Busch Lab

ZMP

syne1a

Ensembl ID:
ENSDARG00000089890
ZFIN ID:
ZDB-GENE-030131-4172
Description:
Novel protein similar to vertebrate spectrin repeat containing, nuclear envelope 1 (SYNE1) [Source:U
Human Orthologue:
ACTN4
Human Description:
actinin, alpha 4 [Source:HGNC Symbol;Acc:166]
Mouse Orthologue:
Actn4
Mouse Description:
actinin alpha 4 Gene [Source:MGI Symbol;Acc:MGI:1890773]

Alleles

There are 7 alleles of this gene:

Allele Name Consequence Status Availability
sa31045 Essential Splice Site, Missense Mutation detected in F1 DNA Not yet available
sa43446 Essential Splice Site, Missense Mutation detected in F1 DNA Not yet available
sa17206 Nonsense Available for shipment Available now
sa5674 Nonsense F2 line generated Not yet available
sa3056 Nonsense F2 line generated Not yet available
sa32292 Essential Splice Site Available for shipment Available now
sa37038 Essential Splice Site Mutation detected in F1 DNA Not yet available

Mutation Details

Allele Name:
sa31045
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Essential Splice Site, Missense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000063385 Essential Splice Site 116 1551 None 35
ENSDART00000135213 Missense 117 1277 4 28
ENSDART00000063385 Essential Splice Site 116 1551 None 35
ENSDART00000135213 Missense 117 1277 4 28
Genomic Location (Zv9):
Chromosome 20 (position 26147298)
Other Location(s):
Assembly Chromosome Position
GRCz10 20 26218601
GRCz11 20 26117691
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CTGGGTCGCCAATGTTGGAAGAGCGCTCAAGTTTCTGGAGGGCAGAAGGG[T/C]AAGGCAGTCCATTCCCACAGTGCTTTTTGCTCAGGTGTACGGCTCCAGGT
Long Flanking Sequence:
TTAAACATTTTATTGACAAAAATAAATGCAATACAATACAAATGATGCTACCAAAGACAGTGTATTCACTGCACAATATTAGCACTCCCACACATGAAAACCCATACTACCGCTGAACAGTCCCACAAGGCTTGTGGTGCCTCAGGTATTTGCAATGCTGTAACAATCAATACTCTGTACCAAGTTGCACATGAGGATTTGATTTTTTTTAACTCATCTCTCTTGCCATCTATTTGGTGTCATCTTATTTTCCCATTTTTTTCTCTCTGTACTATATATAACTCTCCTGCTTGTCTTGCTGTCTCTTTCTGTTTGTTTTCATCTCCTTCTCCCCATTCATTGCTGGGTATTTACATTTTCCTCTGTCTTCCACCATTTTCCTTTTGTCTGCTGTGTATCCTCTCCCGCCGGACAGCCGTGTGAGCAGGGCCGCAAGCTGAGGAGAATCCACTGGGTCGCCAATGTTGGAAGAGCGCTCAAGTTTCTGGAGGGCAGAAGGG[T/C]AAGGCAGTCCATTCCCACAGTGCTTTTTGCTCAGGTGTACGGCTCCAGGTTATAACCACTCACTCTGACCCGCACAACCCCTTCCCGTTCCACTCTGATTCTGCTCTGTCCCACAAGAGCTGCTTCTGTATTTTATGTGCAGTTCTCATTCCGAACGACATGGAATTATGTTTAATTCATTTTTCACGGCCAAGTATTAGATTTAGGAATCCATTAGAAGATGATGAGTGTAGATTTATGAGGTGATGTTGACACCTCGGATCTGAAATCATTCTCGTTATTGAGGTCTAGTCCTGAGTCATGGTATTATAAATCAGTCTGTGGTGTCTCACATGTGGAGATGAGCTTCCCTCATAGACTCTTCTTCTCTCTGTGGTTGCTATGACTAAATTAAAGGACTAAATAGGTGATAATGTAAAGTTATGTACTTTTTATGCTTTCAGCATGTGTAGATATTATTTCTAATAAACTTATTTTTTAATTTCCTGTTTAAAAAGAAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa43446
