Busch Lab

ZMP

rtdr1

Ensembl ID:
ENSDARG00000017983
ZFIN ID:
ZDB-GENE-081104-375
Description:
Novel protein similar to vertebrate rhabdoid tumor deletion region gene 1 (RTDR1) [Source:UniProtKB/
Human Orthologue:
RTDR1
Human Description:
rhabdoid tumor deletion region gene 1 [Source:HGNC Symbol;Acc:13437]
Mouse Orthologue:
Rtdr1
Mouse Description:
rhabdoid tumor deletion region gene 1 Gene [Source:MGI Symbol;Acc:MGI:1918486]

Alleles

There are 3 alleles of this gene:

Allele Name Consequence Status Availability
sa45336 Nonsense Mutation detected in F1 DNA Not yet available
sa1690 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa45336
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000026831 Nonsense 124 340 4 7
ENSDART00000113945 Nonsense 124 225 4 6
Genomic Location (Zv9):
Chromosome 8 (position 46960558)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 44586525
GRCz11 8 44580431
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GACATTGTGGGCCCCCTTGCAAACCTGTTAGATGACCCTGAGATTGCCTG[T/A]CGTAAAAATGTGCACCGGGCACTTAACAGAATTGCTGAATTTCCCTTGGG
Long Flanking Sequence:
TCACTGATTTCACTGCGATTGAGAGAATGAAAGTACTCCATCTCTCTCTCTCTCACTCTCACTGTGGCCCATTTGACCTGCTGGCGTGACTTTACCTCTCCTCTCGGCTGTTTTACAGCGATACCTGTCTCTAGGAAACATCTGTCTCTGGGAAACATCCACACACACATTCACTCACACACTCATACACTACGGACAATTTCGCCTACCCAATTCACCTGTACCGCATGTCTTTGGACTGTGCAGCTGTAGTTGCCGTCAAACAAAATTATAATAATAATAAATGTATTAATAATAACAATAAAAAGGTTTCTTGAGCTCCAGATCAGTATATTAGAAACCTTTTTGAAGGATATTGTGATGTGTGCAGTCATGGGATTTTTAAATTTTGGTTGTCAGAAATATTCAATGTGTCATATGTGTTTGCACAGGGATGCCTTTTTGAATTTTGACATTGTGGGCCCCCTTGCAAACCTGTTAGATGACCCTGAGATTGCCTG[T/A]CGTAAAAATGTGCACCGGGCACTTAACAGAATTGCTGAATTTCCCTTGGGTAAATATAGTTTTTAATAAAGTACTAAATAAAGTTAAGTTTTAATAAAGTTTTAATAAAGTTAATGAAAAACTTTTGTTTTAAATGGAAACATATATCAGATGCTTCTAATATGAAGAGTTCTCTATTCTACAGGAGCCGTATTTATGGTGAATAAGGGTCTTGTGCCCAGATTGGTTCCCAAGATCTCAATTGAAGAAGAAAACATTCGTGCTTTAGTTCTGTCAACGTTAAGCTGCTGCCTGAGTGTGAATGCCCTGCCGGCACTGGAGAGTGATGTGATTCAGGTCCTAAGAGATCAACTATCTCACTCCTCTCCTATCATTCGCAAGGAGGCTGCATCTGCCTTAATGGCAATCAGGTAGGCAACAACAGTCTAGTTTGGGTTACATTTACTGGGATGATTTGTGTGAACTACATCTGTAATACTGGTGTAACTACTCACATGTAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa1690
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000026831 Nonsense 304 340 7 7
ENSDART00000113945 None None 225 None 6
Genomic Location (Zv9):
Chromosome 8 (position 46973923)
Other Location(s):
Assembly Chromosome Position
GRCz10 8 44573160
GRCz11 8 44567066
KASP Assay ID:
554-1636.1 (used for ordering genotyping assays)
KASP Sequence:
GTGCTAAYGCCCTCCGTGCCCTTACAGTTCTGGCAGAAGTTCCCAGAGCC[C/T]GAGCACATCTGCGGCAGCATGTACCTCTGCTGAAGACCAGACTCACAGAT
Long Flanking Sequence:
ATCTCATCATGAGGTCATAATTCTTACTGACAATAAAATGAAACAAACATTCTTCCCAGAGCCACTATGTTTGTGGCTGTTCATAAATTCAGGTGGCTGTCATCATAATTTCTGATTGAATGCAGAAAGTAGGTTTTCGTGCTGTGCTGTGAGTGATTGGCCCTACAGTGGAAACATGTCTATTGGCCCTGCCCAGCTCAATAAAAACCCCGACTTGCACTGGCCTGACAGTGGAAAAGTGGCAATTCAAATATAAATATTTTTTCTTAAAAAAATAAAAATAAAAATTTACACTACTTTCCTGTTGACCCCTTAGCATCCCCTGTACTGTATATTCCAGGTAATGGCAAAATCTCATTGTCTGTCTGATTCTAGGTAAATCCGAGGCATTGGAAGCAGATGCCTTAGCCCCTCTGCTACAGCTAGTGTTGAGTGAGAATACAGCAGTGTGTGCTAACGCCCTCCGTGCCCTTACAGTTCTGGCAGAAGTTCCCAGAGCC[C/T]GAGCACATCTGCGGCAGCATGTACCTCTGCTGAAGACCAGACTCACAGATCCTAATTACCTCATTCAAGAAGCTGCCTCCACTACCATCGAAGTAATTTCCTGGCAGCCATGAGGAATAAAGAAGTTTGTGCACTAATATAAGCAAGGCCTGGTGTTTTATGTAAAATAAAAGTAAAGATTATCTACATCATTTAAGAACTTGTCATAAATGTAAAGTGAAATTAACGTAATAATAATAATAATGAAGAAATCTAAATGATTTGAAATTTATGTTTGATTAAAATAAGTCTGTTACAGATAAACTGCATTGCAGCTGTTACAAATTAGGTGCTTAAAATAAAGATAAACGTATTGGAAGGCAAACTATGTAATCAATTCTTTTGATGTGGTTTAATCTCTGTGCAGTGTCATGCTACTTGAAATCACTCTGTGTGGCAAATGGACTGGCCAGCAGTCAACGGGGTTCCAAGAATTTCTGTTTGCGAGATTTTCTGTCTGC
Associated Phenotype:
Data not yet available