ZMP
hmg20b
Ensembl ID:
ZFIN ID:
Description:
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-relate
Human Orthologue:
HMG20B
Human Description:
high-mobility group 20B [Source:HGNC Symbol;Acc:5002]
Mouse Orthologue:
Hmg20b
Mouse Description:
high mobility group 20 B Gene [Source:MGI Symbol;Acc:MGI:1341190]
Alleles
There are 4 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa17207 | Essential Splice Site | Available for shipment | Available now |
| sa29763 | Nonsense | Mutation detected in F1 DNA | Not yet available |
| sa37496 | Nonsense | Mutation detected in F1 DNA | Not yet available |
| sa24153 | Nonsense | Available for shipment | Available now |
Mutation Details
Allele Name:
sa17207
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
A > C
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000061617 | Essential Splice Site | None | 301 | 2 | 9 |
Genomic Location (Zv9):
Chromosome 22 (position 20490345)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 22 | 20147038 |
| GRCz11 | 22 | 20172016 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TTGTTAGTCTTTTATATTTCATCTAAAYATATTTTCTTTTTTGYCTTCCC[A/C]GAATTCCGTGAATCCACGTTATGGGTGGTGTAAAGCAAGAGCAGACTGAT
Long Flanking Sequence:
TCGAATGTCATTCCTTTGCTGTAAATGCTTGTGCTCCTGTATTATTGTTTTTTTTTCCCCTGCAACCTTGATGTGCGTGCATCCTGAATGTTTACAAACCGGTAATTCGCCTATACAAAATCTAAAAGAGAAAATTTGAAAAAGTCGCTGCCCCCTATTGACGAGCACTCGCAACTACAGCTGTCACTCAAAAGTACCTTTACTACAAAATGCGTAATTGTATCGTTTTGAGAGCCAGGGAATCGCAATACGTTTTTAGTATCGATATATTATGCAACACTAATCATATATCTTAGCTTTGAAACCCAATTTTTGTTTTAAATAGGCTTTTTACCCTCCCATAAGTGCTGTTGTTGAAATGGCATTATGAAAACATAACGTTAACTATAATAATAACTGTGTTGTCATAATTTGTAGTTTAGTATGTACTTGTAGATAGAAATTGATTAATTGTTAGTCTTTTATATTTCATCTAAATATATTTTCTTTTTTGCCTTCCC[A/C]GAATTCCGTGAATCCACGTTATGGGTGGTGTAAAGCAAGAGCAGACTGATGCTCCTGCATCTAAAGACTCTCAGCAGACTGATTCGCCACAGGAAGAGGTTAGATACAGACTGCTTTAACATCATCAATAACACTGTCTATCACATGTCATGCATAACTGAATCATCATAAAAGGTTTTGTGGACAGGCGCACTCATATTTTCCCCCATACACTCCTCCTAAATTGAATTCATGTCAATTTGAATTGATTTGTTACAGAACCAATCGACTTCACAGCCGGTAAAGAAGCGAGGTTGGCCAAAAGGAAAGAAGAGAAAGAAGGTATTGCCGAACGGCCCCAAGGCTCCAGTTACCGGTTATGTCCGTTTCTTGAATGAGAGACGGGAACACATCCGGGCCCTTCATCCAGATCTTCCCTTTCCAGAAATCACCAAGAGACTCGGGGCAGAATGGAGCCGCCTGGCACCTCATGATAAACAGGTATTATTATGGTTATTAAG
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa29763
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000061617 | Nonsense | 18 | 301 | 2 | 9 |
Genomic Location (Zv9):
Chromosome 22 (position 20490417)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 22 | 20147110 |
| GRCz11 | 22 | 20172088 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGGGTGGTGTAAAGCAAGAGCAGACTGATGCTCCTGCATCTAAAGACTCT[C/T]AGCAGACTGATTCGCCACAGGAAGAGGTTAGATACAGACTGCTTTAACAT
Long Flanking Sequence:
GTGCGTGCATCCTGAATGTTTACAAACCGGTAATTCGCCTATACAAAATCTAAAAGAGAAAATTTGAAAAAGTCGCTGCCCCCTATTGACGAGCACTCGCAACTACAGCTGTCACTCAAAAGTACCTTTACTACAAAATGCGTAATTGTATCGTTTTGAGAGCCAGGGAATCGCAATACGTTTTTAGTATCGATATATTATGCAACACTAATCATATATCTTAGCTTTGAAACCCAATTTTTGTTTTAAATAGGCTTTTTACCCTCCCATAAGTGCTGTTGTTGAAATGGCATTATGAAAACATAACGTTAACTATAATAATAACTGTGTTGTCATAATTTGTAGTTTAGTATGTACTTGTAGATAGAAATTGATTAATTGTTAGTCTTTTATATTTCATCTAAATATATTTTCTTTTTTGCCTTCCCAGAATTCCGTGAATCCACGTTATGGGTGGTGTAAAGCAAGAGCAGACTGATGCTCCTGCATCTAAAGACTCT[C/T]AGCAGACTGATTCGCCACAGGAAGAGGTTAGATACAGACTGCTTTAACATCATCAATAACACTGTCTATCACATGTCATGCATAACTGAATCATCATAAAAGGTTTTGTGGACAGGCGCACTCATATTTTCCCCCATACACTCCTCCTAAATTGAATTCATGTCAATTTGAATTGATTTGTTACAGAACCAATCGACTTCACAGCCGGTAAAGAAGCGAGGTTGGCCAAAAGGAAAGAAGAGAAAGAAGGTATTGCCGAACGGCCCCAAGGCTCCAGTTACCGGTTATGTCCGTTTCTTGAATGAGAGACGGGAACACATCCGGGCCCTTCATCCAGATCTTCCCTTTCCAGAAATCACCAAGAGACTCGGGGCAGAATGGAGCCGCCTGGCACCTCATGATAAACAGGTATTATTATGGTTATTAAGGAATGACTGGCCAGTTGTTTTATTTTTAATATGGGAAAACCTCACTCTGATTAAATGCAACCACTTTTTTTA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa37496
