ZMP
si:ch211-260g14.3
Ensembl ID:
ZFIN ID:
Description:
hypothetical protein LOC558036 [Source:RefSeq peptide;Acc:NP_001020669]
Human Orthologue:
LMX1A
Human Description:
LIM homeobox transcription factor 1, alpha [Source:HGNC Symbol;Acc:6653]
Mouse Orthologue:
Lmx1a
Mouse Description:
LIM homeobox transcription factor 1 alpha Gene [Source:MGI Symbol;Acc:MGI:1888519]
Alleles
There are 4 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa9422 | Essential Splice Site | Available for shipment | Available now |
| sa32304 | Nonsense | Available for shipment | Available now |
| sa37086 | Nonsense | Mutation detected in F1 DNA | Not yet available |
| sa1653 | Essential Splice Site | F2 line generated | Not yet available |
Mutation Details
Allele Name:
sa9422
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
G > T
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000019059 | Essential Splice Site | 214 | 366 | 4 | 7 |
| ENSDART00000139609 | Essential Splice Site | 116 | 147 | 4 | 5 |
| ENSDART00000146292 | Essential Splice Site | 116 | 118 | 4 | 4 |
Genomic Location (Zv9):
Chromosome 20 (position 33961261)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 20 | 34033774 |
| GRCz11 | 20 | 33936653 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ACCATGAAGGTCAGCCTGTGGCTCAGTCTCTGTCTGTTTGTCTATTGTAA[G/T]GTGAGGGAGACTCTGGCAGCAGAGACAGGACTGAGCGTACGAGTCGTTCA
Long Flanking Sequence:
AATACTTAGACCCGCCTGTCTGGTACCAACAACTATGCCACATTCAAAGTCACTTAAATCACCTTTTTTCCCCATTCTAATGCTCGGTTTGAACTGCAGCAGATCATCTTGACCATGTCTACATGCCTAAAGGCATTGAGCTGCTGCCATGTGATTGGCTGATTAGAAATTTGTGTTAATGAGCAGTATGTGTATATATATATATATACATATATATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGATGTGTTATATATACATTTATATGCATGTCTTTTGTAAATTTGTGAAGGAAGTTTTTGTGCAGCTGCAGCTGGTCTGAACTGTATCTGTTGTTGATCTGATACTCCAGTGCGGGTCAGTTCATCAGTTAGCCTACATGACCCACAGACCATGAAGGTCAGCCTGTGGCTCAGTCTCTGTCTGTTTGTCTATTGTAA[G/T]GTGAGGGAGACTCTGGCAGCAGAGACAGGACTGAGCGTACGAGTCGTTCAGGTCTGGTTCCAGAACCAAAGAGCCAAGGTAACGTGATGCCCGCCGACACAGACAAACACACTCATTGAAAGAACATCAACTTATGCAATTGATAACAGACCTCTTTCTGCAGCACACCAGCTTGCCAATCAGGAAACAAGCTGTGTTATTGCCTCACGTAGGAAACCGATGACATATTATGTATAGATAACCTTAGATTAGACTTGGATTTCCTTTCAGGGTTAGCGCTGTGTGTTTTCAGCCTTCCTCTGCATTTTTTAAGGATATTTTCTCTTATTACTTACAGTGTTATGCAAACGTCATGCAAAAATGTGAAAAATGTACACAAAATAAGTGGTTTTTTATCAGTTACACTCCTGAGTAAGATAGATACACAATTATTTTTATTGTTTGCAACTCTGCAGTATTCACAATTGCAGTTAAAGATACAGAAAAACAGAACAGTGATA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa32304
