Busch Lab

ZMP

rfx3

Ensembl ID:
ENSDARG00000014550
ZFIN ID:
ZDB-GENE-061103-253
Description:
Transcription factor RFX3 [Source:UniProtKB/Swiss-Prot;Acc:A0JMF8]
Human Orthologue:
RFX3
Human Description:
regulatory factor X, 3 (influences HLA class II expression) [Source:HGNC Symbol;Acc:9984]
Mouse Orthologue:
Rfx3
Mouse Description:
regulatory factor X, 3 (influences HLA class II expression) Gene [Source:MGI Symbol;Acc:MGI:106582]

Alleles

There are 3 alleles of this gene:

Allele Name Consequence Status Availability
sa31758 Nonsense Available for shipment Available now
sa16866 Nonsense Available for shipment Available now
sa17373 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa31758
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000041236 Nonsense 40 765 2 17
ENSDART00000144234 Nonsense 40 382 1 8
ENSDART00000144882 Nonsense 40 542 2 13
Genomic Location (Zv9):
Chromosome 10 (position 612590)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 609363
GRCz11 10 625318
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGCAGCCTGCGGTCAGTGGCCAGCAGGTGGCGTCTCAGGTGCCCGTCCAG[C/T]AGCAGGTGAGCCTCTGCACACATCTCTCTCTCTCTCTCTGTGTGCTGTGA
Long Flanking Sequence:
ATATATATATATATATATATATATATATATATAAATATATATTTGTGTGTGTGTGTGTGTGTGTGTATATACACTTCCTACTTTCTTTATTGATCCGCAATGACTTCTGAGACATCTAGAGCGAGTGCTGTGCTCAAATCTGCATCATTGATATCAGGTATGCATCAGGGTTCTGTCGCGGGTCCTCTGTTCTTGTGCTCTTGATTATTGGAACTGAACTTTGGTGCTTGATGATGACGTTACATCAATACACAAGACTGCAGCATCGCTTATTAACGCACACGGAGAAATGAAAATTCTGATACTGATATCTAAAAACACTAGTTTAACATCATGCGAGCGTTAATCTGAGACTGATGTTGATTTTGTGTTTTGAAGGCGCCATGCAGACCCCAGAGGCAGGCGCTGACTCCACCGTGTCCACCGTGCCCCTCCAGACCAGCGTGCCTGTGCAGCCTGCGGTCAGTGGCCAGCAGGTGGCGTCTCAGGTGCCCGTCCAG[C/T]AGCAGGTGAGCCTCTGCACACATCTCTCTCTCTCTCTCTGTGTGCTGTGATTGGCTGAGCTTCCTACACATCTCTCTCATGATGACAACTACAACAAACTATTCTTTTATTCTGTATAGCTTCTGCCGGTATCAAATGTTCTTGTGATTAACTGCTGAAGCTTTTATCATGATATACAGTATTTTTATGACATTGACTTCATTTACAGGTATAATAAATGTGTAAATAAACGTTTGCTGCATCCCAATTTGCATTCTTATACATCGTTCTAAAGGTATGCACTTTTTAGTGAAGGAAAATGTACTTACTTTTGAGTGTGTAACAGATGAGTGTGCAAACTTTGGTACATACTGCTTCCTCATTAACAGATCTTTATGTTGCTTAGTTACGAGACCTGTCAATCATCCCGACTCATCCATATTTCTTTCATAATTAATTTCCTACCATATTGGAGATGCAGCTGTGTGTTAATCTGCCATTCACGAGTCTTTCATGCAGAG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa16866
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000041236 Nonsense 139 765 4 17
ENSDART00000144234 Nonsense 139 382 3 8
ENSDART00000144882 Nonsense 139 542 4 13
ENSDART00000041236 Nonsense 139 765 4 17
ENSDART00000144234 Nonsense 139 382 3 8
ENSDART00000144882 Nonsense 139 542 4 13
Genomic Location (Zv9):
Chromosome 10 (position 605029)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 601802
GRCz11 10 617757
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CTGGCTATGGGGCTCACCGGAGGYCAGAKCATCAGCAGCTCAGGAGCTTA[T/A]CTGATTRGAGGAAACTCCATGGATGGCTCCGCCCCTCACGGCGCCGCACA
