ZMP
si:ch211-157h5.2
Ensembl ID:
ZFIN ID:
Description:
hypothetical protein LOC561940 [Source:RefSeq peptide;Acc:NP_001139049]
Human Orthologue:
LIMCH1
Human Description:
LIM and calponin homology domains 1 [Source:HGNC Symbol;Acc:29191]
Mouse Orthologue:
Limch1
Mouse Description:
LIM and calponin homology domains 1 Gene [Source:MGI Symbol;Acc:MGI:1924819]
Alleles
There are 5 alleles of this gene:
Allele Name | Consequence | Status | Availability |
---|---|---|---|
sa44508 | Nonsense | Mutation detected in F1 DNA | Not yet available |
sa16015 | Essential Splice Site | Available for shipment | Available now |
sa31201 | Essential Splice Site | Available for shipment | Available now |
sa15501 | Nonsense | Available for shipment | Available now |
Mutation Details
Allele Name:
sa44508
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000113023 | Nonsense | 348 | 1660 | 9 | 25 |
ENSDART00000126770 | None | None | 319 | None | 9 |
ENSDART00000132379 | None | None | 1019 | None | 22 |
The following transcripts of ENSDARG00000074275 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 1 (position 17749620)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 1 | 18314788 |
GRCz11 | 1 | 19007725 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TCACCTGGATGGTTGAGAAAGGGGCGGAGCTTGATGAGGCGGAGCTTAAG[A/T]AAATGAGGAAGCTGGAAAAAGCGGGAATTAAAGTGTTACCCGCCGCTGTT
Long Flanking Sequence:
CCTACAAAGAGCCTCGTGCCGCTTTACCCTTCAACCAGTATCTGCCGAACAAGAGCAACCAGACTAACTACCTTCCTGCCCCACTGAGGAAGAGGAGGAGCGACAGGGAGGAAGACCGGAGGAGTGTGAGCAACTCGACATCTCCAGTGGGAGGAGAACGACCCCTCAGGTAAACACTGCTGAGGTGAAAGACAGTGTTTGTGTTTTTTTTTTCAGGGAACTGGCTGGAAGCCACTCATCTGTGGCTGACACTCGCCATACATCTCAGCAATAATCAGTACACAAAAGCATGATCAGTTTTATGTGTCCCAGTTTGTTTGATTCATCTCATATTGTCTACAAGTGTGTCCATGAGAGCTCTAAAATTTCCCATTGATCCCCACAGACAAGAGTGTGTAGAAGTGTTAAAAGAAGGGGCTGTCGTGTCTCAAAAAAAAGTCCAGAAACATTTCACCTGGATGGTTGAGAAAGGGGCGGAGCTTGATGAGGCGGAGCTTAAG[A/T]AAATGAGGAAGCTGGAAAAAGCGGGAATTAAAGTGTTACCCGCCGCTGTTCGATACAACAGGTCTGCGGTTGCAATGATAATATATATATTTAGCATGCGTCTGACTAAAACAGCTTGTGTTAAAGATGCTGGGAACCACCAAATGCTTGTGTTGAGTTGAGTTGAGTTCTAATCCCAGGCTGTGTGGATTTTATATTTGGTTTTGTTCTGCATTATAGCATGGAGTGACACAATTGTGAATTAGCTTTGACTGTAGTACTGCCTGGCTAATGTTTTTAGTTGGATGCCATTCAAAGTATTACTGACTTTTTTTAGTGAGCCTGTGAATGATCTGAATGTTTTTGGATTTTTTGAGTAGTCTGAATCGGTTTGTGCTGGTTGGAAGGAGTAATATGTGTGTGTTTTACTGGGTTGAGCAAATTATGCTAGTCATGCTAACTTGACTTGTCCTGAAGGCTAAATGTCTGCGTCAGCTCTTGGGTGCGCTAACATCTCTCTG
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa16015
