Busch Lab

ZMP

si:ch211-108g16.2

Ensembl ID:
ENSDARG00000077157
ZFIN ID:
ZDB-GENE-090313-8
Human Orthologue:
SYNPO2
Human Description:
synaptopodin 2 [Source:HGNC Symbol;Acc:17732]
Mouse Orthologue:
Synpo2
Mouse Description:
synaptopodin 2 Gene [Source:MGI Symbol;Acc:MGI:2153070]

Alleles

There are 6 alleles of this gene:

Allele Name Consequence Status Availability
sa9982 Nonsense Available for shipment Available now
sa13742 Nonsense Available for shipment Available now
sa45072 Nonsense Mutation detected in F1 DNA Not yet available
sa16016 Nonsense Available for shipment Available now
sa17339 Nonsense Available for shipment Available now
sa1204 Essential Splice Site, Missense F2 line generated Not yet available

Mutation Details

Allele Name:
sa9982
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
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Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000111550 Nonsense 68 581 1 3
ENSDART00000134192 Nonsense 62 151 2 2
ENSDART00000137869 Nonsense 62 617 2 2
Genomic Location (Zv9):
Chromosome 1 (position 24846551)
Other Location(s):
Assembly Chromosome Position
GRCz10 1 25270249
GRCz11 1 25963963
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CAAAAAGGGAAATTGTGATGCCTCCTCCTCAAGAAAGTAAACAATCYCCA[C/T]AAGATTTMTATGCAAGGCAAGAGAAGCATTATCAAGGGCAGCCATTTCAG
Long Flanking Sequence:
ACAGGACTAAAATGGAGATACAGTTGGCATGACAGCTGGAAAAAAGTCAACCCTAAATGTAAAAATAACACTGCTTTTTACTGTGGCCAACAGCAAGAGGGTGTTGATTTTTAAGACGTGTCAACAAAAGGGTCAGAAGGTAACACTGGTTAGCCACAGTATATCTAAATGACAGATTTCGGGACAGGAAAGACATTGTACACCACAAAGTAAGTCAGGATTTACACTCTCATCAAAGACATTTCAATGCTCAGAAACAAAGTACCACTTTGAGCTACATCAGAATATCTTATTATTAACTAAATAACTTTGAGACAATGGAGCATCTTCCACAGACAAAAGGCAAAGGAGTTTTGATGTTTGCCAAGAGGCGTCAAAGGATGGATGAGATTTCTGCAGAACATGAGGAAATGAGACGAAAAGGCATACCAGTTGATGCAATTGAGGAAACAAAAAGGGAAATTGTGATGCCTCCTCCTCAAGAAAGTAAACAATCCCCA[C/T]AAGATTTCTATGCAAGGCAAGAGAAGCATTATCAAGGGCAGCCATTTCAGCTACAGATGTTGCAACAATCAGCAAACAGCATGAATGGTCTGGATCCACACCAAGGTTCGGCTGTTCCAAAACCCCTTGTGTCCAACAGAACTGCTAAACCCTTCTTTAGCGGTCATAATCAAGGCCAAAAAACTTTTTCACCAGTTAGAGGTGTCTCAAGCCCAACATCTAAAAAACCTGAAAACATATTCAAGGTTCCTATTCCGGTAAACACAACACCAAACGTTTGGTCTCCCACATCAGACGTTATTGCCTCTCGTGATGAACGTATTGCCATTCCTGCTATTAAGACAGGGATCTTGCCAGAAACAAAAAGGAGAGGAGCAAACAAGACAGACTTAAAAGAAAGGCCTCTACATCAGAAGAAAAGAGATGAAAAGTCCTTAACAGAGTTCGTTCAAGAGGAGGACCTTCTCAGTCTAGGCGCTGAAGCATGCAATTTCATGCAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa13742
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
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Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000111550 Nonsense 71 581 1 3
ENSDART00000134192 Nonsense 65 151 2 2
ENSDART00000137869 Nonsense 65 617 2 2
Genomic Location (Zv9):