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000019059 | Nonsense | 227 | 366 | 4 | 7 |
| ENSDART00000139609 | Nonsense | 129 | 147 | 4 | 5 |
| ENSDART00000146292 | None | None | 118 | None | 4 |
Genomic Location (Zv9):
Chromosome 20 (position 33961301)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 20 | 34033814 |
| GRCz11 | 20 | 33936693 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TCTATTGTAAGGTGAGGGAGACTCTGGCAGCAGAGACAGGACTGAGCGTA[C/T]GAGTCGTTCAGGTCTGGTTCCAGAACCAAAGAGCCAAGGTAACGTGATGC
Long Flanking Sequence:
CATTCAAAGTCACTTAAATCACCTTTTTTCCCCATTCTAATGCTCGGTTTGAACTGCAGCAGATCATCTTGACCATGTCTACATGCCTAAAGGCATTGAGCTGCTGCCATGTGATTGGCTGATTAGAAATTTGTGTTAATGAGCAGTATGTGTATATATATATATATACATATATATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGATGTGTTATATATACATTTATATGCATGTCTTTTGTAAATTTGTGAAGGAAGTTTTTGTGCAGCTGCAGCTGGTCTGAACTGTATCTGTTGTTGATCTGATACTCCAGTGCGGGTCAGTTCATCAGTTAGCCTACATGACCCACAGACCATGAAGGTCAGCCTGTGGCTCAGTCTCTGTCTGTTTGTCTATTGTAAGGTGAGGGAGACTCTGGCAGCAGAGACAGGACTGAGCGTA[C/T]GAGTCGTTCAGGTCTGGTTCCAGAACCAAAGAGCCAAGGTAACGTGATGCCCGCCGACACAGACAAACACACTCATTGAAAGAACATCAACTTATGCAATTGATAACAGACCTCTTTCTGCAGCACACCAGCTTGCCAATCAGGAAACAAGCTGTGTTATTGCCTCACGTAGGAAACCGATGACATATTATGTATAGATAACCTTAGATTAGACTTGGATTTCCTTTCAGGGTTAGCGCTGTGTGTTTTCAGCCTTCCTCTGCATTTTTTAAGGATATTTTCTCTTATTACTTACAGTGTTATGCAAACGTCATGCAAAAATGTGAAAAATGTACACAAAATAAGTGGTTTTTTATCAGTTACACTCCTGAGTAAGATAGATACACAATTATTTTTATTGTTTGCAACTCTGCAGTATTCACAATTGCAGTTAAAGATACAGAAAAACAGAACAGTGATAAAATAATTTATGACATGTATGTGAACGGGCAGACTTGACT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa37086
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000019059 | Nonsense | 232 | 366 | 4 | 7 |
| ENSDART00000139609 | Nonsense | 134 | 147 | 4 | 5 |
| ENSDART00000146292 | None | None | 118 | None | 4 |
Genomic Location (Zv9):
Chromosome 20 (position 33961318)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 20 | 34033831 |
| GRCz11 | 20 | 33936710 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GAGACTCTGGCAGCAGAGACAGGACTGAGCGTACGAGTCGTTCAGGTCTG[G/A]TTCCAGAACCAAAGAGCCAAGGTAACGTGATGCCCGCCGACACAGACAAA
Long Flanking Sequence:
ATCACCTTTTTTCCCCATTCTAATGCTCGGTTTGAACTGCAGCAGATCATCTTGACCATGTCTACATGCCTAAAGGCATTGAGCTGCTGCCATGTGATTGGCTGATTAGAAATTTGTGTTAATGAGCAGTATGTGTATATATATATATATACATATATATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGATGTGTTATATATACATTTATATGCATGTCTTTTGTAAATTTGTGAAGGAAGTTTTTGTGCAGCTGCAGCTGGTCTGAACTGTATCTGTTGTTGATCTGATACTCCAGTGCGGGTCAGTTCATCAGTTAGCCTACATGACCCACAGACCATGAAGGTCAGCCTGTGGCTCAGTCTCTGTCTGTTTGTCTATTGTAAGGTGAGGGAGACTCTGGCAGCAGAGACAGGACTGAGCGTACGAGTCGTTCAGGTCTG[G/A]TTCCAGAACCAAAGAGCCAAGGTAACGTGATGCCCGCCGACACAGACAAACACACTCATTGAAAGAACATCAACTTATGCAATTGATAACAGACCTCTTTCTGCAGCACACCAGCTTGCCAATCAGGAAACAAGCTGTGTTATTGCCTCACGTAGGAAACCGATGACATATTATGTATAGATAACCTTAGATTAGACTTGGATTTCCTTTCAGGGTTAGCGCTGTGTGTTTTCAGCCTTCCTCTGCATTTTTTAAGGATATTTTCTCTTATTACTTACAGTGTTATGCAAACGTCATGCAAAAATGTGAAAAATGTACACAAAATAAGTGGTTTTTTATCAGTTACACTCCTGAGTAAGATAGATACACAATTATTTTTATTGTTTGCAACTCTGCAGTATTCACAATTGCAGTTAAAGATACAGAAAAACAGAACAGTGATAAAATAATTTATGACATGTATGTGAACGGGCAGACTTGACTCAAAAACTTACACTAAA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa1653
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000019059 | Essential Splice Site | 321 | 366 | 6 | 7 |
| ENSDART00000139609 | None | None | 147 | None | 5 |
| ENSDART00000146292 | None | None | 118 | None | 4 |
Genomic Location (Zv9):
Chromosome 20 (position 33964377)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 20 | 34036890 |
| GRCz11 | 20 | 33939769 |
KASP Assay ID:
554-1593.1 (used for ordering genotyping assays)
KASP Sequence:
ACAGGGCCTGACCCCTCCTCAGATGCCCGGAGACCACATGCATCCCTATG[G/A]TATTAAATAACACATTATAGACTCACAGCAATGCTGTGCTGGAAATAGGC
Long Flanking Sequence:
TACATCAAAAAGTGTGGTTGAGGACCATCCAACAAGCTAATCCAGCAAAAAATGTGCTTAAAGTATCGAAACCTCATAATTAAATGGAAAATGTGGCTAATAACTGCAAAAGGTCCATATTTTAAAAGAAAATAACCTCCCCTCTTACCAGACTGGTTACGGGCCTAAACAGTTGTATAAATTAAAATCCTGTACAACTTAAAGTCATCACTAACAGTCAATCTCGAAATTATTCCTACCCCATAATTAACTATTCAAAATTTCGGGCTTGACGATATAGACATTATATACAAGTAAAGCTGCTGCATCAAGTCATTTTGTTGTCTTTTGTATGCCCACAGCGACCTCTTGTGGAGCTCTGCCTGTTGAGCTGGAATGTGCAGGTTCATATCCACTTCCCCAGCAGAATCTCAGTCTAGACTCACAGAGCTTGAAGCTGGACCCCTTCAGACAGGGCCTGACCCCTCCTCAGATGCCCGGAGACCACATGCATCCCTATG[G/A]TATTAAATAACACATTATAGACTCACAGCAATGCTGTGCTGGAAATAGGCATTTAAAAAAGTATCATTTGTCTCTTTACAGGTTGTGATACACTCTATGATGAAACAGACAGTGACCCTCTGTGTCATTTTGGAGACTGTATGTCGTCCAGTGAACTTTCCTTTTTAACACCCATTGACCGATTGTATTCAATGCAAGATTCGTATTTCGCCTCTTGAGCATCATTCTGACGGCTCATTAAAGATTTATGAAGGAGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGGTGAATGTATACGCGTGCTTGTATATGTTCTGCTTATGCATGTTTTAGTGTAGAAATGGTTGTGATTGGCGACAAAGGAAATGTACCGTGATAAATATTATTTGTTTAATTTGTATTTATTATTTTTATGTGTGTAATCTTGACTGAATTACAATAAAATGCTCATGACGTGTTTTTGT
Associated Phenotype:
Not determined