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000113023 | Essential Splice Site | 368 | 1660 | 9 | 25 |
ENSDART00000126770 | None | None | 319 | None | 9 |
ENSDART00000132379 | None | None | 1019 | None | 22 |
The following transcripts of ENSDARG00000074275 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 1 (position 17749683)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 1 | 18314851 |
GRCz11 | 1 | 19007788 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TGGAAAAAGCGGGAATTAAAGTGTTMCCCGCCGCTGTTCGATACAACAGG[T/A]CTGCGGTTGCAATGATAATATATATATTTAGCATGCGTCTGACTAAAACA
Long Flanking Sequence:
CTAACTACCTTCCTGCCCCACTGAGGAAGAGGAGGAGCGACAGGGAGGAAGACCGGAGGAGTGTGAGCAACTCGACATCTCCAGTGGGAGGAGAACGACCCCTCAGGTAAACACTGCTGAGGTGAAAGACAGTGTTTGTGTTTTTTTTTTCAGGGAACTGGCTGGAAGCCACTCATCTGTGGCTGACACTCGCCATACATCTCAGCAATAATCAGTACACAAAAGCATGATCAGTTTTATGTGTCCCAGTTTGTTTGATTCATCTCATATTGTCTACAAGTGTGTCCATGAGAGCTCTAAAATTTCCCATTGATCCCCACAGACAAGAGTGTGTAGAAGTGTTAAAAGAAGGGGCTGTCGTGTCTCAAAAAAAAGTCCAGAAACATTTCACCTGGATGGTTGAGAAAGGGGCGGAGCTTGATGAGGCGGAGCTTAAGAAAATGAGGAAGCTGGAAAAAGCGGGAATTAAAGTGTTACCCGCCGCTGTTCGATACAACAGG[T/A]CTGCGGTTGCAATGATAATATATATATTTAGCATGCGTCTGACTAAAACAGCTTGTGTTAAAGATGCTGGGAACCACCAAATGCTTGTGTTGAGTTGAGTTGAGTTCTAATCCCAGGCTGTGTGGATTTTATATTTGGTTTTGTTCTGCATTATAGCATGGAGTGACACAATTGTGAATTAGCTTTGACTGTAGTACTGCCTGGCTAATGTTTTTAGTTGGATGCCATTCAAAGTATTACTGACTTTTTTTAGTGAGCCTGTGAATGATCTGAATGTTTTTGGATTTTTTGAGTAGTCTGAATCGGTTTGTGCTGGTTGGAAGGAGTAATATGTGTGTGTTTTACTGGGTTGAGCAAATTATGCTAGTCATGCTAACTTGACTTGTCCTGAAGGCTAAATGTCTGCGTCAGCTCTTGGGTGCGCTAACATCTCTCTGTATAGAGTGCAACAGCAACAGTTGGGTTTAACGGAGTAGAGATTCCTTTCATTTTTCTGTGTG
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa31201
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000113023 | None | None | 1660 | None | 25 |
ENSDART00000126770 | Essential Splice Site | 175 | 319 | 4 | 9 |
ENSDART00000132379 | Essential Splice Site | 875 | 1019 | 17 | 22 |
The following transcripts of ENSDARG00000074275 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 1 (position 17802223)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 1 | 18367391 |
GRCz11 | 1 | 19060328 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AGCTCAGGAGAGCCAGATCACAGCTACACCACAACTGCAGTTCATACAGG[G/A]TAAGACATGCACATATAAATCTCAAAGGGTTTCAATAGTAAACGGATACA
Long Flanking Sequence:
CCTGATACCGAGATCCTCTTCCGAGATGTGCTTCATTATTTATATATTTTTTTGCTCTGAGGGTGGTTTATTTGCAAATATATATTTACCACTGTGATGTCACATGCCAGCTAGTTGATAAACGAATCATTTTTACAGCTTTATTAAATAAATGCATTGTTTTTATGAATGAGGAGGATAATTAAAGAGTTGAAACTTGCAGGATGTTTTAATGAAACAAAGACTCTTATTTGTGAAAATCTCAATGCAGATTTGATTTCTCATGTCATGGCCCCTTTAATTCAGTGGCATAATGAGCTCACTTCGCTGTACTTTGGCACACGTTCATTTGAAAAGGTGTATCAGAAACATACAGATTTGAGTGTTGACATCATATCTTGATTGTTGTTATAATCTCTGTAGTCCTGATCCAGTAATTGCAGCAGCTCAGCAGAACGGACAAAGAGCTGAAGCTCAGGAGAGCCAGATCACAGCTACACCACAACTGCAGTTCATACAGG[G/A]TAAGACATGCACATATAAATCTCAAAGGGTTTCAATAGTAAACGGATACAGTACATGTTTAAAAAGTTATATTATTAGTTAATGTGTTTAGGTGTTTAAAAATTCTATGTTTGTTAGTTTTATACATTTTTAAAGTCTTGGATACTATTGTCATAGACTGTAAATAGTGTTGTTTTATGCAAATAGTGCCAAAAGAAAATATTTCTTTTAAATAATGTTTTCAAACATTATGTTCAGTGTGAATTTTAATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTGTATTTATTTGTTTGTTTGTTTGTTTGTTTATTTGTTTATTTATTATTATTATTAGTATTGTTATTGTTATTATTATAGGTGTAATTAAAATATTAATGTTATTCTCTCCAACATACAGGATGACACCTTTTGGAATTATTATTTTATTTAAAATATTTTGA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa15501
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000113023 | None | None | 1660 | None | 25 |
ENSDART00000126770 | Nonsense | 181 | 319 | 5 | 9 |
ENSDART00000132379 | Nonsense | 881 | 1019 | 18 | 22 |
The following transcripts of ENSDARG00000074275 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 1 (position 17803342)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 1 | 18368510 |
GRCz11 | 1 | 19061447 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
AGATGATTTCTCTGTYTCCCTGTGTGTTTTACAGATGGCTCGTGGAGCTG[C/A]AAGTCTAAAGGCAGGCAGGAGGATCTGAAGAAAACCGCYTCGCTGGATCG
Long Flanking Sequence:
ATGCAATTTATTGAATCAAAAATTGTGAAATACTATTTCAGTTTAAACAATTTTGCTCTGTTAATATTTTTTACAATGAAATATATTTTCCCTTCTTTAGGAAATGTATTTTGTACACCAAAAAATGTGGTTATGATGACCAAACAACAAGCTAATTCAGCTAAAAATAGGCGAATATGTCCCCTTTTTGAGAAAAAGAACAACCCGTTTCACCAGGCTGGCTACAGGCCTAATAATATATATAAAACACAACAGTAAAACTTTGAATTAAATAAATAAGTAACATTTTAAAAGATATTCGCATTGTAAACAGTCGTTTGAATTTGAAATCAAAGTAGTACTGTTTATATTGTATTTTTCTGTTTATATCTTCCTAGTTAAGCAGAGCAGACGTCTTTTAAAAACATTAAACCTTAATGTCAATTATTGCCAAAGTTCTCAGCAAATTAAAGATGATTTCTCTGTCTCCCTGTGTGTTTTACAGATGGCTCGTGGAGCTG[C/A]AAGTCTAAAGGCAGGCAGGAGGATCTGAAGAAAACCGCCTCGCTGGATCGTAAACAGAGTCCAGCCCCAAGCCAGACCACAGGGATGAGGAGGTGTGTGCGTGCGCATATGTGTGTGCATCTGAATGCATGCTGGCTTGCACACACACATGTTCGCCAAAAGTGCTGCTTGGCTTTCCAATGAGTAGATCAGATCAGTTTGAGTTTTTCATTTTCTGGCACATGGAGCATTTCTGCATATGACTTGCTTTTACAGTTCTCTATGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCATGTGTATGTGGCTGCTGGCAGGACTGGGTCATGTGAGAATGTTTTAGGAACACACCCATCAAAATCACCCACACCATCACAAGACACGCCACCTCCATCACCCAGCAGGTACAGTACGAGCCTTTTCTCCAGCACACACTTTGTCACGTGGAGATACTGAGCCTTCCACTAATACTGGCACTCTGTGTGA
Associated Phenotype:
Not determined