Chromosome 1 (position 24846540)
Other Location(s):
Assembly Chromosome Position
GRCz10 1 25270238
GRCz11 1 25963952
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ATTGTGATGCCTCCTCCTCAAGAAAGTAAACAATCYCCAYAAGATTTMTA[T/A]GCAAGGCAAGAGAAGCATTATCAAGGGCAGCCATTTCAGCTACAGATGTT
Long Flanking Sequence:
ATGGAGATACAGTTGGCATGACAGCTGGAAAAAAGTCAACCCTAAATGTAAAAATAACACTGCTTTTTACTGTGGCCAACAGCAAGAGGGTGTTGATTTTTAAGACGTGTCAACAAAAGGGTCAGAAGGTAACACTGGTTAGCCACAGTATATCTAAATGACAGATTTCGGGACAGGAAAGACATTGTACACCACAAAGTAAGTCAGGATTTACACTCTCATCAAAGACATTTCAATGCTCAGAAACAAAGTACCACTTTGAGCTACATCAGAATATCTTATTATTAACTAAATAACTTTGAGACAATGGAGCATCTTCCACAGACAAAAGGCAAAGGAGTTTTGATGTTTGCCAAGAGGCGTCAAAGGATGGATGAGATTTCTGCAGAACATGAGGAAATGAGACGAAAAGGCATACCAGTTGATGCAATTGAGGAAACAAAAAGGGAAATTGTGATGCCTCCTCCTCAAGAAAGTAAACAATCCCCACAAGATTTCTA[T/A]GCAAGGCAAGAGAAGCATTATCAAGGGCAGCCATTTCAGCTACAGATGTTGCAACAATCAGCAAACAGCATGAATGGTCTGGATCCACACCAAGGTTCGGCTGTTCCAAAACCCCTTGTGTCCAACAGAACTGCTAAACCCTTCTTTAGCGGTCATAATCAAGGCCAAAAAACTTTTTCACCAGTTAGAGGTGTCTCAAGCCCAACATCTAAAAAACCTGAAAACATATTCAAGGTTCCTATTCCGGTAAACACAACACCAAACGTTTGGTCTCCCACATCAGACGTTATTGCCTCTCGTGATGAACGTATTGCCATTCCTGCTATTAAGACAGGGATCTTGCCAGAAACAAAAAGGAGAGGAGCAAACAAGACAGACTTAAAAGAAAGGCCTCTACATCAGAAGAAAAGAGATGAAAAGTCCTTAACAGAGTTCGTTCAAGAGGAGGACCTTCTCAGTCTAGGCGCTGAAGCATGCAATTTCATGCAAGCTCCAACAGT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa45072
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000111550 Nonsense 78 581 1 3
ENSDART00000134192 Nonsense 72 151 2 2
ENSDART00000137869 Nonsense 72 617 2 2
Genomic Location (Zv9):
Chromosome 1 (position 24846519)
Other Location(s):
Assembly Chromosome Position
GRCz10 1 25270217
GRCz11 1 25963931
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GAAAGTAAACAATCCCCACAAGATTTCTATGCAAGGCAAGAGAAGCATTA[T/A]CAAGGGCAGCCATTTCAGCTACAGATGTTGCAACAATCAGCAAACAGCAT
Long Flanking Sequence:
CAGCTGGAAAAAAGTCAACCCTAAATGTAAAAATAACACTGCTTTTTACTGTGGCCAACAGCAAGAGGGTGTTGATTTTTAAGACGTGTCAACAAAAGGGTCAGAAGGTAACACTGGTTAGCCACAGTATATCTAAATGACAGATTTCGGGACAGGAAAGACATTGTACACCACAAAGTAAGTCAGGATTTACACTCTCATCAAAGACATTTCAATGCTCAGAAACAAAGTACCACTTTGAGCTACATCAGAATATCTTATTATTAACTAAATAACTTTGAGACAATGGAGCATCTTCCACAGACAAAAGGCAAAGGAGTTTTGATGTTTGCCAAGAGGCGTCAAAGGATGGATGAGATTTCTGCAGAACATGAGGAAATGAGACGAAAAGGCATACCAGTTGATGCAATTGAGGAAACAAAAAGGGAAATTGTGATGCCTCCTCCTCAAGAAAGTAAACAATCCCCACAAGATTTCTATGCAAGGCAAGAGAAGCATTA[T/A]CAAGGGCAGCCATTTCAGCTACAGATGTTGCAACAATCAGCAAACAGCATGAATGGTCTGGATCCACACCAAGGTTCGGCTGTTCCAAAACCCCTTGTGTCCAACAGAACTGCTAAACCCTTCTTTAGCGGTCATAATCAAGGCCAAAAAACTTTTTCACCAGTTAGAGGTGTCTCAAGCCCAACATCTAAAAAACCTGAAAACATATTCAAGGTTCCTATTCCGGTAAACACAACACCAAACGTTTGGTCTCCCACATCAGACGTTATTGCCTCTCGTGATGAACGTATTGCCATTCCTGCTATTAAGACAGGGATCTTGCCAGAAACAAAAAGGAGAGGAGCAAACAAGACAGACTTAAAAGAAAGGCCTCTACATCAGAAGAAAAGAGATGAAAAGTCCTTAACAGAGTTCGTTCAAGAGGAGGACCTTCTCAGTCTAGGCGCTGAAGCATGCAATTTCATGCAAGCTCCAACAGTCAAGCAGAAAAATCCTCCACC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa16016