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Essential Splice Site, Missense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000063385 Essential Splice Site 116 1551 None 35
ENSDART00000135213 Missense 117 1277 4 28
ENSDART00000063385 Essential Splice Site 116 1551 None 35
ENSDART00000135213 Missense 117 1277 4 28
Genomic Location (Zv9):
Chromosome 20 (position 26147298)
Other Location(s):
Assembly Chromosome Position
GRCz10 20 26218601
GRCz11 20 26117691
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CTGGGTCGCCAATGTTGGAAGAGCGCTCAAGTTTCTGGAGGGCAGAAGGG[T/C]AAGGCAGTCCATTCCCACAGTGCTTTTTGCTCAGGTGTACGGCTCCAGGT
Long Flanking Sequence:
TTAAACATTTTATTGACAAAAATAAATGCAATACAATACAAATGATGCTACCAAAGACAGTGTATTCACTGCACAATATTAGCACTCCCACACATGAAAACCCATACTACCGCTGAACAGTCCCACAAGGCTTGTGGTGCCTCAGGTATTTGCAATGCTGTAACAATCAATACTCTGTACCAAGTTGCACATGAGGATTTGATTTTTTTTAACTCATCTCTCTTGCCATCTATTTGGTGTCATCTTATTTTCCCATTTTTTTCTCTCTGTACTATATATAACTCTCCTGCTTGTCTTGCTGTCTCTTTCTGTTTGTTTTCATCTCCTTCTCCCCATTCATTGCTGGGTATTTACATTTTCCTCTGTCTTCCACCATTTTCCTTTTGTCTGCTGTGTATCCTCTCCCGCCGGACAGCCGTGTGAGCAGGGCCGCAAGCTGAGGAGAATCCACTGGGTCGCCAATGTTGGAAGAGCGCTCAAGTTTCTGGAGGGCAGAAGGG[T/C]AAGGCAGTCCATTCCCACAGTGCTTTTTGCTCAGGTGTACGGCTCCAGGTTATAACCACTCACTCTGACCCGCACAACCCCTTCCCGTTCCACTCTGATTCTGCTCTGTCCCACAAGAGCTGCTTCTGTATTTTATGTGCAGTTCTCATTCCGAACGACATGGAATTATGTTTAATTCATTTTTCACGGCCAAGTATTAGATTTAGGAATCCATTAGAAGATGATGAGTGTAGATTTATGAGGTGATGTTGACACCTCGGATCTGAAATCATTCTCGTTATTGAGGTCTAGTCCTGAGTCATGGTATTATAAATCAGTCTGTGGTGTCTCACATGTGGAGATGAGCTTCCCTCATAGACTCTTCTTCTCTCTGTGGTTGCTATGACTAAATTAAAGGACTAAATAGGTGATAATGTAAAGTTATGTACTTTTTATGCTTTCAGCATGTGTAGATATTATTTCTAATAAACTTATTTTTTAATTTCCTGTTTAAAAAGAAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa17206
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000063385 Nonsense 479 1551 14 35
ENSDART00000135213 Nonsense 466 1277 12 28
Genomic Location (Zv9):
Chromosome 20 (position 26226958)
Other Location(s):
Assembly Chromosome Position
GRCz10 20 26298261
GRCz11 20 26197351
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TTTGTTTGTGCAGGAGATCTTAAGGCTTCTTGAAAGACACAAACAGACCT[T/A]GCAGTTAATACACCGMGACAGATGTGTTAATAATATGCCTATTCCCACAG
Long Flanking Sequence:
AGTTGGCGGTTCATTCCGTTGTAGCGACCCCGGGTTTATAAAGGGACTAAGCCGAAAAAGAAAATAAATGAATGAATTAAAATAATTTAAAATAATAAAATAAAATAAAACACACTATGGGAGAGCACACAAATTCAAAGAGTTTTTTTTTTTCCGCAGCTCTTGGATTGGCATCTTCAGCTGGACAGCGGTTTGCCACATCCACTGGGGGAGGTCGGTGTGTGGTTACATCAGGCAGAGGAGATTCTGCGAGAGGAACTGATCCCTCAACAAGCCCACGATGAGACCGCCAAAGCTATTCACAAAAAACGACTGCGTGACCAGGTCAAGCATGATTAAAAACTCTCTGTTTCTCTGTATGAATGCTTATGGCGTTGTGGAGAAAGCATGAATGGAAATCTATTAATTAGTTACAAACCTCAGCTTAAAAGTAATCCTGCATACTCTGTGTTTGTTTGTGCAGGAGATCTTAAGGCTTCTTGAAAGACACAAACAGACCT[T/A]GCAGTTAATACACCGAGACAGATGTGTTAATAATATGCCTATTCCCACAGAACAACTGCAAGACATGGCAGAGCGGTAAACATTATAATATATCAAATACTAATAATGATTATATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATTTGAACTGCTTTCAGATTACACTACATATCTACCTCTTCACACATTCACTTGAGCAAACTGGAATTCTGGGAGTCGAAATACAGCATGCTGGCATTTTTAACACTGGCTGAGTCCAAACTGAAATCCTGGATCATTAAATACGGCCGACTGGAGTCAATGGAGCTTCTGCTACAAAGCTATGGTGTAAGTTTAATCCTAAATAGATTACACATAATTACTATTTATTTAAAATGATAAATTATTATTTTAGAATAACTTGTTATAGCCCTCATTTCTTATTGAAATTTAATAAAT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa5674
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000063385 Nonsense 1265 1551 30 35
ENSDART00000135213 Nonsense 1252 1277 28 28
ENSDART00000063385 Nonsense 1265 1551 30 35
ENSDART00000135213 Nonsense 1252 1277 28 28
Genomic Location (Zv9):
Chromosome 20 (position 26243351)
Other Location(s):
Assembly Chromosome Position
GRCz10 20 26314654
GRCz11 20 26213744
KASP Assay ID:
554-2633.1 (used for ordering genotyping assays)
KASP Sequence:
GTTTGTTTTCTCTTCTGTCTGACCTTCCACAGCAAAATCTGAAGACCCAG[C/T]AAGGGAAAGATAYGGATGTGAGATGTCAAGGTAATTTCTTTAAAGAAGAC
Long Flanking Sequence:
AATAAAGTTAAATGCAAATGTTTATGCTTAGCTATTGGCATACAATTTGCATATCACCTACAGAGCTTTTTATAGGACAGCTATCTACAGGCTTACTCTTTTATGACATTTGGTCTGATGATATTTTGCATGCTTAAACACTGTTTTCTCAGGCTGCTGGAGTGGCCAATGAAGCAAGCGTAAAGACTGAAGAGGAGCTGAAAGAGGAGGTAAACGATGACGATCTGATTCAGATCCAGGAGCACAGACAAATACTGAATGCAGAGAGTGCCACTGAAGCCAAACAGCTGCTCCTCATTCACCAGGTAGAGACTGCACAATTCATTTAGATGACACATATAATGTAATAGACTTGATAAATCTGCTCATCAATTGGATCCGCTAATATGATTGCTGTGAATAAGTGATTTGTTCTGTTATGTGACAATACAAGGGGTGAATCTTAGGATTGTTTGTTTTCTCTTCTGTCTGACCTTCCACAGCAAAATCTGAAGACCCAG[C/T]AAGGGAAAGATATGGATGTGAGATGTCAAGGTAATTTCTTTAAAGAAGACCGGGCAGCTCAAGAGAAACACCTGCAGGTGAGGCTTTTAGCACAATAATGGTATTCATACATTTGACCTGCCGTGTTGTGTGTCAGCTTGTAGTTTGCTTGCTACATGATCCTAGAATTCACTCACTTTCCTTCGACTTAGTCCCTGGTTTATGGATAAATGCCAAATTCCTCCATCAGATATGAGACCTTTTATCAACGTTTACATTTTAAATAAGTGGCAAGAGGAGTGGGATGCAATGGAAAATAATAAATTGTATAAAAACTCAAACTGAATTTTGAGACATTTTAGACTAGATTTGATCAAGTGATTTTTACCAGATGTCGTATTGGACATATAAGATTAGCCCGCGTCTTTTTGCTTAAAGATAAAGACCCCCCTCAATGTTTGTAATGCACAATTCCCCCTTACTGTAAAACACATTTTACTGGACTTTTTTATGAAATGAAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa3056
