCACAAATGGTTTGAATCGTACTTTTGTACAGTTCCTCCAGCAAACATCAAAAGGCCAAGAAGCCAGTGCAGTAAGTTACAGACACTTAAAGGCCTTCAAATCAGTATTGGCTGATCTGAAAAAGGCCCATGCTGCTCTGGAGGAATCGCTTGAAAATGAATTTGAAT[C/A]GAAAGGCCTCAAGTTTCAGAACGGAGAGGAGCAACGACCATCAAACAGTCAAAGTGTGGAAAATGCAGTCGTCAACTCGAACCATACCGAGCCCACACCTGTCAAGGAAGATGACTTGGATTGCTCCACCAAGAACCATAATCCTGTGGGAGAAGAGGAAACCCAGCAGGACAGTAACTTGGCTGATGTTGAGATGGAAAGCCCTCCACACTCACCAGAAAAAGCACAGGAGCAATCTGAAGAAAGGTCTGAAGAGAAAGAGAACGAAGAGAAAGAGAACGGAGAGAAAGAGAATGAAGCTAAAGAGCAGGAAATAGCGGACAACTTTGAAGAAGGCTCCGTACCACCTGCTGAAGAATCTCTTGATAAAGACATTGTGTCTATTCCACCTTCTGTCCCAGAGGAACTCTTCGAGATGGTAGAGAGTCTTGCAGTAAAGAAAGAAAACAATGATGACAACTTGACTGATTCTAGTGATAACAAATCCAACACTGAGGTTG
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa10556
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > T
Consequence:
Splice Site, Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000061932 | Nonsense | 417 | 995 | 9 | 14 |
ENSDART00000125865 | Splice Site, Nonsense | 307 | 1620 | 3 | 34 |
ENSDART00000127594 | Nonsense | 417 | 2011 | 9 | 35 |
The following transcripts of ENSDARG00000042236 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 14 (position 10871441)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 14 | 10366798 |
GRCz11 | 14 | 10672812 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TGGATTGCTCCACCAAGAACCATAAWCCTGTGGGAGAAGAGGAAACCCAG[C/T]AGGACAGTAACTTGGCTGATGTTGAGATGGAAAGCCCTCCACACTCACCA
Long Flanking Sequence:
ACAAGACAAAGCGTGAAGAGCGCAAACACAAGCATGTGAAACGAGAAAAAACTGCTGTAAATGGACAGGATTATGCCTCTGATGGAGCAGGAACTCTAACCTTTTCCTGTAAGACATTGACAGTTCCGAAAGAGCTTGTCAAAAAGACCAAAAAACTAATTGAGACCACAAATGGTTTGAATCGTACTTTTGTACAGTTCCTCCAGCAAACATCAAAAGGCCAAGAAGCCAGTGCAGTAAGTTACAGACACTTAAAGGCCTTCAAATCAGTATTGGCTGATCTGAAAAAGGCCCATGCTGCTCTGGAGGAATCGCTTGAAAATGAATTTGAATCGAAAGGCCTCAAGTTTCAGAACGGAGAGGAGCAACGACCATCAAACAGTCAAAGTGTGGAAAATGCAGTCGTCAACTCGAACCATACCGAGCCCACACCTGTCAAGGAAGATGACTTGGATTGCTCCACCAAGAACCATAATCCTGTGGGAGAAGAGGAAACCCAG[C/T]AGGACAGTAACTTGGCTGATGTTGAGATGGAAAGCCCTCCACACTCACCAGAAAAAGCACAGGAGCAATCTGAAGAAAGGTCTGAAGAGAAAGAGAACGAAGAGAAAGAGAACGGAGAGAAAGAGAATGAAGCTAAAGAGCAGGAAATAGCGGACAACTTTGAAGAAGGCTCCGTACCACCTGCTGAAGAATCTCTTGATAAAGACATTGTGTCTATTCCACCTTCTGTCCCAGAGGAACTCTTCGAGATGGTAGAGAGTCTTGCAGTAAAGAAAGAAAACAATGATGACAACTTGACTGATTCTAGTGATAACAAATCCAACACTGAGGTTGTGGAATCCAAGAAGAGCCTCACAAAACTGGGTAAAAAACTAGTTGTCAAGCTAACACCCGTTCCTCTTAAAATTACCATAAAACGAGATAAGAGCAGGGAACAGTCACCGTCAGAAGACATGGATGGTGAGGCGTTGAAGGATGGTCAAGATAGCAGACGCTCTCCG
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa15167
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > G
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000061932 | None | None | 995 | None | 14 |
ENSDART00000125865 | Nonsense | 1500 | 1620 | 31 | 34 |
ENSDART00000127594 | Nonsense | 1834 | 2011 | 32 | 35 |
The following transcripts of ENSDARG00000042236 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 14 (position 10929421)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 14 | 10424778 |