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
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Mutation:
A > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000111550 Nonsense 249 581 1 3
ENSDART00000134192 None None 151 None 2
ENSDART00000137869 Nonsense 243 617 2 2
ENSDART00000111550 Nonsense 249 581 1 3
ENSDART00000134192 None None 151 None 2
ENSDART00000137869 Nonsense 243 617 2 2
Genomic Location (Zv9):
Chromosome 1 (position 24846008)
Other Location(s):
Assembly Chromosome Position
GRCz10 1 25269706
GRCz11 1 25963420
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TCATGCAAGCTCCAACAGTCAAGCAGRAAAMTCCTCCACCTGTCCTACCC[A/T]AACCTGTTATCAACCCAGCTCACCCTCTCTGGTCTGCAGWTGGTCATGCC
Long Flanking Sequence:
CATTTCAGCTACAGATGTTGCAACAATCAGCAAACAGCATGAATGGTCTGGATCCACACCAAGGTTCGGCTGTTCCAAAACCCCTTGTGTCCAACAGAACTGCTAAACCCTTCTTTAGCGGTCATAATCAAGGCCAAAAAACTTTTTCACCAGTTAGAGGTGTCTCAAGCCCAACATCTAAAAAACCTGAAAACATATTCAAGGTTCCTATTCCGGTAAACACAACACCAAACGTTTGGTCTCCCACATCAGACGTTATTGCCTCTCGTGATGAACGTATTGCCATTCCTGCTATTAAGACAGGGATCTTGCCAGAAACAAAAAGGAGAGGAGCAAACAAGACAGACTTAAAAGAAAGGCCTCTACATCAGAAGAAAAGAGATGAAAAGTCCTTAACAGAGTTCGTTCAAGAGGAGGACCTTCTCAGTCTAGGCGCTGAAGCATGCAATTTCATGCAAGCTCCAACAGTCAAGCAGAAAAATCCTCCACCTGTCCTACCC[A/T]AACCTGTTATCAACCCAGCTCACCCTCTCTGGTCTGCAGATGGTCATGCCGTTTCAACGAGCCTCCTAATGACATCAAGTTCAGCTCAAGCTATGGGGCACAATCAGGTGCAGGCGGGCCATACAAAACAGCACCCTGCTGCAGCCTGGACTCCAGAACCACATCAGACACCACATAAACTTCGTGCTGGTCCCTCCAAATCCAAAACCCCATGGATAAAGTCACAAAGTGAAGAGAACTCTGTTGCTTCCTGCCCACCCCAACATCTTAGCACATACCTTCCAGCATCAAAGGCCCCATCAGCTTCTCATCAAGAGTATTCATCAGAAACAGGTGCATCTGAGGGTCTGAACCTTAAAGGAAAAGGAGCTGAACTGTTTGCACGGAGACAAACTCGTATGGAAAAATTCATTGTGGACAATGAGACTGTGCGAACCAATAAGGTCAGACCCTCATCACCAACGCTCTCAATGCCAAGCACCTGGAAATACTCTTCTAAC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa17339
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000111550 Nonsense 249 581 1 3
ENSDART00000134192 None None 151 None 2
ENSDART00000137869 Nonsense 243 617 2 2
ENSDART00000111550 Nonsense 249 581 1 3
ENSDART00000134192 None None 151 None 2
ENSDART00000137869 Nonsense 243 617 2 2
Genomic Location (Zv9):
Chromosome 1 (position 24846008)
Other Location(s):
Assembly Chromosome Position
GRCz10 1 25269706
GRCz11 1 25963420
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TCATGCAAGCTCCAACAGTCAAGCAGRAAAMTCCTCCACCTGTCCTACCC[A/T]AACCTGTTATCAACCCAGCTCACCCTCTCTGGTCTGCAGWTGGTCATGCC
Long Flanking Sequence:
CATTTCAGCTACAGATGTTGCAACAATCAGCAAACAGCATGAATGGTCTGGATCCACACCAAGGTTCGGCTGTTCCAAAACCCCTTGTGTCCAACAGAACTGCTAAACCCTTCTTTAGCGGTCATAATCAAGGCCAAAAAACTTTTTCACCAGTTAGAGGTGTCTCAAGCCCAACATCTAAAAAACCTGAAAACATATTCAAGGTTCCTATTCCGGTAAACACAACACCAAACGTTTGGTCTCCCACATCAGACGTTATTGCCTCTCGTGATGAACGTATTGCCATTCCTGCTATTAAGACAGGGATCTTGCCAGAAACAAAAAGGAGAGGAGCAAACAAGACAGACTTAAAAGAAAGGCCTCTACATCAGAAGAAAAGAGATGAAAAGTCCTTAACAGAGTTCGTTCAAGAGGAGGACCTTCTCAGTCTAGGCGCTGAAGCATGCAATTTCATGCAAGCTCCAACAGTCAAGCAGAAAAATCCTCCACCTGTCCTACCC[A/T]AACCTGTTATCAACCCAGCTCACCCTCTCTGGTCTGCAGATGGTCATGCCGTTTCAACGAGCCTCCTAATGACATCAAGTTCAGCTCAAGCTATGGGGCACAATCAGGTGCAGGCGGGCCATACAAAACAGCACCCTGCTGCAGCCTGGACTCCAGAACCACATCAGACACCACATAAACTTCGTGCTGGTCCCTCCAAATCCAAAACCCCATGGATAAAGTCACAAAGTGAAGAGAACTCTGTTGCTTCCTGCCCACCCCAACATCTTAGCACATACCTTCCAGCATCAAAGGCCCCATCAGCTTCTCATCAAGAGTATTCATCAGAAACAGGTGCATCTGAGGGTCTGAACCTTAAAGGAAAAGGAGCTGAACTGTTTGCACGGAGACAAACTCGTATGGAAAAATTCATTGTGGACAATGAGACTGTGCGAACCAATAAGGTCAGACCCTCATCACCAACGCTCTCAATGCCAAGCACCTGGAAATACTCTTCTAAC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa1204
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > G
Consequence:
Essential Splice Site, Missense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000111550 Essential Splice Site 322 581 1 3
ENSDART00000134192 None None 151 None 2
ENSDART00000137869 Missense 317 617 2 2
Genomic Location (Zv9):
Chromosome 1 (position 24845786)
Other Location(s):
Assembly Chromosome Position
GRCz10 1 25269484
GRCz11 1 25963198
KASP Assay ID:
554-1113.1 (used for ordering genotyping assays)
KASP Sequence:
CACATAAACTTCGTGCTGGTCCCTCCAAATCCAAAACCCCATGGATAAAG[T/G]CACAAAGTGAAGAGAACTCTGTTGCTTCCTGCCCACCCCAACATCTTAGC
Long Flanking Sequence:
CAACACCAAACGTTTGGTCTCCCACATCAGACGTTATTGCCTCTCGTGATGAACGTATTGCCATTCCTGCTATTAAGACAGGGATCTTGCCAGAAACAAAAAGGAGAGGAGCAAACAAGACAGACTTAAAAGAAAGGCCTCTACATCAGAAGAAAAGAGATGAAAAGTCCTTAACAGAGTTCGTTCAAGAGGAGGACCTTCTCAGTCTAGGCGCTGAAGCATGCAATTTCATGCAAGCTCCAACAGTCAAGCAGAAAAATCCTCCACCTGTCCTACCCAAACCTGTTATCAACCCAGCTCACCCTCTCTGGTCTGCAGATGGTCATGCCGTTTCAACGAGCCTCCTAATGACATCAAGTTCAGCTCAAGCTATGGGGCACAATCAGGTGCAGGCGGGCCATACAAAACAGCACCCTGCTGCAGCCTGGACTCCAGAACCACATCAGACACCACATAAACTTCGTGCTGGTCCCTCCAAATCCAAAACCCCATGGATAAAG[T/G]CACAAAGTGAAGAGAACTCTGTTGCTTCCTGCCCACCCCAACATCTTAGCACATACCTTCCAGCATCAAAGGCCCCATCAGCTTCTCATCAAGAGTATTCATCAGAAACAGGTGCATCTGAGGGTCTGAACCTTAAAGGAAAAGGAGCTGAACTGTTTGCACGGAGACAAACTCGTATGGAAAAATTCATTGTGGACAATGAGACTGTGCGAACCAATAAGGTCAGACCCTCATCACCAACGCTCTCAATGCCAAGCACCTGGAAATACTCTTCTAACATCCGTGCACCACCTCCAGTGTCCTACAACCCTATTTTATCACCCTTTTATCCCCTTGCAGCAGTTAAACAACCCCCACCTGCGACTAGTCCAAAGACAAAGCCGAAGGTAAACAAGGAGAAGAAGAATCCTCCCCCCAAGCATCTCAATGTTCTGGATGTCATGAAACATCAGCCTTACCAGTTGGATTCCTCCCTATTCACCTACAACTTTACACCAGAG
Associated Phenotype:
Normal
Stage Entity Quality Tag
Larval:Day 5
ZFS:0000037		 whole organism
ZFA:0001094		 quality
PATO:0000001		 normal
PATO:0000461