ZMP
si:busm1-104n07.3
Ensembl ID:
ZFIN ID:
Description:
Novel protein similar to MHC class II beta chain [Source:UniProtKB/TrEMBL;Acc:Q8MGS5]
Human Orthologues:
HLA-DOB, HLA-DPB1, HLA-DPB2, HLA-DQB1, HLA-DQB2, HLA-DRB1, HLA-DRB5
Human Descriptions:
major histocompatibility complex, class II, DO beta [Source:HGNC Symbol;Acc:4937]
major histocompatibility complex, class II, DP beta 1 [Source:HGNC Symbol;Acc:4940]
major histocompatibility complex, class II, DP beta 2 (pseudogene) [Source:HGNC Symbol;Acc:4941]
major histocompatibility complex, class II, DQ beta 1 [Source:HGNC Symbol;Acc:4944]
major histocompatibility complex, class II, DQ beta 2 [Source:HGNC Symbol;Acc:4945]
major histocompatibility complex, class II, DR beta 1 [Source:HGNC Symbol;Acc:4948]
major histocompatibility complex, class II, DR beta 5 [Source:HGNC Symbol;Acc:4953]
major histocompatibility complex, class II, DP beta 1 [Source:HGNC Symbol;Acc:4940]
major histocompatibility complex, class II, DP beta 2 (pseudogene) [Source:HGNC Symbol;Acc:4941]
major histocompatibility complex, class II, DQ beta 1 [Source:HGNC Symbol;Acc:4944]
major histocompatibility complex, class II, DQ beta 2 [Source:HGNC Symbol;Acc:4945]
major histocompatibility complex, class II, DR beta 1 [Source:HGNC Symbol;Acc:4948]
major histocompatibility complex, class II, DR beta 5 [Source:HGNC Symbol;Acc:4953]
Mouse Orthologues:
H2-Ab1, H2-Eb1, H2-Eb2, H2-Ob
Mouse Descriptions:
histocompatibility 2, O region beta locus Gene [Source:MGI Symbol;Acc:MGI:95925]
histocompatibility 2, class II antigen A, beta 1 Gene [Source:MGI Symbol;Acc:MGI:103070]
histocompatibility 2, class II antigen E beta Gene [Source:MGI Symbol;Acc:MGI:95901]
histocompatibility 2, class II antigen E beta2 Gene [Source:MGI Symbol;Acc:MGI:95902]
histocompatibility 2, class II antigen A, beta 1 Gene [Source:MGI Symbol;Acc:MGI:103070]
histocompatibility 2, class II antigen E beta Gene [Source:MGI Symbol;Acc:MGI:95901]
histocompatibility 2, class II antigen E beta2 Gene [Source:MGI Symbol;Acc:MGI:95902]
Alleles
There is 1 allele of this gene:
Allele Name | Consequence | Status | Availability |
---|---|---|---|
sa1580 | Essential Splice Site | Available for shipment | Available now |
Mutation Details
Allele Name:
sa1580
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
A > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000097932 | Essential Splice Site | 116 | 250 | 3 | 5 |
ENSDART00000148323 | Essential Splice Site | 131 | 242 | 3 | 4 |
Genomic Location (Zv9):
Chromosome 8 (position 37480456)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 8 | 36336503 |
GRCz11 | 8 | 36368937 |
KASP Assay ID:
554-1523.1 (used for ordering genotyping assays)
KASP Sequence:
TTTCCTMATTTGTAAAAGCAGCAAATTTAGAATGTTGCTCTTGTTGATTT[A/C]GTGAAACCAAAGGTTAAGCTCACTTTAGTGAAGCCAGCTGGTGGAAGACA
Long Flanking Sequence:
TTTCAACATGCAAAATATCCCTGAATTAAAGAGATCATTGAATAAACAATGGCAATTTCTCAAGTGACATTTGGAAAGCAGAAGTAAACTCTACCTAGGTAAACCACTTTTTTTCCCTACTTGAATAGGTATATCAAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATATATATATATATATATATTTTTTTTTTTCTTTCTAAATTTTTCAACACAAACGTGATAGTTTCTCCTTAAAAGTGTCACATTTCAAATAATATTTGGAAAGAAAAATACCACATTACAGCCATGTTGTTGCTAATGTTATTAAACCCAATGATCAGAAATTATACATTGCAACACTTAATGACCTACGTACATAACTTTTGTAAGAATATAATCTATACGTATATGAGTACATATCATAATGCTGCCATTTCATTTGTTAAAAGCCACAATTTCCTCATTTGTAAAAGCAGCAAATTTAGAATGTTGCTCTTGTTGATTT[A/C]GTGAAACCAAAGGTTAAGCTCACTTTAGTGAAGCCAGCTGGTGGAAGACATCCTGCAGTTTTGATGTGCAGCGCGTATGAATTTTATCCTCCACACATCAGAGTGTACTGGCTGAGAAATGGTGAAGTGATAACCTCTGATGTGACATCAACTATGGAGATGGCTGATGGAGACTGGTATTACCAGATTCACTCTGAGCTGGAGTACAGCCCAAAATCTGGAGAAAGGATCTCATGTGGGATTGAACATGCCAGCTCTAATAAACCCATCATTACAGAGTGGGGTAAGCGGAATATGCTTACTGTCATATTAGCATTGTTTGTGGGACAATTTGACATACTATTGTATCCTACAGATTCATCTCGTCCTGCGTCTGAGAGGAATAAAATCGCCATTGGGGCATCTGGTGTAGTTCTGGGAATCATCATCCCAGCTATATGTTTTATTTACTACAAGAAAACTGCAGGTTAGTTTCAATTCATTTAACTTTTTTTTCTATT
Associated Phenotype:
Normal
Stage | Entity | Quality | Tag |
---|---|---|---|
Larval:Day 5 ZFS:0000037 |
whole organism ZFA:0001094 |
quality PATO:0000001 |
normal PATO:0000461 |