GRCz11 | 14 | 10730792 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GCTCTGCTGTTCTTTTAGGGGCTGTCCATGCGTTTCAACCAGCCGTCTTA[T/G]TCTCAGATGGGTATGGGAGCACCAAACTCCTACTTCCCCTTCAACGTGGC
Long Flanking Sequence:
TGTTTACGAGCTCCGAGCACCGAAGACCCAATTAGAGGGCGGGTTTGCTGCATCTGCCTCGGTAGCTCATTTACACACAAACACAGCCATCCTGCTGACCTTCGTGAAGGGAACGTTCTGTTTAGAGCTATAAGACAAACACAGCTTGGGCAGGACCCTAACAGAGGTTCACATGGGTGCACATCAGGATTTTTTGGATCCTCCAGTGATCTGTTGGCTGGAAATTATTTTTCGCCACGCATCTTTGCCAGATCGTAGACAACTCATGTCAAAGTTGCGAGTCGAGTGGGAAAAAAAGTTCTGAAAGCGATGCTTTGATTACTCTAATGTGATGAAAGACTTGACTCATCTGTCAGGCCAGACCTGATTTGAAGATTATTCATAATTGGGATCTTTCTGTGTGACCTCATTTCAGTAAATGAAGTCTGGTTCTGTATGACTGACAGACAAGCTCTGCTGTTCTTTTAGGGGCTGTCCATGCGTTTCAACCAGCCGTCTTA[T/G]TCTCAGATGGGTATGGGAGCACCAAACTCCTACTTCCCCTTCAACGTGGCCGCCTTGGCCTCAATGAGCAACCAACAGTTGGAGGTAAGTAATGAGCTCCACATGCACTTTTCACATTCCTTCAGCCGGCAGCTAATTGTGGCATGCGTCCCTAGGAACCAACATTTGCCGTTGTGTTCTGCCAGCTGCTATTTACATGTGCTATGTATCTCAATGAAAATATCAAATTCAGAGTTGTTTTCATCCTGGGCTTGTTTCATCTCGTCTGGTGTTTTCTTCTCACACTTTGTTTTTCCTCTATGTGTAAGGATTTGATTAACCAAGGTCGACAGAAAGTGTTGGAAGCATCTAGTGCTCTGAAGACGGTGCCTAGGGAAGCACTGGAGGACATTGTTGCACAAGTGGTAAGTGAAAGGCAATTCTCTACACTAACACAGTTTATTGTAAACGCCTAGAACGAAGTTCTTTCCGGTTGATTGCTGTTAGTGAACATCCAAACG
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa17647
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > G
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000061932 | None | None | 995 | None | 14 |
ENSDART00000125865 | Essential Splice Site | 1603 | 1620 | 33 | 34 |
ENSDART00000127594 | Essential Splice Site | 1937 | 2011 | 34 | 35 |
The following transcripts of ENSDARG00000042236 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 14 (position 10933146)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 14 | 10428503 |
GRCz11 | 14 | 10734517 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CAAACACAGGGAGGCCATTTATCGTGATGTCCTCAGCAAGCAACAAACTG[T/G]AAGTCTACTCATCTCCTTGCTNGTTTTTTGACTTCTTGTGTTTCTACTGG
Long Flanking Sequence:
AGCTAAAATGTATTTAACTTACACTAAACTAGAGGTCTAAAGAGATTTGCCTAATTCTGTAAAGATCATTCTCAAGCTAATGGCCACTTGGAACATCATAGCAACCAGCAAGAACAATTGCTTAACAATAGTCATGGTCATTCCTAATGATGAAAATTGTGTCGTAAGGACAATGGACAGAACGTGCATGGCCAAAGTATACTTTGGGCTTTGAGGCTGTGCTTTTTGACTGTATGCTTTGCTTTGTCTTCAGTATGAAGTTTGTGTTGGGCTGAGTTCTGAACAACTGCTAAATGTGTTTGTGTGTCTGATGAGCATGCAAGTGTTTGTTGAGGTCTGCAGAATCTAACAGGTGTGGTGTTTTTGGCAGTGGAAGGAGAATCCAAGTTTACCAGAGGCCCAGGTTCACTCCATGGCTCTTGGGAGGCAGGCTGGGTTCGAGCTGGAAGTCAAACACAGGGAGGCCATTTATCGTGATGTCCTCAGCAAGCAACAAACTG[T/G]AAGTCTACTCATCTCCTTGCTGGTTTTTTGACTTCTTGTGTTTCTACTGGTGCTTAAGTGATAAAAGTTTTAAACTTAACGAGGAAATGCCAAAATTATTTTTTTAGGCCACCTATAGGTTCTTAAAAACTTTTTTAATTAGGAGTGCATTGAGTTTTTGGCCACTGAAAATTATCGGTCGAAAATGGCATGACTCAGACCAGCATTACTCGCGTTACTGAGCAAACTCAGAGCACTTTTTAATCTACTTTAGCTCTCTTTGCCAGTCTCTTTGCAGTCCTTACTTTTAAACGGATTACATAAAAAGAGATTATTTGTTTTCGACTTGAATTGGTTAATGCAGAAGTAGACATATCAAGCTTTATATAGATATCATAAATCATCATCTTTGTTGATTATTTGCTGAGTTTCCTTTCATTTTAGTGACGTGTTTTTCTGACCACAGTCTGCACGCGTCTCATGCAGACGCTTGAAATAATAATGCCTCGTGGATGTGGTCG
Associated Phenotype:
Not determined