ZMP
LOC100334775
Ensembl ID:
Human Orthologue:
LPHN1
Human Description:
latrophilin 1 [Source:HGNC Symbol;Acc:20973]
Mouse Orthologue:
Lphn1
Mouse Description:
latrophilin 1 Gene [Source:MGI Symbol;Acc:MGI:1929461]
Alleles
There are 7 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa1986 | Essential Splice Site | F2 line generated | Not yet available |
| sa25716 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
| sa25715 | Nonsense | Mutation detected in F1 DNA | Not yet available |
| sa32807 | Nonsense | Mutation detected in F1 DNA | Not yet available |
| sa15599 | Nonsense | Available for shipment | Available now |
| sa38303 | Nonsense | Mutation detected in F1 DNA | Not yet available |
| sa44519 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
Mutation Details
Allele Name:
sa1986
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > G
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000114576 | Essential Splice Site | 18 | 390 | 1 | 6 |
Genomic Location (Zv9):
Chromosome 1 (position 59550841)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 1 | 58002806 |
| GRCz11 | 1 | 58698098 |
KASP Assay ID:
554-2833.1 (used for ordering genotyping assays)
KASP Sequence:
ATGARGCTCCAGACAGCAGCTCTGACTYTCTCTGCTCTCCTCTGCGCAGG[T/G]CACRCTTTATTTATTCACTCTTTCTGCTCATTATGAWGTTGTGAATATCC
Long Flanking Sequence:
AGTATAAGAAAAATAAAAACTTCTAAAAAAATGATTAAAAACAGATTACAGTGTGTGTGTGTACTGTATGTGACTGTGTGTAAGTATGTATAGGAGAAGATGTGTGTGTGTGTGTGTGTGTCTTTTTCTCTCTCTGTATGTGTATGAGTGCGTGTGACTGTTTTTGTCTGTTTTTCTCTCCCTGTATGTATGTATGTGTGTGTTTGCAAGTTTGCACATGACTGTGTGTGTATGGGAGACTGTGTGTTTGTGTTTCTATGTCTCTCTCTGTATGTATGTGTGTGGTGGGGTATCAGTCTGTATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGCATGCATGCATGCGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTAAAGCAGATAGCAGATACAGAGAGTTCAGTTCAGTCATGATGAAGCTCCAGACAGCAGCTCTGACTTTCTCTGCTCTCCTCTGCGCAGG[T/G]CACACTTTATTTATTCACTCTTTCTGCTCATTATGATGTTGTGAATATCCAGACTATATAATATCACAATTATTATTATTATAATTACACGCGTTCATGCTTCTTCCTTCTGTATTATTACAGTATCCTGTGTTCAGTCAGTGTTTATTGTTCTTAAGTGATTGTTGTTGTTGATTTTGTCTGTTTTGTGTTCATTATTTGTGTTATTATCTCTGAAATGTGACTCATAATCCAGCGTCACACACTTTATTTACTCAGCAGTGTATATCTCTTCTTTTATTTGTTCTTTATTTTGCTTTAGCTGCGTCTTTCAGTGTTTTATTATTAAAGGGTCGATTCACCCAAAAATAAACATTCTGTGAATTCCTTCAAATACAGAATATATTTAGAATATTACTCTATTTAAATGTGGTTTGTATTGATGTATTTGTAGCCTAATTTAAATGTCTTTAAATGTATGTTTAATAATTCTATACAATTATAACTGCTGCTTTACTAAT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa25716
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > T
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000114576 | Essential Splice Site | 67 | 390 | 3 | 6 |
Genomic Location (Zv9):
Chromosome 1 (position 59546680)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 1 | 57998645 |
| GRCz11 | 1 | 58693937 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CCCCATCCCCTGCTCCTGCTAATACTCCTCTATTATGGCTCTGTCTCTGC[A/T]GTTTTTGTCTGTCCTGGAACACTGGTGCGCGTGCTGGAGCCCAGTTCGGT