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000061617 | Nonsense | 102 | 301 | 4 | 9 |
Genomic Location (Zv9):
Chromosome 22 (position 20490929)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 22 | 20147622 |
| GRCz11 | 22 | 20172600 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GGAAAACCTCACTCTGATTAAATGCAACCACTTTTTTTAAAACAGCGTTA[C/A]CTTGATGAAGCCGAAAGGGACAAAATGCAGTATGCACGAGAACTCAGGGA
Long Flanking Sequence:
TCGCCACAGGAAGAGGTTAGATACAGACTGCTTTAACATCATCAATAACACTGTCTATCACATGTCATGCATAACTGAATCATCATAAAAGGTTTTGTGGACAGGCGCACTCATATTTTCCCCCATACACTCCTCCTAAATTGAATTCATGTCAATTTGAATTGATTTGTTACAGAACCAATCGACTTCACAGCCGGTAAAGAAGCGAGGTTGGCCAAAAGGAAAGAAGAGAAAGAAGGTATTGCCGAACGGCCCCAAGGCTCCAGTTACCGGTTATGTCCGTTTCTTGAATGAGAGACGGGAACACATCCGGGCCCTTCATCCAGATCTTCCCTTTCCAGAAATCACCAAGAGACTCGGGGCAGAATGGAGCCGCCTGGCACCTCATGATAAACAGGTATTATTATGGTTATTAAGGAATGACTGGCCAGTTGTTTTATTTTTAATATGGGAAAACCTCACTCTGATTAAATGCAACCACTTTTTTTAAAACAGCGTTA[C/A]CTTGATGAAGCCGAAAGGGACAAAATGCAGTATGCACGAGAACTCAGGGAGTATCAGAAAAGCGAAGCTTATCAGATCACGTGTGCAAAAGTTCAAGACAAGAGAATCAAAAGAGGTGAGTTTTTTTTTTCTTTGACAGTTTTTTGGTATCGTTATTTTGCGCTTAAATGTATTTGTCTTTTTGTCAAGTATGCAATAGTGATGGGATAAAAAATGTTTTACACTTTATTACACAATTTATAAATCTTTCATTTACATTAACTCATATTAGTAATGGAAGAAACAAAGCTTTAAACCAACTGAACCAATTGCTTTGCAAAATGATATATTTAGATTCGGGGCACCACAAACCACACATGCTAGGGACACCTGCTGGTCAAAACTGTGCAAATGCAACAAAAACTCAGGCAAAACATACATTAGAATTGAATTTTTCAAATACATTGTAAACTTTTAATTGAAAGTATATCGCATAAATGCACGTAGCTTATCATCTAAAA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa24153
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000061617 | Nonsense | 233 | 301 | 7 | 9 |
Genomic Location (Zv9):
Chromosome 22 (position 20493727)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 22 | 20150420 |
| GRCz11 | 22 | 20175398 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AGCGCCTGGAAGCTGAGCTAGGCCAAGATGAGCTTCGTACGCAGGCCCTA[C/T]AGCGCCACCTACAGGCTATCAAACAGACGCTAGTCAGCAGCTTGGCTACT
Long Flanking Sequence:
TCTTCTTTTTTATGTTGAACACAAGAGGAGATATTTTGAAGAATGTTGGAATCAGTACATCCATAGTAGGAAAAAATGTTATAAAACTCCAACATTCTTCTAAATATTTTAGTAAATGGAAACATTTTTTAAACAGTTGGAAACAGTTGATATATAAAAGACTTCCTGTATATTGACTCATGTGATGGATTTCCTTCAGAACTCAGACTTCACGGCCAGATTTGATGTCCCTATTTTCACAGAAGAATTTTTGGACCAAAACAAAGGTAAATTATACGGAGTTCTTGTGCTTAAAACTACACAAATGTCTATAGAAAAGCTATTTTCCTAAAATGACCTTTTTTCCAGCAAGAGAAGCAGAGCTCCGGCGTTTGCGCAAGGCTAATGTGGAGTTCGAGGAGCAGAATGCTGTTCTCCAGAAACACATTGCCGACATGTTCAGTGCTAAAGAGCGCCTGGAAGCTGAGCTAGGCCAAGATGAGCTTCGTACGCAGGCCCTA[C/T]AGCGCCACCTACAGGCTATCAAACAGACGCTAGTCAGCAGCTTGGCTACTGTGCCTTTACCAGGTCAGTACGATACAGTGCCTATAATACAAATACCGTAATTGATATTTAACAACTTTGTGCTTTATGTTGTTTATCAGTAGCGATAGCTTCGTGATCATTGGCCAAGTTGTAATAAGTGTCTTAAGTTGACAGAAAACTAGAAAGCAAAACATTGCAATATTGACAGATTTTTCTTCAATGTGTATACACCACAAAATTAAGATGCTGCATAGATGCAGAGATGTGGCCTTTTCAGTAACAAACTGCTCTCTGCACATCAGCATTTAAAGCTTGTTTGACAGCTGTGCGCTTGTTTTAAATTGTTGCAATTCTATAAAAAATGTCCTGGTAATAAAATAAATGGGTGTGCGAGAGATCTGCAGAGTAGATGGCAACATCAACAGCCTGAGGTATCAAGACATTTGTCCTGCCTTTTAAATTACAAACCACAGAAGAGG
Associated Phenotype:
Not determined