Busch Lab

ZMP

pcdh2g9

Ensembl ID:
ENSDARG00000074738
ZFIN ID:
ZDB-GENE-050610-31
Description:
protocadherin 2 gamma 9 [Source:RefSeq peptide;Acc:NP_001019353]
Human Orthologues:
PCDHB1, PCDHG@, PCDHGA1, PCDHGA10, PCDHGA11, PCDHGA12, PCDHGA3, PCDHGA5, PCDHGA6, PCDHGA7, PCDHGA8
Human Descriptions:
protocadherin beta 1 [Source:HGNC Symbol;Acc:8680]
protocadherin gamma cluster [Source:HGNC Symbol;Acc:8695]
protocadherin gamma subfamily A, 1 [Source:HGNC Symbol;Acc:8696]
protocadherin gamma subfamily A, 10 [Source:HGNC Symbol;Acc:8697]
protocadherin gamma subfamily A, 11 [Source:HGNC Symbol;Acc:8698]
protocadherin gamma subfamily A, 12 [Source:HGNC Symbol;Acc:8699]
protocadherin gamma subfamily A, 3 [Source:HGNC Symbol;Acc:8701]
protocadherin gamma subfamily A, 5 [Source:HGNC Symbol;Acc:8703]
protocadherin gamma subfamily A, 6 [Source:HGNC Symbol;Acc:8704]
protocadherin gamma subfamily A, 7 [Source:HGNC Symbol;Acc:8705]
protocadherin gamma subfamily A, 8 [Source:HGNC Symbol;Acc:8706]
Mouse Orthologue:
Pcdhb1
Mouse Description:
protocadherin beta 1 Gene [Source:MGI Symbol;Acc:MGI:2136730]

Alleles

There are 2 alleles of this gene:

Allele Name Consequence Status Availability
sa11089 Nonsense Available for shipment Available now
sa16312 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa11089
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000112795 Nonsense 84 815 1 1
Genomic Location (Zv9):
Chromosome 14 (position 2898267)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 2135638
GRCz11 14 2053989
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ACAGATTGTCATCTCGTAAGGCTCGTATTGATACTGAAGGTAATCGGAAA[C/T]AATACTGCGACATTAATCTGAGAACAGGAGAATTRATAGTGRCCGATAGG
Long Flanking Sequence:
TTGTAGCTATCATCTTGTTTCTAAACACATTGCATTTGTAAGTGCATGCTACATATACTCCTTTAAATGAATCCATGCAGTTTTGTTCTGTTAACTCATGGCGTCGCTATTTACCTGCAAAACAATCAGTGTCTTCATCACACATCTCTCCACCCTGCTATTGATGTCATGCGCAGAGCTGCAAAGTAGACTCGTCGTTTTCTTAAATATCGTCGACAACGACAGCTTTCCTAAACCTGGATTTTGTTTAAATGCTATTACTGTATTACTGGGATAAGTTTCTGATGGATTTATCAAGATTGTCAAAGATTTGTTCTATAATGGTTGGTCTTTTGTTCTTCGTGCTGATGGCGCACAGCGCTTATGGAGACGTGAGCTATTCTTTCCCGGAGGAGATGAAACGCGGATCTGTGATTGGAAATATAGCGAAGGATCTCGGGCTGGATGTGAACAGATTGTCATCTCGTAAGGCTCGTATTGATACTGAAGGTAATCGGAAA[C/T]AATACTGCGACATTAATCTGAGAACAGGAGAATTAATAGTGGCCGATAGGATAGATAGAGAGGGGCTTTGTAAGGAGCGGCTTTCTTGCACACTTACATTTGAGCTAATATTAGAAAATCCTTTGGAATCGCATCGTGTACAATTACAAATCCAAGACATCAACGATAATTCCCCAATATTTCATAAAGATGAAATCAAGTATGAAATACGTGAAAGTGCCGATAAAGGTGCTCGTTTTCGTGTCATTGAGGCTCGTGATGCGGATGTTGGCCACAATTCAGTGCAAAAATATACATTAGAGAGAAATCCGAATTTTATTTTAGCCGTGAATTCAAGGACAGATGGAAGTAGGTTTGTTGAGCTGGTTTTGGATAAAGAATTAGATCGAGAGCAACAAAAGGATGTGAGATTAATTCTGACTGCGGTAGACGGCGGGACTCCACCGAGATCAGGTACTGTAGCCATACACGTCACTGTGCTGGATGCTAATGATAATGCT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa16312
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000112795 Nonsense 191 815 1 1
Genomic Location (Zv9):
Chromosome 14 (position 2898589)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 2135316
GRCz11 14 2053667
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CCACAATTCAGTGCAAMAATATWCATTAGARAGAAATCCGAATTTTATTT[T/A]AGCCGTGAATTCAAGGACAGATGGAAGTAGGTTTGTTGAGNCTGGTKTTGG
Long Flanking Sequence:
GGTTGGTCTTTTGTTCTTCGTGCTGATGGCGCACAGCGCTTATGGAGACGTGAGCTATTCTTTCCCGGAGGAGATGAAACGCGGATCTGTGATTGGAAATATAGCGAAGGATCTCGGGCTGGATGTGAACAGATTGTCATCTCGTAAGGCTCGTATTGATACTGAAGGTAATCGGAAACAATACTGCGACATTAATCTGAGAACAGGAGAATTAATAGTGGCCGATAGGATAGATAGAGAGGGGCTTTGTAAGGAGCGGCTTTCTTGCACACTTACATTTGAGCTAATATTAGAAAATCCTTTGGAATCGCATCGTGTACAATTACAAATCCAAGACATCAACGATAATTCCCCAATATTTCATAAAGATGAAATCAAGTATGAAATACGTGAAAGTGCCGATAAAGGTGCTCGTTTTCGTGTCATTGAGGCTCGTGATGCGGATGTTGGCCACAATTCAGTGCAAAAATATACATTAGAGAGAAATCCGAATTTTATTT[T/A]AGCCGTGAATTCAAGGACAGATGGAAGTAGGTTTGTTGAGCTGGTTTTGGATAAAGAATTAGATCGAGAGCAACAAAAGGATGTGAGATTAATTCTGACTGCGGTAGACGGCGGGACTCCACCGAGATCAGGTACTGTAGCCATACACGTCACTGTGCTGGATGCTAATGATAATGCTCCAGTCTTTAGTCAGGCCGTCTATAAAGTCAGTCTGCCTGAAAATTCCCCTGTAGATACTGTAGTGGTGACAGTGAGCGCTACTGATGCTGACGAGGGGCAAAATGGAGAAGTGACGTATGAGTTTGGACATTTATCTGATTCTGCAAGAGAAGCTTTTTCACTGGATCATCAGACTGGTCAAATTGTTGTAAAAGGGCGAATCGATTTTGAAGATGAATCAAGATATGAAATTATTGTTGAGGCTAAGGACGAGTATGGTCTTTCATCAGACACAAAAGTCGTAATCGAAATTACTGACGTCAATGACAATGCGCCAATTA
Associated Phenotype:
Not determined