Long Flanking Sequence:
TCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCCGTCCATCCATCCATCCATCCATCCATCCATCCATCCATCTCTCTCTCTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCATCCCTCTCTCTCTCTCTCTATCTATCTATCTATCTATCCTCTTATGATGTTGTATTTTCACCCTTTGAGAATGAAATCTCTCTTTCTCACACACACAGGCACTCATGATACAGCAATAGGTAGTGTAAGATGTGTGTCGTATGTATGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGAGTGTAGAATAGATCTGTCCATTGGATCTATTCCTTCATCAGTCTAATACACCCCATCCCCTGCTCCTGCTAATACTCCTCTATTATGGCTCTGTCTCTGC[A/T]GTTTTTGTCTGTCCTGGAACACTGGTGCGCGTGCTGGAGCCCAGTTCGGTGCGGGAAGCGGAGGATCATTCGGGGGCGTGGTGTAAAGACCCCCTGCAGGCGGGCGATAGACTGTATGTGATGCCCTGGACGCCCTATCGCACCGACATGCTGTATGAATACGCCTCCTGGGACGACTACATTCAAAACAGAGTCACCACCACGTATAAGTGAGTTTCACAGTGTCTATTTATTCTTTGATCAAATGTAATCAAGGCACATTTTACTTTCACTTTCAATTTGGAATAGCAAGTGTGTGCTTGATTGAAGCAAAAATAATAATTACATAACATAACAGCCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCATCCCTCCATCTATCCATCTATCTATCTATCTATCTATCCTCTTATGATGTTGTATTTTCACCCTTTGAGAATGAAATCTCTCTTTCTCACACACA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa25715
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000114576 | Nonsense | 103 | 390 | 3 | 6 |
Genomic Location (Zv9):
Chromosome 1 (position 59546571)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 1 | 57998536 |
| GRCz11 | 1 | 58693828 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CGGAGGATCATTCGGGGGCGTGGTGTAAAGACCCCCTGCAGGCGGGCGAT[A/T]GACTGTATGTGATGCCCTGGACGCCCTATCGCACCGACATGCTGTATGAA
Long Flanking Sequence:
ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCATCCCTCTCTCTCTCTCTCTATCTATCTATCTATCTATCCTCTTATGATGTTGTATTTTCACCCTTTGAGAATGAAATCTCTCTTTCTCACACACACAGGCACTCATGATACAGCAATAGGTAGTGTAAGATGTGTGTCGTATGTATGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGAGTGTAGAATAGATCTGTCCATTGGATCTATTCCTTCATCAGTCTAATACACCCCATCCCCTGCTCCTGCTAATACTCCTCTATTATGGCTCTGTCTCTGCAGTTTTTGTCTGTCCTGGAACACTGGTGCGCGTGCTGGAGCCCAGTTCGGTGCGGGAAGCGGAGGATCATTCGGGGGCGTGGTGTAAAGACCCCCTGCAGGCGGGCGAT[A/T]GACTGTATGTGATGCCCTGGACGCCCTATCGCACCGACATGCTGTATGAATACGCCTCCTGGGACGACTACATTCAAAACAGAGTCACCACCACGTATAAGTGAGTTTCACAGTGTCTATTTATTCTTTGATCAAATGTAATCAAGGCACATTTTACTTTCACTTTCAATTTGGAATAGCAAGTGTGTGCTTGATTGAAGCAAAAATAATAATTACATAACATAACAGCCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCATCCCTCCATCTATCCATCTATCTATCTATCTATCTATCCTCTTATGATGTTGTATTTTCACCCTTTGAGAATGAAATCTCTCTTTCTCACACACACAGGCACTCATGATACAGCAATAGGTAGTGTAAGATGTGTGTCGTATGTATGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNNNNNNNNNNNNNNNNN
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa32807
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000114576 | Nonsense | 126 | 390 | 3 | 6 |
Genomic Location (Zv9):
Chromosome 1 (position 59546500)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 1 | 57998465 |
