ZMP
hmga1
Ensembl ID:
ZFIN ID:
Description:
high mobility group AT-hook 1 [Source:RefSeq peptide;Acc:NP_998333]
Human Orthologue:
HMGA1
Human Description:
high mobility group AT-hook 1 [Source:HGNC Symbol;Acc:5010]
Mouse Orthologues:
Hmga1, Hmga1-rs1
Mouse Descriptions:
high mobility group AT-hook 1 Gene [Source:MGI Symbol;Acc:MGI:96160]
high mobility group AT-hook I, related sequence 1 Pseudogene [Source:MGI Symbol;Acc:MGI:96161]
high mobility group AT-hook I, related sequence 1 Pseudogene [Source:MGI Symbol;Acc:MGI:96161]
Alleles
There are 2 alleles of this gene:
Allele Name | Consequence | Status | Availability |
---|---|---|---|
sa16984 | Essential Splice Site | Available for shipment | Available now |
sa37600 | Nonsense | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa16984
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000028885 | Essential Splice Site | 61 | 101 | None | 5 |
ENSDART00000131536 | Essential Splice Site | 60 | 100 | None | 5 |
ENSDART00000132205 | Essential Splice Site | 61 | 101 | None | 5 |
ENSDART00000137826 | Essential Splice Site | 61 | 101 | None | 5 |
ENSDART00000139408 | None | None | 45 | None | 2 |
The following transcripts of ENSDARG00000028335 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 23 (position 3770910)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 23 | 3814265 |
GRCz11 | 23 | 3757168 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ACCAAAGGGCAGCAAAAACAAGCCGAGCTCTACTGTGTCTCGGGGCAAAG[T/C]GAGTAGAAGTGTAATWTTGTCGAGGTGCACAAAACCACAGAGACTATTGC
Long Flanking Sequence:
TGCTCTATCTTATTTTCAGAAACATTGTAATTGGCTACTGGCTGAATGCACCTGCTAGCAAGTTTTCTGACAAGTTCTCATTGATGTAAACTTGTCCTGCAGCATCTGAAGTAGATTGTATGCATGGCTCACACCATCAAATTGCAAACTTGTGACAGGAAATCAATTTTACACACGTCCTGAGCATCTAATTCTCCTGGTACTGCAGTGCTAGTTGGGCTGTGGTGATCAACACTATTTGATTCTCTTTTTGGCAACTGATGACCGCGTGCCACCTGTTGGTCTTAAAGTAGCAACCAGTTGCGTTGACTATGATGACCACATGCTTTAAGTTATGCACCAGTGCGCGGTTGAGCCACAGTTTGCTTTCATGCATTTTGAGGTGTATTTGTTTTTGATCTTTCAGCAGGAGGCCAGTGGATCTCCTACACCGAAGAGACCCAGAGGAAGACCAAAGGGCAGCAAAAACAAGCCGAGCTCTACTGTGTCTCGGGGCAAAG[T/C]GAGTAGAAGTGTAATATTGTCGAGGTGCACAAAACCACAGAGACTATTGCGTGCCAAGCTTGCTTGTGCCTTCCGGCCCTTTAAGTTAACCAAAATAGTTACTGTTCATAAATGATGGTTCCTTATTGGCGTATATGCTTTAACGAATCATTTTATTGCACAATATTTTTTTATAATAGGACAAAGATCATTATGAAACGATGAAAGAAATGAACCCTTTAGAGGTTCTGTAGGGAATCTAGGATATTCATCTTTGTGCAGTAGCTTCAACTAATTTTCTGTAAAGTATCTAATATTTGTTATTTTAGTAAAATAACTAAGTAAAACAAACATGCTTGCTTGAATTGATCCTGATCAGAACAGTCTTGTTTTGGCTCGAGTCTGCAGATGCAGTTGCTCAGTTCCGGTTGTTCTCTGACTTCCTGTGGCGTCTGAGCACTGTACATTGCAGGTGCAGAGCAGCGTCTCTGCAGATAAACCCCACCCCCCACTTCCACTCT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa37600
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000028885 | Nonsense | 77 | 101 | 4 | 5 |
ENSDART00000131536 | Nonsense | 76 | 100 | 4 | 5 |
ENSDART00000132205 | Nonsense | 77 | 101 | 4 | 5 |
ENSDART00000137826 | Nonsense | 77 | 101 | 4 | 5 |
ENSDART00000139408 | None | None | 45 | None | 2 |
The following transcripts of ENSDARG00000028335 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 23 (position 3770078)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 23 | 3813433 |
GRCz11 | 23 | 3756336 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TTCAGAAAGCAGCAGCGGCTTCGGCACCTGCAGGGACTAAACGCCGAGGA[C/T]GACCCAAGAAAGCAGTGAGTATTTGTGTGTTGTGCTTTTAAAGGGGCAGT
Long Flanking Sequence:
ATGCTTGCTTGAATTGATCCTGATCAGAACAGTCTTGTTTTGGCTCGAGTCTGCAGATGCAGTTGCTCAGTTCCGGTTGTTCTCTGACTTCCTGTGGCGTCTGAGCACTGTACATTGCAGGTGCAGAGCAGCGTCTCTGCAGATAAACCCCACCCCCCACTTCCACTCTTCCTTCCCCTCCATCTATTGTCATGACGACAGCTGACCCCACCACCCCTCCCCCATTCCCTTTGTGTGCGCGTGTGTGTTCTCGCGTGTTGCCGCTTGTACCAGCTGTCTCTCCGCTCTGGACCAGGTGGTCGGCGAGTTGAAGTGTTGTTCATGTCCGTTTCCAATATAATAGCCAATGAACTCCATGCCCCTGGGCCTCTTGCCAGCTCCAGCCCAGCAGCGCACTCTGCTGGCCATCTGTATTTGCAGCACTGTGTTTATTCTGTCCTTCTCTTGTCTTTCAGAAAGCAGCAGCGGCTTCGGCACCTGCAGGGACTAAACGCCGAGGA[C/T]GACCCAAGAAAGCAGTGAGTATTTGTGTGTTGTGCTTTTAAAGGGGCAGTTCGCTAAAATGCAGTTTTATTCTAGTCTGAATTTCACTTGTACTTCTAGTTTCTTCTGTTGAACACAAGTAATCATTTTGGACAATGTTAAAAATCTGTAACCATTGACTTCCACAGCATTTTCTTCTATGGAAGTCAGTGGTTATCAATATAATCGTTCAACAAAAGTAACTCTAATGTTTAGAACCATTTGAGCATTAATGGTGAGTAAATGTTACATTTTTCCGGTGAACTGTCCCTTTAAAGCTTGTCGAGTGTGGCTTTAGTGAAAACCACATGGCTAAATGAGTGTCTGTGTGGTGAGAAGTTGCCATGGGCGACCACAAAAATATTTGGCTGCTTCTCGAGGGGTTTCTGCAGCTCTCACTCCGCCTCCGTTTCCCCTGCAGCTCATGTTTATAAGCGCAGATCAAATATCTCCAAACCCTTTTATTTTGCTGCTAAGTCAGT
Associated Phenotype:
Not determined