Busch Lab

ZMP

matn4

Ensembl ID:
ENSDARG00000015947
ZFIN ID:
ZDB-GENE-050208-64
Description:
matrilin-2 [Source:RefSeq peptide;Acc:NP_998714]
Human Orthologue:
MATN4
Human Description:
matrilin 4 [Source:HGNC Symbol;Acc:6910]
Mouse Orthologue:
Matn4
Mouse Description:
matrilin 4 Gene [Source:MGI Symbol;Acc:MGI:1328314]

Alleles

There are 5 alleles of this gene:

Allele Name Consequence Status Availability
sa18675 Essential Splice Site Available for shipment Available now
sa15898 Nonsense Available for shipment Available now
sa40795 Nonsense Mutation detected in F1 DNA Not yet available
sa40796 Nonsense Mutation detected in F1 DNA Not yet available

Mutation Details

Allele Name:
sa18675
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
A > G
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000002571 None None 698 None 13
ENSDART00000065681 Essential Splice Site 541 944 11 18
ENSDART00000065682 None None 821 None 16
ENSDART00000065683 None None 637 None 14
ENSDART00000077761 None None 657 None 12
ENSDART00000077763 Essential Splice Site 336 561 7 14
ENSDART00000103118 None None 441 None 11
Genomic Location (Zv9):
Chromosome 6 (position 52777937)
Other Location(s):
Assembly Chromosome Position
GRCz10 6 52826942
GRCz11 6 52825271
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TTTCCAACAACTTTGGCCACTAAACKTCTCTGCTTCTCTCTGCCCGWTCC[A/G]GTGATCGACTACTGTTCAKTCGGGAATGAKAGCTGCGAGCACCAGTGTGT
Long Flanking Sequence:
TTTGATAAGTTCAGTTATGTTCATGCTATAAATAACTGAGGGAAAAAATAGGATATTTGTGTAAAAGAGTAATCTGTTTGGTCATGTCCTTAATTTCATTTTACTCATCTAATCTACTGTAGTGATCGACTACTGCTCGTTTGGGAATGATAGCTGCGAGCACGAGTGTGTGAGTGTGCTCAAAGGCTTTCACTGCATTTGTAACGATGGATACTCGCTCAACGATGACAAGAAGACCTGTACAAGTTAGTGAAAGCCACACACACATACTCCTAAATCGACCCACAGACTGTATCCATAACCCCAGATTGATAAGCCAAAAACTTTTATCATTGTTTTTGAATCCATTATCCACTCCAAATTCATAAAACAGTCACATCTCAGATGAGAAATAAACATAATAGCACGTTTCCTTTCTGTGCTTCTTCCACCTACAAAACATTAAGCTTTTTTCCAACAACTTTGGCCACTAAACTTCTCTGCTTCTCTCTGCCCGTTCC[A/G]GTGATCGACTACTGTTCATTCGGGAATGATAGCTGCGAGCACCAGTGTGTTAGTGTGCTCAAAGGCTTTAACTGCCGCTGTAATGAAGGATACTCGCTCAATGGCGACCTCAAGACCTGCACAAGTTAGTGAGGGCGACACATTGAACTACACACACAGACATATTATGGACAAGTTGCTTTTGGTAGCTCTTATGGAAGCCCATTTACACTTCAGAGTAAAACATACACTGGTTTCTCTTTATATTAAGTAATCCTAACAACTATGTACTTCATCAGAAAATAAGTATGATGTACATATACTGTAAAAAGCGATTAGTTGACTTTACTTAAGAAAAGAGAGTTAAATCATTGTCTTAAAATTATGAAGTAAACAAACTGTGCATAATTAGAAAAGTTAAGTCAATGGGTTTAATGACCTTTTTAAGTGAAATCCACTTGTGGCTTTTATGACAATGTGTTTACTTCTTTTTTTTAAAGTAACTAATCGCTTTTTACAGT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa15898