| GRCz11 | 1 | 58693757 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ACGCCCTATCGCACCGACATGCTGTATGAATACGCCTCCTGGGACGACTA[C/A]ATTCAAAACAGAGTCACCACCACGTATAAGTGAGTTTCACAGTGTCTATT
Long Flanking Sequence:
TATCTATCTATCTATCCATCCCTCTCTCTCTCTCTCTATCTATCTATCTATCTATCCTCTTATGATGTTGTATTTTCACCCTTTGAGAATGAAATCTCTCTTTCTCACACACACAGGCACTCATGATACAGCAATAGGTAGTGTAAGATGTGTGTCGTATGTATGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGAGTGTAGAATAGATCTGTCCATTGGATCTATTCCTTCATCAGTCTAATACACCCCATCCCCTGCTCCTGCTAATACTCCTCTATTATGGCTCTGTCTCTGCAGTTTTTGTCTGTCCTGGAACACTGGTGCGCGTGCTGGAGCCCAGTTCGGTGCGGGAAGCGGAGGATCATTCGGGGGCGTGGTGTAAAGACCCCCTGCAGGCGGGCGATAGACTGTATGTGATGCCCTGGACGCCCTATCGCACCGACATGCTGTATGAATACGCCTCCTGGGACGACTA[C/A]ATTCAAAACAGAGTCACCACCACGTATAAGTGAGTTTCACAGTGTCTATTTATTCTTTGATCAAATGTAATCAAGGCACATTTTACTTTCACTTTCAATTTGGAATAGCAAGTGTGTGCTTGATTGAAGCAAAAATAATAATTACATAACATAACAGCCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCATCCCTCCATCTATCCATCTATCTATCTATCTATCTATCCTCTTATGATGTTGTATTTTCACCCTTTGAGAATGAAATCTCTCTTTCTCACACACACAGGCACTCATGATACAGCAATAGGTAGTGTAAGATGTGTGTCGTATGTATGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa15599
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000114576 | Nonsense | 135 | 390 | 3 | 6 |
Genomic Location (Zv9):
Chromosome 1 (position 59546473)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 1 | 57998438 |
| GRCz11 | 1 | 58693730 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GAATACGCCTCCTGGGACGACTACATTCAAAAYAGAGTCACCACCAYGTA[T/A]AAGTGAGYTTCACAGTGTCTRTTTATYCTTTGATYAARTGTAATCAAGGC
Long Flanking Sequence:
CTCTCTCTCTATCTATCTATCTATCTATCCTCTTATGATGTTGTATTTTCACCCTTTGAGAATGAAATCTCTCTTTCTCACACACACAGGCACTCATGATACAGCAATAGGTAGTGTAAGATGTGTGTCGTATGTATGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGAGTGTAGAATAGATCTGTCCATTGGATCTATTCCTTCATCAGTCTAATACACCCCATCCCCTGCTCCTGCTAATACTCCTCTATTATGGCTCTGTCTCTGCAGTTTTTGTCTGTCCTGGAACACTGGTGCGCGTGCTGGAGCCCAGTTCGGTGCGGGAAGCGGAGGATCATTCGGGGGCGTGGTGTAAAGACCCCCTGCAGGCGGGCGATAGACTGTATGTGATGCCCTGGACGCCCTATCGCACCGACATGCTGTATGAATACGCCTCCTGGGACGACTACATTCAAAACAGAGTCACCACCACGTA[T/A]AAGTGAGTTTCACAGTGTCTATTTATTCTTTGATCAAATGTAATCAAGGCACATTTTACTTTCACTTTCAATTTGGAATAGCAAGTGTGTGCTTGATTGAAGCAAAAATAATAATTACATAACATAACAGCCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCATCCCTCCATCTATCCATCTATCTATCTATCTATCTATCCTCTTATGATGTTGTATTTTCACCCTTTGAGAATGAAATCTCTCTTTCTCACACACACAGGCACTCATGATACAGCAATAGGTAGTGTAAGATGTGTGTCGTATGTATGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATCCATCCATCCA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa38303
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > G
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000114576 | Nonsense | 166 | 390 | 4 | 6 |
Genomic Location (Zv9):
Chromosome 1 (position 59545141)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 1 | 57997106 |
