Busch Lab

ZMP

lrrtm1

Ensembl ID:
ENSDARG00000052713
ZFIN ID:
ZDB-GENE-050506-80
Description:
Leucine rich repeat transmembrane neuronal 1 [Source:UniProtKB/TrEMBL;Acc:B8JKM0]
Human Orthologue:
LRRTM1
Human Description:
leucine rich repeat transmembrane neuronal 1 [Source:HGNC Symbol;Acc:19408]
Mouse Orthologue:
Lrrtm1
Mouse Description:
leucine rich repeat transmembrane neuronal 1 Gene [Source:MGI Symbol;Acc:MGI:2389173]

Alleles

There are 3 alleles of this gene:

Allele Name Consequence Status Availability
sa15349 Nonsense Available for shipment Available now
sa16451 Nonsense Available for shipment Available now
sa12867 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa15349
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
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Mutation:
T > G
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000074618 Nonsense 146 522 1 1
ENSDART00000133917 Nonsense 148 524 1 1
ENSDART00000074618 Nonsense 146 522 1 1
ENSDART00000133917 Nonsense 148 524 1 1
Genomic Location (Zv9):
Chromosome 1 (position 43160593)
Other Location(s):
Assembly Chromosome Position
GRCz10 1 42076909
GRCz11 1 42778073
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
AACGGGACCTTYAGRCCTCTGCCCAATCTGCGAATAYTGGATTTATCCTA[T/G]AACAGACTTCAGTCCTTGGAGCCAGACCTTTTCCATGGCCTTAGGAAGCT
Long Flanking Sequence:
ATGACCAAGGTTTGAAAGATTCAATGGACTTTTTCTCTTTAACACTGCAGGATATTCATGCTAATGGATTTCCTTCTAATTGGTCTGTACCTAAAGTGGCCGCTAAGGAAGCCCCCTGGGCTGATACTGTGCTCCCTGGGCATTGTTCTGAAAATAGTTCCTTTGGTGGGGGGGAGCTGTCCGAGGCTGTGCCGATGCGACAACAAGCAGTTGTATTGTGAGGGACTCAACCTGACAGATATCCCCCAAAACCTGAGCAGCGCCATTGGTTTGTCCCTACGTGAGAATAACATCTCTGAGCTGCGGGAAGGGAACTTTGTGGGCCTGTCACAGCTTACCTGGCTCTACTTGGATCATAACAATATTGAGATTGTCGAGGAGAGTGCTTTTGAGAGGCTGCGAAGGATTAAAGAGCTGGATCTGAGCACCAACCGTATAGAAAGTCTGCCCAACGGGACCTTTAGACCTCTGCCCAATCTGCGAATACTGGATTTATCCTA[T/G]AACAGACTTCAGTCCTTGGAGCCAGACCTTTTCCATGGCCTTAGGAAGCTTACCAATTTACATTTGCGCTACAATGCCCTTAAATTCATCCCTGTGCGGATTTTCCAGGATTGCAGGAGCATGCAATTCCTGGATCTGGGTTACAACCAGCTGCAGAGCCTGGCACGTAATTCATTTGCCGGACTCTTTAAGCTTACTGAGCTGCATCTGGAGCACAATGAGTTGGTGAAAGTCAACCTAGCCCATTTCCCCCGCCTCATATCCCTGCGGACTCTCTACATGAGAAACAATAAGGCCACCATAGTGGTCAACACCCTTGAGTGGACCTGGGACTACTTGGAGAAGATTGACTTCTCCAACAATGAGATCGAGTACATCGAGCCACATGTGTTTGAGAGCGTGCCCAAACTGAACACTCTCATGCTGGACTCTAATAAACTGACTTACATAGATCAACGGATTTTGGACTCATGGACATCACTGAGCAGCATCACACTGTC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa16451
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000074618 Nonsense 146 522 1 1
ENSDART00000133917 Nonsense 148 524 1 1
ENSDART00000074618 Nonsense 146 522 1 1
ENSDART00000133917 Nonsense 148 524 1 1
Genomic Location (Zv9):
Chromosome 1 (position 43160593)
Other Location(s):
Assembly Chromosome Position
GRCz10 1 42076909
GRCz11 1 42778073