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000002571 None None 698 None 13
ENSDART00000065681 Nonsense 612 944 12 18
ENSDART00000065682 Nonsense 489 821 10 16
ENSDART00000065683 Nonsense 407 637 8 14
ENSDART00000077761 None None 657 None 12
ENSDART00000077763 Nonsense 407 561 8 14
ENSDART00000103118 None None 441 None 11
Genomic Location (Zv9):
Chromosome 6 (position 52779768)
Other Location(s):
Assembly Chromosome Position
GRCz10 6 52828773
GRCz11 6 52827102
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GAGTGTGTGAGTGTCCTCAATGGTTTTCACTGCCGTTGTAAGGACGGATA[C/A]ACCCTCAATGAGGACAAGAAGACCTGTACAAGTTAGTGAGARTAACTNGTT
Long Flanking Sequence:
AACTGATAGAAATAGTCCATAATTTATCAGATTTAATATCAGATTAATACCGATAATTAAAAGAATAAGTATTTATTAGCCGATACCAATATGTTGGCTGATATATTGTGCACAAAAGTCACAAGTGCATGTTTTATGAGGTGGAAATCGGCTTCTATAGGTTTTGCTGGTGAACAGCAGGGTCAGACCTCATCTCAAAGCACACCATAAACACAACTTTCACATTAAAAGCTCTACATTTAAGCTAAATATATGTCTATTTTTTGGACCAGCTGGTTTAACTGCTAACATTCTACTTTCTCTAATATAGAAACTAAAGATAGGTGCTTGTCTGTGCATCATTTTGAGACAAAAGATGTGTATTGATGCTTATTTTCTGCTCTTCTAAAATCTGCTGTTCTGTTTCCAGTGATTGACTACTGTTCATTTGGGAATGATAGCTGTGAGCATGAGTGTGTGAGTGTCCTCAATGGTTTTCACTGCCGTTGTAAGGACGGATA[C/A]ACCCTCAATGAGGACAAGAAGACCTGTACAAGTTAGTGAGAATAACTGTTTTCTTGTTTGCATCTTGCTTGCTGTATTTACATTTTAACGGACAGTTGCCTAATGCTGATTTATAATGGGGAAAGTACTGCATATTGTTTTAAATGATCATAGTTTCTTGTTTTGCCTTTTGTTTTAGAATTTATTGAAGCAGTTATAAATGAAATACCAGATAGTTTGTGGTTTTGCATGAAGAATACTAGAAAAAATGCCTGTGTTACCCTATATATATACTGTACAACACACAGGTCCATTTGGATTTCACATATATAAAATATATGTCATATTTGTCCAAATATTTCTAAATTTTTAATTAGGGTATGTACATGTATGTTAAAAATAATAATAATAATAATAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGCATATATAAGGCATATATATGCCTTA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa40795
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000002571 Nonsense 461 698 10 13
ENSDART00000065681 Nonsense 707 944 15 18
ENSDART00000065682 Nonsense 584 821 13 16
ENSDART00000065683 Nonsense 502 637 11 14
ENSDART00000077761 Nonsense 420 657 9 12
ENSDART00000077763 Nonsense 502 561 11 14
ENSDART00000103118 Nonsense 379 441 8 11
Genomic Location (Zv9):
Chromosome 6 (position 52783116)
Other Location(s):
Assembly Chromosome Position
GRCz10 6 52832121
GRCz11 6 52830450
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGAAAAAAAATAACATTGAAATGAACTTCTGTTGATTTCTCCAAGCTTGT[C/T]GAACCTCCAACATCGACCTGGTCCTGCTCATCGATGGCTCCAAGAGTGTC
Long Flanking Sequence:
GTGGCTCAGTTGCAGGGACTTTAAAAGTGTGTATTGTCTCAGAATATTCAAGTACTGCAAGACAATGATCTGACTTAACCTCCTTTTGCTTTCAATCTCCAAAACATGTGATAAAGAACCATCTTTCACGTTGTAAAAGCGCTGTAGATTAAGGTGAATTGAATTGAATTAGAATAAAGTGGGACATAATAAAATAAAAAGCAGCAGCAGCAACAAAAATAAATAAATTAAACATAAGTTTTAATATTAAAAACTTCAACTAAATAAAAATAAAAACACAAATACATCGAAACCCATTCTGACCGTAGCCATGTAGCAAGTACATGTAATTAATCACTATTAAAATTAATTAAATAAGTAACAAGAGCACTTTAGATTAAAGTGTGACCTAATTTAATGATGAAAGAATTTTCATGTATGGGTGAATTATTCTATTCAGAAAATGATCAATGAAAAAAAATAACATTGAAATGAACTTCTGTTGATTTCTCCAAGCTTGT[C/T]GAACCTCCAACATCGACCTGGTCCTGCTCATCGATGGCTCCAAGAGTGTCCGGCCGCAGAATTTTGAGCTGGTCAAGCAGTTTGTGAACCAGGTGGTGGATCAGCTGGACGTCTCTGCTAAAGGCACACGTGTGGGACTCGTCCAGTACTCCAGCCGCGTGCGCACAGAGTTCCCGCTCAGCATGTACCACAGCAAAGATGAGATCAAGAAGGCCGTGATGAATGTGGAGTACATGGAAAAGGGCACCATGACAGGCCTGGCCCTCAAACACATGGTGGAGAACAGCTTCTCTGAGGCCGAAGGAGCACGTCCTGCTGAGAAAAACATCCCGCGGGTCGGCCTGGTGTTCACTGATGGACGCTCACAGGATGACATTCAGGAGTGGGCCAAGAAAGCCAAGGAAGCAGGTATGTAAAGGAGTTATTTAAGTTAACCCTTTATTTGAAGTTAAGTTTATTTTAAGTTAACCCTTTATTTTAAGTAAAGTTTATTTTAAGTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa40796
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000002571 Nonsense 670 698 12 13
ENSDART00000065681 Nonsense 916 944 17 18
ENSDART00000065682 Nonsense 793 821 15 16
ENSDART00000065683 None None 637 13 14
ENSDART00000077761 Nonsense 629 657 11 12
ENSDART00000077763 None None 561 13 14
ENSDART00000103118 None None 441 10 11
Genomic Location (Zv9):
Chromosome 6 (position 52792971)
Other Location(s):
Assembly Chromosome Position
GRCz10 6 52841976
GRCz11 6 52840305
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ACATCGAGGTGAAAGATCCCTGTGCCTGTGAGAGTCTGGTGGAGTTTCAA[C/T]AGGTCACGATGTCCACCATTGAGCAGCTCAACCAGAAACATATCCTTTAT
Long Flanking Sequence:
TTTTGCAAGATACTATTATTTAGCCTAAAGTTCAATTTAAAGGCTTAATTAGGTTAACTAAGTTAGGTTTATTAGGCAAGTCTTTGGAGAATAGAAGTTTGTTCTGTGGGGGGATAATAACACTGACCTTCAAATTGTTTTAAGAAAATGAAAACTGCTTTTATTCCAGCCCAAATAAAATAAATAAAACATTCTCCAGAGTAAAAAAATATAGGAAATACTGGAAAATAGCTTTGCTCTGTTAAACATCACTTGGGAAATATGTAACGTAGAGCTACTGTAAAGTAATATTTGGAAAAGTAGAGTTAAAATAATTTTTTACTTTTTACACTATTTCTATAACCTTCCTCAGATGTTTACCAATTGCATAAATGTTGATGCTTTTAATAACGAATATTGTGTTTATTCTTGCTCATTTTCTGCACTGTTGTTCAGCGGAGAGTAAAGGAGACATCGAGGTGAAAGATCCCTGTGCCTGTGAGAGTCTGGTGGAGTTTCAA[C/T]AGGTCACGATGTCCACCATTGAGCAGCTCAACCAGAAACATATCCTTTATATACTCACTACAGATCCTTTAAAACATATAACATTGCATGCAACTAAACCATGCAACTCATTTAAAGGGTTCATTAACCCAGAAAAGTCAATTTTATTATGAATTACTCATCTTCATGACATTTTAATCTCCTGAGACATTTGTTCATCTTCAACACAAGTTAAGATGTTTTAGATTAAATGCAGGAACTCTCTCGTCTTCCATAGACAGCAATGAGCTCAGGGATGTTCAAAGTGTAAAAAGCAACCCAGGCTCATTTCTGGAGACAGTGAAATATGTAACCGGAGGTGTCTGCTTGCAATTTTTGTTTTTGCAAATCCACCAGAGGCCGCTGTTTATGCTTTTTGATGATCTTATCATTTTCTTGCACATCCTCTTCTTGAGTAAATCCACCAGAGGGCACAATAAAACACTTCAGCTGGCCAGGCCAGCTTGCTGTCAACCGACAGA
Associated Phenotype:
Not determined