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000063385 Nonsense 1265 1551 30 35
ENSDART00000135213 Nonsense 1252 1277 28 28
ENSDART00000063385 Nonsense 1265 1551 30 35
ENSDART00000135213 Nonsense 1252 1277 28 28
Genomic Location (Zv9):
Chromosome 20 (position 26243351)
Other Location(s):
Assembly Chromosome Position
GRCz10 20 26314654
GRCz11 20 26213744
KASP Assay ID:
554-2633.1 (used for ordering genotyping assays)
KASP Sequence:
GTTTGTTTTCTCTTCTGTCTGACCTTCCACAGCAAAATCTGAAGACCCAG[C/T]AAGGGAAAGATAYGGATGTGAGATGTCAAGGTAATTTCTTTAAAGAAGAC
Long Flanking Sequence:
AATAAAGTTAAATGCAAATGTTTATGCTTAGCTATTGGCATACAATTTGCATATCACCTACAGAGCTTTTTATAGGACAGCTATCTACAGGCTTACTCTTTTATGACATTTGGTCTGATGATATTTTGCATGCTTAAACACTGTTTTCTCAGGCTGCTGGAGTGGCCAATGAAGCAAGCGTAAAGACTGAAGAGGAGCTGAAAGAGGAGGTAAACGATGACGATCTGATTCAGATCCAGGAGCACAGACAAATACTGAATGCAGAGAGTGCCACTGAAGCCAAACAGCTGCTCCTCATTCACCAGGTAGAGACTGCACAATTCATTTAGATGACACATATAATGTAATAGACTTGATAAATCTGCTCATCAATTGGATCCGCTAATATGATTGCTGTGAATAAGTGATTTGTTCTGTTATGTGACAATACAAGGGGTGAATCTTAGGATTGTTTGTTTTCTCTTCTGTCTGACCTTCCACAGCAAAATCTGAAGACCCAG[C/T]AAGGGAAAGATATGGATGTGAGATGTCAAGGTAATTTCTTTAAAGAAGACCGGGCAGCTCAAGAGAAACACCTGCAGGTGAGGCTTTTAGCACAATAATGGTATTCATACATTTGACCTGCCGTGTTGTGTGTCAGCTTGTAGTTTGCTTGCTACATGATCCTAGAATTCACTCACTTTCCTTCGACTTAGTCCCTGGTTTATGGATAAATGCCAAATTCCTCCATCAGATATGAGACCTTTTATCAACGTTTACATTTTAAATAAGTGGCAAGAGGAGTGGGATGCAATGGAAAATAATAAATTGTATAAAAACTCAAACTGAATTTTGAGACATTTTAGACTAGATTTGATCAAGTGATTTTTACCAGATGTCGTATTGGACATATAAGATTAGCCCGCGTCTTTTTGCTTAAAGATAAAGACCCCCCTCAATGTTTGTAATGCACAATTCCCCCTTACTGTAAAACACATTTTACTGGACTTTTTTATGAAATGAAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa32292
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000063385 Essential Splice Site 1290 1551 None 35
ENSDART00000135213 None 1277 1277 None 28
Genomic Location (Zv9):
Chromosome 20 (position 26243430)
Other Location(s):
Assembly Chromosome Position
GRCz10 20 26314733
GRCz11 20 26213823
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AGGTAATTTCTTTAAAGAAGACCGGGCAGCTCAAGAGAAACACCTGCAGG[T/C]GAGGCTTTTAGCACAATAATGGTATTCATACATTTGACCTGCCGTGTTGT
Long Flanking Sequence:
GCTATCTACAGGCTTACTCTTTTATGACATTTGGTCTGATGATATTTTGCATGCTTAAACACTGTTTTCTCAGGCTGCTGGAGTGGCCAATGAAGCAAGCGTAAAGACTGAAGAGGAGCTGAAAGAGGAGGTAAACGATGACGATCTGATTCAGATCCAGGAGCACAGACAAATACTGAATGCAGAGAGTGCCACTGAAGCCAAACAGCTGCTCCTCATTCACCAGGTAGAGACTGCACAATTCATTTAGATGACACATATAATGTAATAGACTTGATAAATCTGCTCATCAATTGGATCCGCTAATATGATTGCTGTGAATAAGTGATTTGTTCTGTTATGTGACAATACAAGGGGTGAATCTTAGGATTGTTTGTTTTCTCTTCTGTCTGACCTTCCACAGCAAAATCTGAAGACCCAGCAAGGGAAAGATATGGATGTGAGATGTCAAGGTAATTTCTTTAAAGAAGACCGGGCAGCTCAAGAGAAACACCTGCAGG[T/C]GAGGCTTTTAGCACAATAATGGTATTCATACATTTGACCTGCCGTGTTGTGTGTCAGCTTGTAGTTTGCTTGCTACATGATCCTAGAATTCACTCACTTTCCTTCGACTTAGTCCCTGGTTTATGGATAAATGCCAAATTCCTCCATCAGATATGAGACCTTTTATCAACGTTTACATTTTAAATAAGTGGCAAGAGGAGTGGGATGCAATGGAAAATAATAAATTGTATAAAAACTCAAACTGAATTTTGAGACATTTTAGACTAGATTTGATCAAGTGATTTTTACCAGATGTCGTATTGGACATATAAGATTAGCCCGCGTCTTTTTGCTTAAAGATAAAGACCCCCCTCAATGTTTGTAATGCACAATTCCCCCTTACTGTAAAACACATTTTACTGGACTTTTTTATGAAATGAAATCTCTTAAGGACATTTTTAATAAAGTGACACAAGGAAAATGTATAATTTTTATCATGTATTAACTCTAAAAATCTTATT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa37038
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000063385 Essential Splice Site 1337 1551 31 35
ENSDART00000135213 None None 1277 None 28
Genomic Location (Zv9):
Chromosome 20 (position 26246383)
Other Location(s):
Assembly Chromosome Position
GRCz10 20 26317686
GRCz11 20 26216776
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TCATCTTCAGCAGCCTCGACAACCTCAAGTCGGAAAGGAATAATATTCAA[G/A]TAAGAGCACAAACAAATAAAATATACAGTAGTAGCTACATGTTTAATGAA
Long Flanking Sequence:
GGATAAGTTGGCAGTTTATTTGCCGTTGTGGCAACTCTTTATAAAATAAAGGGAATAAGCCGAGGGAAAATGAATGAATGAAAATGAGTTGAAGCAAAAGATTTCTTACATTGTTTTTGGCACAACCTAATTGTTTTTATGTTGAATCCACTTAAATTTGTGAAAAATGATTAAGTTGAATTCCATTTCTGTTGTGACAACATGAAGGAATTGTGTGCAAATCAAGCATTTTTACAGAGTAATGCAACATCAAAAAATGAAAACGAGAACTGCGACTCAGATGACTTGCAGTTGGTGTCGCAATTACAACAATTAGTAGTGAAATGGTTGAATAATGTGTCATTTTAATTGCTCATTAGGTCACTGTGAGCTCGTGGCAGGAGTTTGAAGCAGAGAGAGAAGCCATCTGGCAGTTTATATGCCATGTCAGTCCTGTCCTACAGAGGGAGCTCATCTTCAGCAGCCTCGACAACCTCAAGTCGGAAAGGAATAATATTCAA[G/A]TAAGAGCACAAACAAATAAAATATACAGTAGTAGCTACATGTTTAATGAACTCTGGGCTGAGAGTCTCACTCATATGTGTGTGTGTGTGTGTTTGTTTAGGAGCTTCATGAACAGGGCTACATGTTTGCTGTCCGAGCTGAGTCCCTGGTGAAGAAGGCAGCAGATATTAAACTTGGCCCTCAGAATCAGTCTATGCTACAGGATCAGGCCCAGTCCACGAAAGAAAGGCTGCAGGAGATCCAGGACAGCCTCAGGAAAATGTAAGTCAGATTTTCATTCCTGTGCTTTCAGTTATGCTAGACTGTGATAGTCTGCTGCTCACTGAAGAGTCTGAAGATATTCACAGATTACATGTTGGACTGATGAGTCTACTAGAAATATTTAGCTAATTTAGCTAATATTTCTAGCTAATCTTGAAATATGGCATAAATATGGAGTCAATCCAGGGCCATATATACTTGCAAAATTAAAGGATTTGCAAACAAAAAGTAAGTATTGA
Associated Phenotype:
Not determined