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
AACGGGACCTTYAGRCCTCTGCCCAATCTGCGAATAYTGGATTTATCCTA[T/A]AACAGACTTCAGTCCTTGGAGCCAGACCTTTTCCATGGCCTTAGGAAGCT
Long Flanking Sequence:
ATGACCAAGGTTTGAAAGATTCAATGGACTTTTTCTCTTTAACACTGCAGGATATTCATGCTAATGGATTTCCTTCTAATTGGTCTGTACCTAAAGTGGCCGCTAAGGAAGCCCCCTGGGCTGATACTGTGCTCCCTGGGCATTGTTCTGAAAATAGTTCCTTTGGTGGGGGGGAGCTGTCCGAGGCTGTGCCGATGCGACAACAAGCAGTTGTATTGTGAGGGACTCAACCTGACAGATATCCCCCAAAACCTGAGCAGCGCCATTGGTTTGTCCCTACGTGAGAATAACATCTCTGAGCTGCGGGAAGGGAACTTTGTGGGCCTGTCACAGCTTACCTGGCTCTACTTGGATCATAACAATATTGAGATTGTCGAGGAGAGTGCTTTTGAGAGGCTGCGAAGGATTAAAGAGCTGGATCTGAGCACCAACCGTATAGAAAGTCTGCCCAACGGGACCTTTAGACCTCTGCCCAATCTGCGAATACTGGATTTATCCTA[T/A]AACAGACTTCAGTCCTTGGAGCCAGACCTTTTCCATGGCCTTAGGAAGCTTACCAATTTACATTTGCGCTACAATGCCCTTAAATTCATCCCTGTGCGGATTTTCCAGGATTGCAGGAGCATGCAATTCCTGGATCTGGGTTACAACCAGCTGCAGAGCCTGGCACGTAATTCATTTGCCGGACTCTTTAAGCTTACTGAGCTGCATCTGGAGCACAATGAGTTGGTGAAAGTCAACCTAGCCCATTTCCCCCGCCTCATATCCCTGCGGACTCTCTACATGAGAAACAATAAGGCCACCATAGTGGTCAACACCCTTGAGTGGACCTGGGACTACTTGGAGAAGATTGACTTCTCCAACAATGAGATCGAGTACATCGAGCCACATGTGTTTGAGAGCGTGCCCAAACTGAACACTCTCATGCTGGACTCTAATAAACTGACTTACATAGATCAACGGATTTTGGACTCATGGACATCACTGAGCAGCATCACACTGTC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa12867
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000074618 Nonsense 395 522 1 1
ENSDART00000133917 Nonsense 397 524 1 1
Genomic Location (Zv9):
Chromosome 1 (position 43159846)
Other Location(s):
Assembly Chromosome Position
GRCz10 1 42076162
GRCz11 1 42777326
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ARAAACCGACCCAGAGGCTTCATATATGAGGGCCCAMYAAAAAATCCCTA[C/A]GACCYRCAGGATATGGAGGGTGGGGAAGTGGTGACCAACTCCTTAACAGT
Long Flanking Sequence:
TTCCCCCGCCTCATATCCCTGCGGACTCTCTACATGAGAAACAATAAGGCCACCATAGTGGTCAACACCCTTGAGTGGACCTGGGACTACTTGGAGAAGATTGACTTCTCCAACAATGAGATCGAGTACATCGAGCCACATGTGTTTGAGAGCGTGCCCAAACTGAACACTCTCATGCTGGACTCTAATAAACTGACTTACATAGATCAACGGATTTTGGACTCATGGACATCACTGAGCAGCATCACACTGTCAGGGAATGACTGGGAATGCAGCAGGAATGTCTGTGCCTTGGCTTCCTGGCTTAGCAATTTCCAGGGACAACGTGACAGTGGCCTGTTGTGTGCCAACCCGGACATTGCACAGGGTGAGGACATTCTGGATGCTGTCTATGCTTTTCAGTTATGCGAGGACAATGTGGAAGCAACCACACAGACCTTCACTGTCACCAGAAACCGACCCAGAGGCTTCATATATGAGGGCCCAACAAAAAATCCCTA[C/A]GACCTACAGGATATGGAGGGTGGGGAAGTGGTGACCAACTCCTTAACAGTGACCGCTTCTGCTGATGACCTGGAGAGCACCATGAAGATCCACAAAGTGGTGACAGGAACCATGGCCCTCATTTTCTCCTTTCTGATCATGGTCCTCATGCTCTATGTGTCGTGGAAATGTTTCCCAGCGGGTGTCAGGCAGTTGAGGCAGTGCTTCACCAGCCAGCGTCGCAAGCAGAAGCAGAAGCAGACCATGCAGCAGATGGCTACTACGTCTGCATCCGAGTACTACGTTGACTACAAACCCAACCATATTGATGGGGGACTTGTCATCATCAATGAGTATGGTTCTTGCAAGTGCCAGCAACAGGCATCTCGAGAGTGCGAAGTGTGATATTCCACCCATGTCAGTTTTTACAAATCAATGTATGGGTGGATATGGAACATACGTTAACTTGGCACCCAATTTTGCTGCTCTCAAAAGGAGCTACAGTTCTGGAGTGTGAGTGG
Associated Phenotype:
Not determined