ZMP
rxrab
Ensembl ID:
ZFIN ID:
Description:
Retinoic acid receptor RXR-alpha-B [Source:UniProtKB/Swiss-Prot;Acc:Q90415]
Human Orthologue:
RXRA
Human Description:
retinoid X receptor, alpha [Source:HGNC Symbol;Acc:10477]
Mouse Orthologue:
Rxra
Mouse Description:
retinoid X receptor alpha Gene [Source:MGI Symbol;Acc:MGI:98214]
Alleles
There are 3 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa16874 | Nonsense | Available for shipment | Available now |
| sa1205 | Nonsense | F2 line generated | Not yet available |
| sa11783 | Essential Splice Site | Available for shipment | Available now |
Mutation Details
Allele Name:
sa16874
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000016321 | Nonsense | 96 | 379 | 3 | 9 |
Genomic Location (Zv9):
Chromosome 5 (position 68079030)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 5 | 63820530 |
| GRCz11 | 5 | 64501694 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
AGGACGGTCAGAAAGGAYCTGACGTACACTTGCAGAGACAACAAGGACTG[T/A]ATGATCGAMAAACGCCAACGCAACCGATGCCAGTACTGCCGCTAWCAGAA
Long Flanking Sequence:
AGCAAGTAATGCAATAACGTCCACACAAGCTACATTTACCGATCGCTTGCCCAACACTGGCGAATTTGATGTGCGAAAGAAGCGAGTAAATTCAAAAATGTTCACGTCTATTTATTCGTGTGTGCCATGTCTGGTGTGAACACAGCATTAGTCACTTCGGACAAAAGTGTCTGCTAAATGACTAAATGTAAATCCCCCAAATGACCAATCAGAATCAGTCATTCCATAGTGTCGTTTCCTTATATTGTATTGCATTCAATAAATTTGGTCTCTCCATATGCTCTGCCTCTCATGTAGTATGGGACAAAAACAGATGTGGTGGCTGCTGAATTATTGATACTGAGCGCCAATTAAATGAAACCCTGCTGGGAAGAGTGCTAAAGCGTGTGTCTGCCGGCAGGTAAACACTACGGGGTGTACAGCTGTGAGGGCTGTAAGGGCTTCTTCAAGAGGACGGTCAGAAAGGACCTGACGTACACTTGCAGAGACAACAAGGACTG[T/A]ATGATCGACAAACGCCAACGCAACCGATGCCAGTACTGCCGCTATCAGAAGTGCTTAGCCATGGGGATGAAGAGAGAAGGTGCGTCCGTTCTTTCTTTCTGCCACATTTAAATAAGAATAAATATGTGGGACAGACAGTGGGACATGCTCTGAAATACACCCATATGAAATACACCCATGCTAAATAGTCATACTTCATTTGGCAAAAAATATTTGAACAAATTGGGTAGATTCCTTGTTAGCAATATTTTCACCTGAAGTTATTGAGTGGTTTATTTTATCTTAAAAGAGTGACTAAGTTTTCTTTAAGTCATCAGAGTAACCTAGTTTGGGCTTGAGTTGTGTTATGGATGAAATATAGGCTAAATTATAAATATTTTTAACACAAAGAACTGACAGATGTAGTTAGAGTTGTATTTTGAAGCTGTAACGTAAATGAAAACACCGGCCAGAAAACTGGAAGCTAAGTGGCACCCTTTCACTTCAGAAAATGTAAGAGC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa1205
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000016321 | Nonsense | 111 | 379 | 3 | 9 |
Genomic Location (Zv9):
Chromosome 5 (position 68078985)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 5 | 63820485 |
| GRCz11 | 5 | 64501649 |
KASP Assay ID:
554-1114.1 (used for ordering genotyping assays)
KASP Sequence:
GACTGTATGATCGACAAACGCCAACGCAACCGATGCCAGTACTGCCGCTA[T/A]CAGAAGTGCTTAGCCATGGGGATGAAGAGAGAAGGTGYGTCCGTTCTTTC
Long Flanking Sequence:
