Busch Lab

ZMP

plxnc1

Ensembl ID:
ENSDARG00000015278
ZFIN ID:
ZDB-GENE-030131-1620
Description:
Novel protein similar to vertebrate plexin C1 (PLXNC1) [Source:UniProtKB/TrEMBL;Acc:Q5RGW1]
Human Orthologue:
PLXNC1
Human Description:
plexin C1 [Source:HGNC Symbol;Acc:9106]
Mouse Orthologue:
Plxnc1
Mouse Description:
plexin C1 Gene [Source:MGI Symbol;Acc:MGI:1890127]

Alleles

There are 4 alleles of this gene:

Allele Name Consequence Status Availability
sa13332 Nonsense Available for shipment Available now
sa1749 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa13332
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000004222 Nonsense 396 1252 11 33
ENSDART00000135735 Nonsense 202 1056 6 27
Genomic Location (Zv9):
Chromosome 4 (position 17381526)
Other Location(s):
Assembly Chromosome Position
GRCz10 4 18324366
GRCz11 4 18313342
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
AGRAAYCTGGAMTCTGTCACYAAARTCCGTATTCAGGGGGATCTGGRCTG[T/A]ATTGCTAAAGAGTGAGACTGTGTGTCTGTGTTCAGTGATGTACWGWAAAT
Long Flanking Sequence:
AACCACTATTGATACAGAAATTTCATTGCACTAACTAAAGAAAACTTGGAAAGTAAATGAACAGACTCTTTTTTTCTACTTTTTAGGATGCATGTAAGGATCTACTCTCTGAGTACAAAGTAAGTTTCATTATGAATATTTAAGGCCAGCTTCACTTAATAAGAATGCTATTTTTTTAGTATGTTTTAAAAATTAAGGTAACTTTATGAGAATTTGACATTTGTTACACTTTTAAGAACAATTTTCTAATATAAAGCAATTGCTTTTAATATTATTAGCAAATGATTTGTCACGATCATCATTATAAATGCTTATGTATGTATGTGTATTTAATTTTCTAAAATATTTACAAGAACTACATGCTATTGTGTTTTGTAGGAGCCAGAGATTCTCTCTTTAGAGCCCCACAAAGTTTCTTTTAATGGCAGAAACAATGTTTTACTAAGAGGAAGGAACCTGGACTCTGTCACCAAAATCCGTATTCAGGGGGATCTGGGCTG[T/A]ATTGCTAAAGAGTGAGACTGTGTGTCTGTGTTCAGTGATGTACTGAAAATGAATCTGTGTAGACTCAGACCTTATAAATGTGCATGAATGTTTTCCTCCAGATCTCCAGTGTTTGATCCCTCCAGTGACACTTTAGTGTTCAACATTCCTCCCAGTGAATCTAAAGGAACAGTGAAAATGTGTGTTGTTACTCCTGACAACCGCTGTCATGGCAACAGCATCATCACTTACAGTTCCCAGCCCAGATGCACAGGAGTACAGCCTAGAAACAGCTGGAGAAGGTAAGACCATTTCTTCGATCACCTTCTACGTCACATCTGTGCCTTAACATTACATATATTTAAATTGGGGGATCTAATAGCATACAGTCCATTTTAATCAACAAATTTACAAGAATGATGTTTATATAGAAAATGTCAGATTTGTAAATTAATGGTCTACACATATATGCAAGACAGCACAGAATGAAAGCAGAAGTAAAAGTCATTGGTCATTTTCTC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa1749
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000004222 Nonsense 977 1252 24 33
ENSDART00000135735 Nonsense 775 1056 19 27
Genomic Location (Zv9):
Chromosome 4 (position 17363989)
Other Location(s):
Assembly Chromosome Position
GRCz10 4 18306829
GRCz11 4 18295805
KASP Assay ID:
554-1742.1 (used for ordering genotyping assays)
KASP Sequence:
ACCTCAGAAATTCGAGGGCACGTTACCATGTTAAACACTCTGAAACATTA[T/A]CAGGTGAGTCCATGACAACAAAACATGGTGTAAACATGACCATGTTTGAG
Long Flanking Sequence:
TCTCTAAAGTGTTTCCTTCTCTATTCCTGCTCATTAAAAGAAGAACCGTTTTATAAATAATTGTACTTGTCACATTTATAATTGCGAATACATCTCAAGTCATTAAATGAATTTCTCCACCTGTAGAAACTGAAGGTGGTGTTTGCCGTGGGCACTGGAGAAGAGATCAGCGAATCCTTAGAGGTCATCGCACTGACCTGCGACACAATTCAGCAAGTCAAGGAGAAAATCTTACAGACATTTCAGCGCAAGTTTGGTTTCCGCTACACACAGCAGATCAGGGATATAGAAATCGGTTAGCAGTTCCCTCTTCATCCTAATATTTCATAATACGTCTTTAAGTTTGAAAGACTTACAAGAGCTAATTCCTGTTTGGTGCCTCTGTTTGCTTTTGCAATTACAGAATATGAGAAGGAAGGAAAGTTTGTCATGCTACAGGAAGTTGATGACACCTCAGAAATTCGAGGGCACGTTACCATGTTAAACACTCTGAAACATTA[T/A]CAGGTGAGTCCATGACAACAAAACATGGTGTAAACATGACCATGTTTGAGACTTTTCAGTGAGACAGCTGTTAAAAAAGGCAAAAAAAATAAAAAAAAATAACACATACTTGTATTAAAGGCCGTGACTTTGTGTTTTCAAATGTCTAAAGCGCATAGAAACATAATCGTTGCTTTATTTTTAACAGATTTAGGTTAAATTATTTTTGTCTACTACTGTAGATGCAATGATGAAGTTTCATTGACTGAAGTAAAATATAAGAAACTAAATCAAAGAATAAAGTGGACAGATATATGACCTGCTCAGTGTTTATTCTCACAGTAAAACTCATGAAGTGCTTTGAAATGTGCATTTGTTTTCTATGTTTGACGTAATCTTAACTGAAAATGTAGGGAGAAAGAGACAAAAAGTAGCTCCTCCCTCCTTAAAAAACAGCCAATAGTGTTTTGTTTTATCATAGCTCTGCCAATGGGAGTGGTTGAGCTCAAGCGCATCAAACG
Associated Phenotype:
Normal
Stage Entity Quality Tag
Larval:Day 5
ZFS:0000037
whole organism
ZFA:0001094
quality
PATO:0000001
normal
PATO:0000461