| GRCz11 | 1 | 58692398 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GACGGCGCCGTGTTCTACAATAAGGAGCGAACGCGCAACATAGTGAAATA[T/G]GACCTGCGAACTCGCATCAAGAGCGGCGAAGCTGTTATTGTGAATGCAAA
Long Flanking Sequence:
CCACACATCCATCTATTTATCTACACGTCTATCTATTCATCCATCCATCCGTACGTCCATCCATTTATCCTCACATCTATCCATCCGTTTATCCATCCATCCATCCATCCATATATCCATCTAGCCATATATCCATCCGTCCGTCTGTCCATCCATCTACACATCTATCTGTCTATTTATCTAATGATCCATCCATCTGTCCATCCATCCATTTATCCTCACATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTTTAATCTTGATTTATCTGAAAATGTGATGGCTGCAGTTTCTATAACAGCCACAAGGGGAGTCTAAACCCAAATGATATAGGCACCGTTGTGAACGCACGTGTCTTCAAATGCTGTAATAATGAGTTTGTGTAATCTGCAGGCTGCCGAGTCGAGTGGACGGCACTGGGTTTGTGGTGTATGACGGCGCCGTGTTCTACAATAAGGAGCGAACGCGCAACATAGTGAAATA[T/G]GACCTGCGAACTCGCATCAAGAGCGGCGAAGCTGTTATTGTGAATGCAAACTACCATGACGCCTCGCCGTACCACAGGGGCGGGAAATCTGACATCGACCTGGCGGTGGACGAACATGGGCTGTGGGTGATTTACACCACTGAAGCCAATAATGGACGCCTGGTGGTCAGCCAGGTCAGAAACTCAAATAGAAATACAGCCAAATAGAAAACAATTAAAGAGTTAATGAGAAACTTGCTTATAGAATAGCTAGATCATAACAATAACAATAACAATATTCTGCTGTGGTGACCCCTGATAAATAAGCTGAAGAATAATATAAGCTGAAAAATAAGCTGACTGTCTTGTGTGTGTCAGGTGAACCCGTACACGCTGCGTTTCGAGGGCACGTGGCAGACCAGTTTCGAGAAGCGCATGGCGTCGGACGCGTTCGTGGCGTGTGGGATCCTGTACGCCGTGCGCTCCGTCTACCAGGACGACGACAGCGAGGCGGGAGGAGA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa44519
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > G
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000114576 | Essential Splice Site | 225 | 390 | 5 | 6 |
Genomic Location (Zv9):
Chromosome 1 (position 59544785)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 1 | 57996750 |
| GRCz11 | 1 | 58692042 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GCTGAAGAATAATATAAGCTGAAAAATAAGCTGACTGTCTTGTGTGTGTC[A/G]GGTGAACCCGTACACGCTGCGTTTCGAGGGCACGTGGCAGACCAGTTTCG
Long Flanking Sequence:
TTGTGAACGCACGTGTCTTCAAATGCTGTAATAATGAGTTTGTGTAATCTGCAGGCTGCCGAGTCGAGTGGACGGCACTGGGTTTGTGGTGTATGACGGCGCCGTGTTCTACAATAAGGAGCGAACGCGCAACATAGTGAAATATGACCTGCGAACTCGCATCAAGAGCGGCGAAGCTGTTATTGTGAATGCAAACTACCATGACGCCTCGCCGTACCACAGGGGCGGGAAATCTGACATCGACCTGGCGGTGGACGAACATGGGCTGTGGGTGATTTACACCACTGAAGCCAATAATGGACGCCTGGTGGTCAGCCAGGTCAGAAACTCAAATAGAAATACAGCCAAATAGAAAACAATTAAAGAGTTAATGAGAAACTTGCTTATAGAATAGCTAGATCATAACAATAACAATAACAATATTCTGCTGTGGTGACCCCTGATAAATAAGCTGAAGAATAATATAAGCTGAAAAATAAGCTGACTGTCTTGTGTGTGTC[A/G]GGTGAACCCGTACACGCTGCGTTTCGAGGGCACGTGGCAGACCAGTTTCGAGAAGCGCATGGCGTCGGACGCGTTCGTGGCGTGTGGGATCCTGTACGCCGTGCGCTCCGTCTACCAGGACGACGACAGCGAGGCGGGAGGAGATCTGATCCTGTACGCCTACGACACACGGAGGAACCGCGAGGAGCCGGTCAGAATCCCCTTCCCGAACCCCTACCAGCACATCTCCTCCATCAGCTACAACCCCCGAGACAACCAGCTGTACGTCTGGAACAACTACATCGTGCTGCGCTACCCGCTGGAGTTCAGCCCGCCGCAGCCCACCACCGGTCAGTGCTTTTAGGGAGCCGTTTAATGTTCAGAAGAAAACTACTGTACAGGATGATGTTTGATCCTTAACAGGGCACCGATTATGCAGAAATTACTTTAATATGGGGTTTAACCCCAGTAGTGTGTGTGTGTGTGTGTGTGTGTGTGAGCAGTGTGTGTGTATCTCCAGC
Associated Phenotype:
Not determined