CTTGCCCAACACTGGCGAATTTGATGTGCGAAAGAAGCGAGTAAATTCAAAAATGTTCACGTCTATTTATTCGTGTGTGCCATGTCTGGTGTGAACACAGCATTAGTCACTTCGGACAAAAGTGTCTGCTAAATGACTAAATGTAAATCCCCCAAATGACCAATCAGAATCAGTCATTCCATAGTGTCGTTTCCTTATATTGTATTGCATTCAATAAATTTGGTCTCTCCATATGCTCTGCCTCTCATGTAGTATGGGACAAAAACAGATGTGGTGGCTGCTGAATTATTGATACTGAGCGCCAATTAAATGAAACCCTGCTGGGAAGAGTGCTAAAGCGTGTGTCTGCCGGCAGGTAAACACTACGGGGTGTACAGCTGTGAGGGCTGTAAGGGCTTCTTCAAGAGGACGGTCAGAAAGGACCTGACGTACACTTGCAGAGACAACAAGGACTGTATGATCGACAAACGCCAACGCAACCGATGCCAGTACTGCCGCTA[T/A]CAGAAGTGCTTAGCCATGGGGATGAAGAGAGAAGGTGCGTCCGTTCTTTCTTTCTGCCACATTTAAATAAGAATAAATATGTGGGACAGACAGTGGGACATGCTCTGAAATACACCCATATGAAATACACCCATGCTAAATAGTCATACTTCATTTGGCAAAAAATATTTGAACAAATTGGGTAGATTCCTTGTTAGCAATATTTTCACCTGAAGTTATTGAGTGGTTTATTTTATCTTAAAAGAGTGACTAAGTTTTCTTTAAGTCATCAGAGTAACCTAGTTTGGGCTTGAGTTGTGTTATGGATGAAATATAGGCTAAATTATAAATATTTTTAACACAAAGAACTGACAGATGTAGTTAGAGTTGTATTTTGAAGCTGTAACGTAAATGAAAACACCGGCCAGAAAACTGGAAGCTAAGTGGCACCCTTTCACTTCAGAAAATGTAAGAGCTGAGTGATATGACACAATGCATAAATGTGCATTTAACACATATTC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa11783
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
A > T
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000016321 | Essential Splice Site | 331 | 379 | 9 | 9 |
Genomic Location (Zv9):
Chromosome 5 (position 68054132)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 5 | 63795632 |
| GRCz11 | 5 | 64476796 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TTATCAGTGTTGTTTTGCCTAATATTCTCTGTAATATTTAAAAWTCGYGC[A/T]GRTTTGCCAAGCTGCTGCTGCGTCTGCCCGCCCTGCGCTCCATCGGCCTC
Long Flanking Sequence:
TCATCCCACGTGATTATGTACACTTCGTTCTTTCACTGGATGATTACAGCCTACTGAGACTACAAATAGGCGCAGAAGGCCCCTACTGGCCCATATCTGCCACTGATAACGCCCAATCAATTGAATGATTACATTGGAATCTGGTGCTAATTTAGTGATTTTAATTTTTAAGAAACTTACAGATTTACAGTTGAAGGGAGATTTATCAAGGTACTAATAATATTATCCTTAAAATAGTTTTAAAACTGTTTTTATTTTAGCCAAAATAAAACAAATCAGACTTTCTCCAGAAGAAAAAATATTATAGGAAATACTGTGTAAAATTTCCTTGCTCTCTTAAACATCATTGGGGAAATATTTCTAATAATAGAGAGCTAATAATTATGACTTCCACTGTATGTTTATGTTTTTTAACATTCTATAAGTATATTAACATTACATTCATGTTTATTATCAGTGTTGTTTTGCCTAATATTCTCTGTAATATTTAAAAATCGCGC[A/T]GGTTTGCCAAGCTGCTGCTGCGTCTGCCCGCCCTGCGCTCCATCGGCCTCAAGTGTCTGGAGCATCTCTTTTTCTTCAAGTTAATTGGAGACACGCCGATCGACACTTTCCTCATGGAGATGCTGGAGGCGCCGCATCAAATCACATAAACTCCTCATGTACGAAACACACGGCAGGAACATTACGCAATGCGCTAAATACTGTCCAACCCATTCATTACGGAATACCATGCCGGATTAAGTGAGTTTTTCCTGGTTTGCATGCACGTTTGGGAAGTCTCGCAACGTTCTGGAGTTTTTTTTTTTATTTCTTTTGCCTTACAGAGGTCTACCTCTGCTTTCCACAGCCGAACCGCCTCATCTCTGAACTCACAATCATTTTGCTGTGAATGAGAGGACACAAAATACCTCAGATGCACTTCTACATGCAGCTGTCCTTAAAGCGCGCCACTGTGTTGATTTCAGTGGGTACGTTTACATGGTCATGAGTCATCCAATTAT
Associated Phenotype:
Not determined