Long Flanking Sequence:
AAGTATGGCAAGGACGCGTCTCCCTCCCGGTCTTCAAATAAGTCGCGCACCCTTGCCATCGATGCCATCGTCCATAGCGATGTTTCACATTAGACATCGTACGATGCCAAATTGATTCCGGGGGATTATCACTCGTTTGCGGGCATTATGAGTCCCGCAAGTGGATAGAGACTCCCGGAACTTCCGGGACACTTGGTGTCTGAATATCACGTTTAACATCTATAGTGAGACGCGATCCAGCAGTACAGTGATCTATTCTCTAGGATAAATAAAGTAACCTAAGCTTGTGCTGTGTTCAGACGGGCGTACTCGTACTCGGAGCCACAGCTCTACAACCAGAACAGCAGCGGGAACTACTTCGACACGCAGGGCGGCGGAGGCAGCGCGGCACAGGTCAGCACCGTAGTGTCCACTCACAGCATGGCCAACAACGGCAACGGCACCGGCGCTCTGGCTATGGGGCTCACCGGAGGCCAGATCATCAGCAGCTCAGGAGCTTA[T/A]CTGATTGGAGGAAACTCCATGGATGGCTCCGCCCCTCACGGCGCCGCACAGACCACCAGAGCCTCCCCTGCTACGGTAAGCACCAATCACAGAACGGTTTCAGTTGTGTTGCTCTTTTTAAATGCGCAGTTTGAACAAGTCATGTTGGAGTGTAGTTCAGCTACTCCATTTCAAGTTAACAGATCTGTACTCTCTAAATAAAGGCGAGAGGTTCTTTAAAAGCTCTCACTTTAACGGAAGCTAGATATAAACATCTTAAAGCTGAATTAGTCTGGATTGTTTCCAATACTGAATGATCTAGAATCTTTGCATGCATACATACTCATTCAGACAGCTCCTCCTTCAAAATCTGAGCAGAAGCAGGAGAAATAATGAATAAGAGTCTTTATGTCAGAGACACATATGTTGTCTTGCTGTGTTCCCTATGCAGACAACTCATTAGGGTTCGGAACGGAGCCAATGTGTACGTCTGTGGCTAGAACAGATTGATTTGAACGTCG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa17373
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000041236 Nonsense 139 765 4 17
ENSDART00000144234 Nonsense 139 382 3 8
ENSDART00000144882 Nonsense 139 542 4 13
ENSDART00000041236 Nonsense 139 765 4 17
ENSDART00000144234 Nonsense 139 382 3 8
ENSDART00000144882 Nonsense 139 542 4 13
Genomic Location (Zv9):
Chromosome 10 (position 605029)
Other Location(s):
Assembly Chromosome Position
GRCz10 10 601802
GRCz11 10 617757
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CTGGCTATGGGGCTCACCGGAGGYCAGAKCATCAGCAGCTCAGGAGCTTA[T/A]CTGATTRGAGGAAACTCCATGGATGGCTCCGCCCCTCACGGCGCCGCACA
Long Flanking Sequence:
AAGTATGGCAAGGACGCGTCTCCCTCCCGGTCTTCAAATAAGTCGCGCACCCTTGCCATCGATGCCATCGTCCATAGCGATGTTTCACATTAGACATCGTACGATGCCAAATTGATTCCGGGGGATTATCACTCGTTTGCGGGCATTATGAGTCCCGCAAGTGGATAGAGACTCCCGGAACTTCCGGGACACTTGGTGTCTGAATATCACGTTTAACATCTATAGTGAGACGCGATCCAGCAGTACAGTGATCTATTCTCTAGGATAAATAAAGTAACCTAAGCTTGTGCTGTGTTCAGACGGGCGTACTCGTACTCGGAGCCACAGCTCTACAACCAGAACAGCAGCGGGAACTACTTCGACACGCAGGGCGGCGGAGGCAGCGCGGCACAGGTCAGCACCGTAGTGTCCACTCACAGCATGGCCAACAACGGCAACGGCACCGGCGCTCTGGCTATGGGGCTCACCGGAGGCCAGATCATCAGCAGCTCAGGAGCTTA[T/A]CTGATTGGAGGAAACTCCATGGATGGCTCCGCCCCTCACGGCGCCGCACAGACCACCAGAGCCTCCCCTGCTACGGTAAGCACCAATCACAGAACGGTTTCAGTTGTGTTGCTCTTTTTAAATGCGCAGTTTGAACAAGTCATGTTGGAGTGTAGTTCAGCTACTCCATTTCAAGTTAACAGATCTGTACTCTCTAAATAAAGGCGAGAGGTTCTTTAAAAGCTCTCACTTTAACGGAAGCTAGATATAAACATCTTAAAGCTGAATTAGTCTGGATTGTTTCCAATACTGAATGATCTAGAATCTTTGCATGCATACATACTCATTCAGACAGCTCCTCCTTCAAAATCTGAGCAGAAGCAGGAGAAATAATGAATAAGAGTCTTTATGTCAGAGACACATATGTTGTCTTGCTGTGTTCCCTATGCAGACAACTCATTAGGGTTCGGAACGGAGCCAATGTGTACGTCTGTGGCTAGAACAGATTGATTTGAACGTCG
Associated Phenotype:
Not determined